Wall clock time and date at job start Wed Apr 1 2020 03:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46928 * 2 1 4 4 C 1.52998 * 109.46989 * 119.99581 * 2 1 3 5 5 N 1.46502 * 109.47360 * 295.00209 * 4 2 1 6 6 C 1.34782 * 120.00166 * 180.02562 * 5 4 2 7 7 O 1.21350 * 119.99528 * 359.97438 * 6 5 4 8 8 C 1.49446 * 120.00084 * 179.97438 * 6 5 4 9 9 O 1.21356 * 119.99803 * 353.37756 * 8 6 5 10 10 N 1.34768 * 120.00057 * 173.37736 * 8 6 5 11 11 C 1.46923 * 120.63140 * 353.06161 * 10 8 6 12 12 C 1.53197 * 108.77603 * 126.41596 * 11 10 8 13 13 C 1.53036 * 109.34037 * 54.62030 * 12 11 10 14 14 C 1.53043 * 109.53781 * 298.68543 * 13 12 11 15 15 H 1.09000 * 109.49772 * 301.34791 * 14 13 12 16 16 C 1.50699 * 109.49861 * 181.28187 * 14 13 12 17 17 H 1.08009 * 119.99826 * 0.06421 * 16 14 13 18 18 C 1.37874 * 120.00391 * 180.34183 * 16 14 13 19 19 N 1.31511 * 119.99935 * 359.72505 * 18 16 14 20 20 Si 1.86803 * 120.00371 * 179.72468 * 18 16 14 21 21 H 1.48501 * 109.46889 * 59.99781 * 20 18 16 22 22 H 1.48493 * 109.47092 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46907 * 300.00065 * 20 18 16 24 24 C 1.46927 * 120.63303 * 173.08900 * 10 8 6 25 25 C 1.50694 * 109.47289 * 239.99576 * 2 1 3 26 26 C 1.38237 * 120.00356 * 299.73049 * 25 2 1 27 27 C 1.38235 * 120.00398 * 179.76350 * 26 25 2 28 28 C 1.38234 * 119.99661 * 0.50862 * 27 26 25 29 29 C 1.38233 * 120.00238 * 359.74141 * 28 27 26 30 30 C 1.38232 * 120.00035 * 119.99627 * 25 2 1 31 31 H 1.08996 * 109.46873 * 60.00009 * 1 2 3 32 32 H 1.09000 * 109.46721 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46720 * 300.00152 * 1 2 3 34 34 H 1.09007 * 109.47352 * 174.99984 * 4 2 1 35 35 H 1.09010 * 109.47442 * 55.00070 * 4 2 1 36 36 H 0.96996 * 120.00059 * 359.97438 * 5 4 2 37 37 H 1.08998 * 109.59171 * 246.19792 * 11 10 8 38 38 H 1.09003 * 109.58922 * 6.48999 * 11 10 8 39 39 H 1.08995 * 109.50150 * 174.58993 * 12 11 10 40 40 H 1.09009 * 109.49617 * 294.68452 * 12 11 10 41 41 H 1.08997 * 109.49188 * 178.64856 * 13 12 11 42 42 H 1.09001 * 109.43006 * 58.68768 * 13 12 11 43 43 H 0.97000 * 120.00590 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.59192 * 113.79627 * 24 10 8 45 45 H 1.08998 * 109.70190 * 353.44355 * 24 10 8 46 46 H 1.08009 * 119.99631 * 359.97438 * 26 25 2 47 47 H 1.07995 * 119.99735 * 180.22598 * 27 26 25 48 48 H 1.07999 * 119.99711 * 179.72844 * 28 27 26 49 49 H 1.08000 * 120.00440 * 179.97438 * 29 28 27 50 50 H 1.07996 * 120.00167 * 0.02562 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0355 2.4424 6 6 1.9964 -0.4129 3.6660 7 8 2.6268 -1.4436 3.7794 8 6 1.6015 0.3593 4.8831 9 8 1.0778 1.4479 4.7675 10 7 1.8270 -0.1533 6.1089 11 6 2.3188 -1.5288 6.2663 12 6 3.5805 -1.5050 7.1349 13 6 3.2741 -0.7923 8.4541 14 6 2.8549 0.6519 8.1703 15 1 3.6546 1.1646 7.6359 16 6 2.5838 1.3620 9.4716 17 1 2.6999 0.8363 10.4080 18 6 2.1820 2.6809 9.4667 19 7 2.0406 3.3209 8.3266 20 14 1.8386 3.5587 11.0795 21 1 3.0675 3.5611 11.9132 22 1 1.4257 4.9581 10.8031 23 1 0.7502 2.8549 11.8041 24 6 1.5850 0.6525 7.3134 25 6 2.0324 -0.7105 -1.2303 26 6 1.7031 -2.0356 -1.4463 27 6 2.1599 -2.6859 -2.5774 28 6 2.9547 -2.0141 -3.4873 29 6 3.2883 -0.6906 -3.2688 30 6 2.8271 -0.0387 -2.1403 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 3.1264 -0.7994 1.2057 35 1 1.6054 -1.7198 1.2953 36 1 1.1489 0.8595 2.3518 37 1 1.5543 -2.1374 6.7492 38 1 2.5545 -1.9469 5.2875 39 1 3.9010 -2.5265 7.3392 40 1 4.3737 -0.9725 6.6099 41 1 4.1636 -0.7951 9.0841 42 1 2.4645 -1.3114 8.9671 43 1 1.7583 4.2489 8.3231 44 1 0.7605 0.2218 7.8817 45 1 1.3373 1.6748 7.0280 46 1 1.0861 -2.5618 -0.7329 47 1 1.8996 -3.7200 -2.7478 48 1 3.3152 -2.5235 -4.3687 49 1 3.9096 -0.1658 -3.9795 50 1 3.0883 0.9951 -1.9694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261680310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:34 Heat of formation + Delta-G solvation = -42.540523 kcal Electronic energy + Delta-G solvation = -29841.224059 eV Core-core repulsion = 25833.269973 eV Total energy + Delta-G solvation = -4007.954086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58783 -39.80456 -38.31753 -36.88617 -36.31578 -33.62543 -33.04829 -31.70756 -31.22919 -29.73361 -29.69941 -27.36653 -25.54401 -24.96240 -23.71888 -22.92165 -22.09807 -21.77059 -20.62826 -20.05662 -18.76933 -17.43945 -17.10215 -16.55168 -16.22541 -15.94275 -15.52753 -15.33455 -15.16154 -14.73954 -14.56511 -14.39801 -13.94027 -13.78727 -13.69048 -13.53157 -13.41318 -13.11727 -12.90366 -12.70584 -12.57844 -12.37945 -12.07988 -11.79881 -11.69946 -11.57697 -11.39751 -11.15556 -11.04181 -10.96292 -10.71093 -10.46485 -10.26982 -10.05092 -9.87970 -9.27107 -9.22597 -9.20825 -9.10730 -9.04655 -8.51760 -8.40630 -7.81786 -6.01786 -4.09973 1.01693 1.09150 1.80163 2.70331 3.31614 3.37105 3.38820 3.46416 3.65525 3.95614 4.33126 4.38356 4.42140 4.63838 4.69120 4.74390 4.77214 4.82131 5.01568 5.16584 5.22062 5.28646 5.37547 5.46619 5.55248 5.63726 5.69232 5.70553 5.71522 5.76635 5.88092 5.90336 6.08028 6.16290 6.20864 6.27169 6.31044 6.40388 6.61146 6.63207 6.68187 6.76331 6.87739 7.00319 7.05717 7.18789 7.24620 7.59610 7.83588 7.95802 8.00520 8.17480 8.35741 8.58432 8.93843 9.55427 11.03817 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.002090 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.223459 B =13396.701243 C =14098.596529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 H 0.089 0.911 4 C 0.126 3.874 5 N -0.703 5.703 6 C 0.512 3.488 7 O -0.514 6.514 8 C 0.495 3.505 9 O -0.525 6.525 10 N -0.567 5.567 11 C 0.050 3.950 12 C -0.127 4.127 13 C -0.113 4.113 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.519 4.519 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.883 5.883 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.108 3.892 25 C -0.074 4.074 26 C -0.112 4.112 27 C -0.119 4.119 28 C -0.124 4.124 29 C -0.119 4.119 30 C -0.113 4.113 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.413 0.587 37 H 0.054 0.946 38 H 0.144 0.856 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.264 0.736 44 H 0.048 0.952 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 -10.356 -22.667 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 H 0.107 0.893 4 C 0.002 3.998 5 N -0.357 5.357 6 C 0.295 3.705 7 O -0.392 6.392 8 C 0.276 3.724 9 O -0.403 6.403 10 N -0.298 5.298 11 C -0.072 4.072 12 C -0.166 4.166 13 C -0.151 4.151 14 C 0.022 3.978 15 H 0.047 0.953 16 C -0.558 4.558 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.521 5.521 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.012 4.012 25 C -0.074 4.074 26 C -0.130 4.130 27 C -0.137 4.137 28 C -0.142 4.142 29 C -0.137 4.137 30 C -0.131 4.131 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.250 0.750 37 H 0.072 0.928 38 H 0.160 0.840 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.955 -10.323 -22.696 24.952 hybrid contribution -0.348 0.864 0.902 1.296 sum -1.303 -9.459 -21.794 23.794 Atomic orbital electron populations 1.21901 0.93394 1.02674 1.02498 1.20390 0.96890 0.99821 0.91302 0.89283 1.21497 1.00679 0.95251 0.82348 1.45840 1.56749 1.28161 1.04966 1.20782 0.79540 0.85131 0.85094 1.90305 1.39812 1.24420 1.84629 1.19751 0.81692 0.86527 0.84479 1.90756 1.42559 1.20996 1.85978 1.48437 1.60775 1.14812 1.05793 1.23082 0.95885 0.82473 1.05749 1.21853 0.97313 0.99888 0.97501 1.21665 1.00152 0.98317 0.94955 1.18970 0.93211 0.90596 0.95072 0.95280 1.21060 1.46690 0.95982 0.92017 0.92296 1.25062 0.95182 0.97500 0.96353 1.69858 1.46345 1.11132 1.24749 0.86619 0.78708 0.78650 0.83810 1.20264 1.21255 1.20224 1.22485 0.99428 0.97292 0.81964 1.19651 0.97819 0.94254 0.95692 1.21054 1.00079 0.94208 0.97644 1.21156 0.98028 0.99949 0.94521 1.21170 0.98624 0.94905 0.99491 1.21152 1.00005 0.94981 0.97588 1.21109 0.97594 1.00049 0.94371 0.91992 0.92078 0.91725 0.90783 0.90772 0.75021 0.92763 0.83998 0.92289 0.92350 0.93077 0.93260 0.92575 0.93404 0.85869 0.85907 0.86045 0.86208 0.86067 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.88 37.16 0.33 -0.76 16 2 C -0.07 -0.52 2.60 -91.77 -0.24 -0.76 16 3 H 0.09 0.67 7.88 -51.93 -0.41 0.26 16 4 C 0.13 1.27 4.80 -4.04 -0.02 1.25 16 5 N -0.70 -8.87 5.27 -60.72 -0.32 -9.19 16 6 C 0.51 8.41 7.78 -11.58 -0.09 8.32 16 7 O -0.51 -8.83 13.10 5.50 0.07 -8.76 16 8 C 0.49 10.00 7.74 -11.59 -0.09 9.91 16 9 O -0.53 -11.90 15.95 5.49 0.09 -11.81 16 10 N -0.57 -11.93 2.97 -173.27 -0.51 -12.44 16 11 C 0.05 0.90 6.27 -3.71 -0.02 0.88 16 12 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 13 C -0.11 -2.36 5.11 -26.69 -0.14 -2.50 16 14 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.52 -14.12 8.57 -34.44 -0.30 -14.41 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.88 -25.52 11.38 55.43 0.63 -24.89 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.11 2.64 5.38 -3.71 -0.02 2.63 16 25 C -0.07 -0.60 4.78 -104.63 -0.50 -1.10 16 26 C -0.11 -0.88 8.76 -39.58 -0.35 -1.23 16 27 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 28 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 29 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 30 C -0.11 -0.89 9.67 -39.58 -0.38 -1.27 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.43 7.41 -51.93 -0.38 0.05 16 33 H 0.06 0.50 7.18 -51.93 -0.37 0.13 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.74 7.56 -51.92 -0.39 0.35 16 36 H 0.41 4.88 7.14 -40.82 -0.29 4.58 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.14 2.49 3.78 -56.75 -0.21 2.27 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.12 3.44 5.17 -51.93 -0.27 3.17 16 46 H 0.12 0.85 7.17 -52.48 -0.38 0.48 16 47 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 49 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 50 H 0.12 0.81 7.95 -52.49 -0.42 0.39 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -31.17 398.37 -10.27 -41.44 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.74 Total: 6.35 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.47 Total: -2.90 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.20 Total: -46.52 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.16 Total: -20.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.17 -10.27 -41.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261680310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.096 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds