Wall clock time and date at job start Wed Apr 1 2020 03:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47174 * 2 1 4 4 C 1.52998 * 109.47168 * 240.00199 * 2 1 3 5 5 N 1.46502 * 109.47360 * 64.99856 * 4 2 1 6 6 C 1.34782 * 120.00166 * 180.02562 * 5 4 2 7 7 O 1.21350 * 119.99528 * 359.97438 * 6 5 4 8 8 C 1.49446 * 120.00084 * 179.97438 * 6 5 4 9 9 O 1.21356 * 119.99803 * 353.37756 * 8 6 5 10 10 N 1.34768 * 120.00057 * 173.37736 * 8 6 5 11 11 C 1.46923 * 120.63140 * 353.06161 * 10 8 6 12 12 C 1.53197 * 108.77603 * 126.41596 * 11 10 8 13 13 C 1.53036 * 109.34037 * 54.62030 * 12 11 10 14 14 C 1.53043 * 109.53781 * 298.68543 * 13 12 11 15 15 H 1.09000 * 109.49772 * 301.34791 * 14 13 12 16 16 C 1.50699 * 109.49861 * 181.28187 * 14 13 12 17 17 H 1.08009 * 119.99826 * 0.06421 * 16 14 13 18 18 C 1.37874 * 120.00391 * 180.34183 * 16 14 13 19 19 N 1.31511 * 119.99935 * 359.72505 * 18 16 14 20 20 Si 1.86803 * 120.00371 * 179.72468 * 18 16 14 21 21 H 1.48501 * 109.46889 * 59.99781 * 20 18 16 22 22 H 1.48493 * 109.47092 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46907 * 300.00065 * 20 18 16 24 24 C 1.46927 * 120.63303 * 173.08900 * 10 8 6 25 25 C 1.50699 * 109.47374 * 120.00081 * 2 1 3 26 26 C 1.38225 * 120.00098 * 59.72474 * 25 2 1 27 27 C 1.38238 * 120.00037 * 179.76838 * 26 25 2 28 28 C 1.38234 * 119.99736 * 0.48260 * 27 26 25 29 29 C 1.38235 * 120.00403 * 359.79781 * 28 27 26 30 30 C 1.38236 * 119.99688 * 359.94891 * 29 28 27 31 31 H 1.09005 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47539 * 299.99970 * 1 2 3 33 33 H 1.08999 * 109.47467 * 60.00076 * 1 2 3 34 34 H 1.09007 * 109.47352 * 304.99631 * 4 2 1 35 35 H 1.09010 * 109.47442 * 184.99717 * 4 2 1 36 36 H 0.96996 * 120.00059 * 359.97438 * 5 4 2 37 37 H 1.08998 * 109.59171 * 246.19792 * 11 10 8 38 38 H 1.09003 * 109.58922 * 6.48999 * 11 10 8 39 39 H 1.08995 * 109.50150 * 174.58993 * 12 11 10 40 40 H 1.09009 * 109.49617 * 294.68452 * 12 11 10 41 41 H 1.08997 * 109.49188 * 178.64856 * 13 12 11 42 42 H 1.09001 * 109.43006 * 58.68768 * 13 12 11 43 43 H 0.97000 * 120.00590 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.59192 * 113.79627 * 24 10 8 45 45 H 1.08998 * 109.70190 * 353.44355 * 24 10 8 46 46 H 1.08000 * 120.00163 * 0.02562 * 26 25 2 47 47 H 1.08000 * 120.00376 * 180.25754 * 27 26 25 48 48 H 1.08000 * 119.99948 * 179.76572 * 28 27 26 49 49 H 1.07991 * 120.00368 * 179.97438 * 29 28 27 50 50 H 1.07997 * 120.00151 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 1.9955 -0.4136 -3.6660 7 8 2.6259 -1.4443 -3.7793 8 6 1.5997 0.3580 -4.8832 9 8 0.8688 1.3212 -4.7799 10 7 2.0543 -0.0160 -6.0955 11 6 3.0569 -1.0825 -6.2227 12 6 2.5299 -2.1410 -7.1967 13 6 2.1547 -1.4701 -8.5200 14 6 1.0470 -0.4424 -8.2768 15 1 0.1800 -0.9384 -7.8405 16 6 0.6563 0.1951 -9.5852 17 1 1.1479 -0.1034 -10.4994 18 6 -0.3246 1.1636 -9.6144 19 7 -0.9231 1.5271 -8.5013 20 14 -0.8035 1.9594 -11.2352 21 1 -1.2995 0.9179 -12.1705 22 1 -1.8738 2.9609 -10.9977 23 1 0.3817 2.6313 -11.8260 24 6 1.5573 0.6353 -7.3151 25 6 2.0323 -0.7104 1.2304 26 6 1.6938 -2.0321 1.4521 27 6 2.1586 -2.6852 2.5783 28 6 2.9537 -2.0135 3.4879 29 6 3.2876 -0.6900 3.2693 30 6 2.8271 -0.0385 2.1404 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.6054 -1.7198 -1.2952 35 1 3.1264 -0.7994 -1.2057 36 1 1.1482 0.8591 -2.3518 37 1 3.9880 -0.6649 -6.6057 38 1 3.2337 -1.5361 -5.2474 39 1 3.3027 -2.8889 -7.3743 40 1 1.6492 -2.6214 -6.7703 41 1 1.8019 -2.2246 -9.2231 42 1 3.0301 -0.9695 -8.9338 43 1 -1.6135 2.2081 -8.5218 44 1 2.3661 1.1931 -7.7872 45 1 0.7434 1.3151 -7.0630 46 1 1.0695 -2.5558 0.7432 47 1 1.8975 -3.7191 2.7494 48 1 3.3137 -2.5226 4.3697 49 1 3.9084 -0.1651 3.9801 50 1 3.0882 0.9954 1.9693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261680309.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:29 Heat of formation + Delta-G solvation = -60.194286 kcal Electronic energy + Delta-G solvation = -29850.500637 eV Core-core repulsion = 25841.781026 eV Total energy + Delta-G solvation = -4008.719611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.98115 -40.51333 -39.71920 -38.53712 -37.27579 -35.28482 -34.29189 -33.43014 -31.76091 -31.57001 -30.32966 -28.44590 -27.20966 -26.62319 -24.62748 -23.72659 -23.51306 -23.08130 -21.74398 -21.15147 -20.34141 -18.92037 -18.27200 -17.95569 -17.61140 -17.09078 -16.86466 -16.50627 -16.31773 -15.93808 -15.85705 -15.51748 -15.44488 -14.84964 -14.82383 -14.53442 -14.50150 -14.44144 -14.15072 -13.93963 -13.82204 -13.53812 -13.40273 -13.02850 -12.96010 -12.85263 -12.51541 -12.39366 -12.29186 -12.20743 -12.17414 -11.77923 -11.71061 -11.65888 -11.56686 -11.16770 -10.98523 -10.54687 -10.36768 -10.00800 -9.77508 -9.60419 -9.54761 -8.12259 -6.28763 0.34758 0.45231 0.54466 1.35301 1.42383 1.44560 1.51826 2.15082 2.41275 2.57407 2.90835 3.15783 3.30666 3.66896 3.75774 3.96992 4.15598 4.16886 4.18895 4.20602 4.33056 4.34674 4.38099 4.57547 4.61295 4.63412 4.67375 4.71579 4.76543 4.81627 4.83501 4.90111 5.05381 5.08047 5.14276 5.17301 5.21339 5.23705 5.27331 5.30168 5.39723 5.52558 5.56571 5.62608 5.67785 5.73648 5.83762 5.93461 5.98974 6.15631 6.29517 6.44763 6.73778 6.83105 6.98229 7.40915 8.91682 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022697 B = 0.002090 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.337320 B =13394.485056 C =14142.510141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 H 0.098 0.902 4 C 0.127 3.873 5 N -0.684 5.684 6 C 0.521 3.479 7 O -0.520 6.520 8 C 0.486 3.514 9 O -0.558 6.558 10 N -0.575 5.575 11 C 0.049 3.951 12 C -0.120 4.120 13 C -0.107 4.107 14 C 0.039 3.961 15 H -0.011 1.011 16 C -0.536 4.536 17 H 0.063 0.937 18 C 0.011 3.989 19 N -0.915 5.915 20 Si 0.960 3.040 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.121 3.879 25 C -0.084 4.084 26 C -0.125 4.125 27 C -0.128 4.128 28 C -0.130 4.130 29 C -0.127 4.127 30 C -0.123 4.123 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.418 0.582 37 H 0.070 0.930 38 H 0.156 0.844 39 H 0.098 0.902 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.262 0.738 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.125 0.875 47 H 0.135 0.865 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.930 -5.992 24.154 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 H 0.116 0.884 4 C 0.004 3.996 5 N -0.336 5.336 6 C 0.302 3.698 7 O -0.399 6.399 8 C 0.268 3.732 9 O -0.438 6.438 10 N -0.306 5.306 11 C -0.071 4.071 12 C -0.158 4.158 13 C -0.144 4.144 14 C 0.019 3.981 15 H 0.007 0.993 16 C -0.574 4.574 17 H 0.081 0.919 18 C -0.189 4.189 19 N -0.554 5.554 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.213 1.213 23 H -0.192 1.192 24 C 0.000 4.000 25 C -0.084 4.084 26 C -0.143 4.143 27 C -0.146 4.146 28 C -0.148 4.148 29 C -0.145 4.145 30 C -0.141 4.141 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.256 0.744 37 H 0.089 0.911 38 H 0.172 0.828 39 H 0.116 0.884 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.143 0.857 47 H 0.153 0.847 48 H 0.156 0.844 49 H 0.157 0.843 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.863 -6.097 24.203 26.486 hybrid contribution -0.953 1.008 -1.114 1.779 sum 7.910 -5.089 23.089 24.931 Atomic orbital electron populations 1.21904 0.93312 1.02777 1.02526 1.20295 0.96847 0.99930 0.90210 0.88368 1.21681 1.00724 0.95335 0.81812 1.45805 1.55340 1.28064 1.04420 1.19940 0.79930 0.85083 0.84844 1.90280 1.40249 1.24740 1.84621 1.20469 0.82127 0.85074 0.85509 1.90728 1.38254 1.28448 1.86333 1.48462 1.40139 1.36512 1.05475 1.23319 0.89546 0.87923 1.06329 1.21820 1.01154 0.97765 0.95088 1.21560 0.98296 0.97820 0.96759 1.18911 0.92979 0.92498 0.93669 0.99328 1.21454 1.20271 1.21774 0.93919 0.91916 1.25892 0.95967 0.97321 0.99718 1.70037 1.25743 1.31418 1.28168 0.85580 0.77962 0.78169 0.79782 1.19461 1.21276 1.19241 1.21947 0.97989 0.97338 0.82769 1.19671 0.98428 0.94480 0.95840 1.21218 1.00332 0.94492 0.98212 1.21420 0.97968 1.00781 0.94467 1.21475 0.98284 0.95097 0.99951 1.21436 1.00066 0.95235 0.97769 1.21324 0.97597 1.00689 0.94517 0.92087 0.91229 0.92413 0.90713 0.90575 0.74439 0.91128 0.82803 0.88393 0.93558 0.92797 0.92433 0.92914 0.93833 0.89645 0.85660 0.84674 0.84400 0.84322 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.88 71.98 0.64 -1.54 16 2 C -0.05 -0.78 2.60 -11.54 -0.03 -0.81 16 3 H 0.10 1.24 7.88 -2.38 -0.02 1.22 16 4 C 0.13 2.38 4.81 86.38 0.42 2.79 16 5 N -0.68 -16.65 5.28 -464.39 -2.45 -19.10 16 6 C 0.52 16.79 7.78 87.27 0.68 17.47 16 7 O -0.52 -17.11 13.10 -3.25 -0.04 -17.15 16 8 C 0.49 19.98 7.74 87.27 0.68 20.65 16 9 O -0.56 -26.20 15.95 -3.27 -0.05 -26.26 16 10 N -0.57 -24.49 2.97 -820.48 -2.44 -26.93 16 11 C 0.05 1.70 6.27 86.36 0.54 2.24 16 12 C -0.12 -4.14 6.08 30.67 0.19 -3.95 16 13 C -0.11 -4.37 5.11 30.62 0.16 -4.21 16 14 C 0.04 1.99 2.25 -11.46 -0.03 1.97 16 15 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 16 C -0.54 -29.65 8.57 25.60 0.22 -29.43 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 18 C 0.01 0.59 5.30 84.65 0.45 1.04 16 19 N -0.92 -54.80 11.38 21.45 0.24 -54.56 16 20 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 C 0.12 6.13 5.38 86.36 0.46 6.60 16 25 C -0.08 -1.24 4.78 -19.87 -0.09 -1.33 16 26 C -0.12 -1.86 8.76 22.27 0.20 -1.66 16 27 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 28 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 29 C -0.13 -1.57 10.05 22.27 0.22 -1.34 16 30 C -0.12 -1.67 9.67 22.27 0.22 -1.46 16 31 H 0.06 0.90 7.38 -2.38 -0.02 0.88 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.94 7.18 -2.39 -0.02 0.92 16 34 H 0.07 1.46 7.59 -2.38 -0.02 1.44 16 35 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.42 9.64 7.14 -92.71 -0.66 8.98 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.16 5.10 3.78 -78.73 -0.30 4.81 16 39 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.09 5.02 5.17 -2.39 -0.01 5.01 16 46 H 0.13 1.72 7.16 -2.91 -0.02 1.70 16 47 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 48 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 49 H 0.14 1.13 8.06 -2.92 -0.02 1.11 16 50 H 0.13 1.41 7.95 -2.91 -0.02 1.38 16 Total: -1.00 -69.00 398.37 2.64 -66.36 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -0.01 Total: 27.44 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.36 Total: 4.16 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -4.64 Total: -100.59 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -0.09 Total: -43.41 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -69.00 2.64 -66.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261680309.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.164 kcal (2) G-P(sol) polarization free energy of solvation -68.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds