Wall clock time and date at job start Wed Apr 1 2020 03:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47648 * 2 1 4 4 C 1.46495 * 120.00384 * 259.72896 * 3 2 1 5 5 C 1.50699 * 109.46698 * 273.36728 * 4 3 2 6 6 C 1.38255 * 120.00048 * 4.60275 * 5 4 3 7 7 C 1.38216 * 119.99788 * 179.97438 * 6 5 4 8 8 C 1.38260 * 119.99959 * 0.02701 * 7 6 5 9 9 C 1.38208 * 120.00196 * 359.97438 * 8 7 6 10 10 C 1.38222 * 119.99730 * 184.32929 * 5 4 3 11 11 C 1.50695 * 119.99980 * 359.97438 * 10 5 4 12 12 C 1.34775 * 119.99569 * 79.71928 * 3 2 1 13 13 O 1.21351 * 120.00078 * 180.92584 * 12 3 2 14 14 C 1.49450 * 120.00365 * 0.92823 * 12 3 2 15 15 O 1.21351 * 119.99604 * 3.86916 * 14 12 3 16 16 N 1.34770 * 120.00370 * 183.86886 * 14 12 3 17 17 C 1.46505 * 120.00192 * 185.05083 * 16 14 12 18 18 C 1.52997 * 109.47324 * 184.51526 * 17 16 14 19 19 C 1.50698 * 115.55092 * 304.35528 * 18 17 16 20 20 H 1.07999 * 120.00264 * 2.30569 * 19 18 17 21 21 C 1.37883 * 119.99621 * 182.03823 * 19 18 17 22 22 N 1.31508 * 120.00082 * 353.14716 * 21 19 18 23 23 Si 1.86804 * 119.99575 * 173.15253 * 21 19 18 24 24 H 1.48501 * 109.47076 * 89.99811 * 23 21 19 25 25 H 1.48504 * 109.46876 * 209.99672 * 23 21 19 26 26 H 1.48496 * 109.47276 * 329.99265 * 23 21 19 27 27 C 1.53008 * 117.49367 * 90.01734 * 18 17 16 28 28 C 1.52998 * 117.49817 * 158.67428 * 18 17 16 29 29 H 1.08997 * 109.47621 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46750 * 299.99850 * 1 2 3 31 31 H 1.09005 * 109.47308 * 59.99671 * 1 2 3 32 32 H 1.09009 * 109.47125 * 240.00453 * 2 1 3 33 33 H 1.08998 * 109.47074 * 120.00657 * 2 1 3 34 34 H 1.08998 * 109.46977 * 33.36407 * 4 3 2 35 35 H 1.08998 * 109.47533 * 153.36412 * 4 3 2 36 36 H 1.07998 * 120.00221 * 0.02562 * 6 5 4 37 37 H 1.07999 * 119.99953 * 179.97438 * 7 6 5 38 38 H 1.08006 * 119.99743 * 179.97438 * 8 7 6 39 39 H 1.08000 * 119.99713 * 179.97438 * 9 8 7 40 40 H 1.08995 * 109.47444 * 84.60976 * 11 10 5 41 41 H 1.09003 * 109.46771 * 204.60907 * 11 10 5 42 42 H 1.08996 * 109.47400 * 324.60415 * 11 10 5 43 43 H 0.96997 * 119.99982 * 5.05929 * 16 14 12 44 44 H 1.08998 * 109.46625 * 64.51847 * 17 16 14 45 45 H 1.08993 * 109.47029 * 304.52382 * 17 16 14 46 46 H 0.97000 * 119.99949 * 185.00292 * 22 21 19 47 47 H 1.09004 * 117.49662 * 215.00259 * 27 18 17 48 48 H 1.08995 * 117.49780 * 0.02562 * 27 18 17 49 49 H 1.09000 * 117.49925 * 359.97438 * 28 18 17 50 50 H 1.09006 * 117.49521 * 144.97641 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4760 1.9964 -1.2483 5 6 3.9315 1.6714 -1.4644 6 6 4.5865 0.8204 -0.5936 7 6 5.9213 0.5219 -0.7922 8 6 6.6017 1.0748 -1.8613 9 6 5.9470 1.9255 -2.7318 10 6 4.6102 2.2196 -2.5365 11 6 3.8945 3.1418 -3.4895 12 6 2.0467 2.0859 1.1485 13 8 2.4355 3.2354 1.1456 14 6 1.5993 1.4517 2.4256 15 8 1.2772 0.2818 2.4418 16 7 1.5535 2.1789 3.5594 17 6 1.2220 1.5323 4.8315 18 6 1.1280 2.5907 5.9323 19 6 2.3486 3.4570 6.1071 20 1 3.1977 3.3323 5.4515 21 6 2.3792 4.4126 7.1006 22 7 1.2983 4.6614 7.8072 23 14 3.9561 5.3539 7.4428 24 1 3.9921 6.5800 6.6057 25 1 4.0049 5.7327 8.8779 26 1 5.1245 4.4974 7.1169 27 6 -0.2375 3.2366 6.1764 28 6 0.3279 2.2357 7.1872 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.8895 1.6082 -2.0810 35 1 2.3501 3.0774 -1.1881 36 1 4.0549 0.3882 0.2412 37 1 6.4331 -0.1425 -0.1117 38 1 7.6449 0.8418 -2.0162 39 1 6.4786 2.3576 -3.5666 40 1 3.9052 4.1561 -3.0905 41 1 4.3974 3.1264 -4.4564 42 1 2.8635 2.8099 -3.6109 43 1 1.7399 3.1304 3.5330 44 1 1.9991 0.8116 5.0860 45 1 0.2656 1.0179 4.7393 46 1 1.2983 5.3825 8.4560 47 1 -0.2528 4.2880 6.4636 48 1 -1.0687 2.9071 5.5531 49 1 -0.1317 1.2482 7.2284 50 1 0.6848 2.6283 8.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324124348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:31 Heat of formation + Delta-G solvation = -4.665803 kcal Electronic energy + Delta-G solvation = -30497.149000 eV Core-core repulsion = 26490.837285 eV Total energy + Delta-G solvation = -4006.311715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.84532 -39.54384 -38.19482 -36.90167 -36.21557 -33.63470 -33.24189 -31.98552 -31.58387 -30.08573 -27.85124 -27.07157 -26.36608 -25.42319 -23.95525 -22.65633 -21.78231 -20.95855 -20.71264 -19.78458 -18.97769 -17.44246 -16.99584 -16.73811 -16.17320 -15.87354 -15.41222 -15.22896 -15.16666 -14.90967 -14.44659 -14.29023 -14.16015 -13.83573 -13.49966 -13.29672 -13.20884 -13.02067 -12.83039 -12.57113 -12.51974 -12.42244 -12.14218 -12.09038 -11.89323 -11.24303 -11.20963 -11.17123 -11.14276 -11.07863 -10.84549 -10.68707 -10.37464 -10.04553 -9.58361 -9.27776 -9.01502 -8.91107 -8.87513 -8.70477 -8.61773 -8.39439 -8.12794 -6.05522 -4.13255 1.20004 1.27230 1.71117 2.51368 3.25133 3.32690 3.36801 3.49428 3.60562 3.75661 4.32753 4.57143 4.66605 4.71430 4.77558 4.89278 5.00355 5.03851 5.06392 5.14069 5.26946 5.35549 5.40623 5.43549 5.48329 5.55474 5.61389 5.69988 5.77631 5.90469 5.94368 5.94660 6.01301 6.18646 6.21996 6.29800 6.36354 6.40704 6.41079 6.55219 6.57483 6.75802 6.87735 6.99117 7.05729 7.14646 7.18076 7.57924 7.70732 7.89566 8.08193 8.13387 8.33768 8.44240 8.82558 9.43516 10.89224 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.002950 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.071124 B = 9489.929958 C =10840.361592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.094 3.906 3 N -0.589 5.589 4 C 0.153 3.847 5 C -0.099 4.099 6 C -0.103 4.103 7 C -0.122 4.122 8 C -0.121 4.121 9 C -0.120 4.120 10 C -0.082 4.082 11 C -0.117 4.117 12 C 0.506 3.494 13 O -0.512 6.512 14 C 0.496 3.504 15 O -0.532 6.532 16 N -0.668 5.668 17 C 0.161 3.839 18 C -0.002 4.002 19 C -0.484 4.484 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.875 5.875 23 Si 0.896 3.104 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.186 4.186 28 C -0.177 4.177 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.419 0.581 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.261 0.739 47 H 0.115 0.885 48 H 0.043 0.957 49 H 0.047 0.953 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.256 -7.623 -21.045 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.027 4.027 3 N -0.323 5.323 4 C 0.031 3.969 5 C -0.100 4.100 6 C -0.121 4.121 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.138 4.138 10 C -0.082 4.082 11 C -0.174 4.174 12 C 0.289 3.711 13 O -0.386 6.386 14 C 0.276 3.724 15 O -0.412 6.412 16 N -0.318 5.318 17 C 0.039 3.961 18 C -0.003 4.003 19 C -0.521 4.521 20 H 0.081 0.919 21 C -0.138 4.138 22 N -0.512 5.512 23 Si 0.724 3.276 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.224 4.224 28 C -0.216 4.216 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.257 0.743 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.133 0.867 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.202 -7.732 -20.784 22.405 hybrid contribution 0.903 0.933 0.286 1.330 sum 4.105 -6.798 -20.497 21.982 Atomic orbital electron populations 1.22089 0.95464 1.02331 1.01864 1.22127 0.95154 0.80980 1.04468 1.47800 1.62600 1.14979 1.06948 1.20422 0.90751 1.00120 0.85600 1.20100 0.96219 0.98130 0.95575 1.21063 0.94677 0.97557 0.98850 1.21152 0.94601 1.00366 0.97930 1.21123 0.99747 0.97714 0.95300 1.20974 0.93941 0.98990 0.99922 1.19642 0.94219 0.98335 0.96034 1.20822 1.00126 0.98652 0.97756 1.20493 0.79188 0.86180 0.85218 1.90773 1.45115 1.16842 1.85895 1.19922 0.80399 0.86974 0.85129 1.90619 1.48812 1.16102 1.85677 1.45990 1.65345 1.13979 1.06513 1.21067 0.99059 0.95074 0.80904 1.19164 0.92421 0.95979 0.92694 1.20528 0.99337 1.17402 1.14882 0.91892 1.24990 0.96515 0.96953 0.95391 1.69987 1.26858 1.29706 1.24678 0.86511 0.83563 0.80050 0.77507 1.20557 1.21133 1.19765 1.22954 0.95677 1.01014 1.02734 1.22747 1.05223 0.96026 0.97575 0.91564 0.91799 0.93423 0.91082 0.86795 0.88977 0.88123 0.85981 0.86126 0.86234 0.86155 0.90803 0.91555 0.91442 0.74296 0.91950 0.92538 0.92863 0.86700 0.93881 0.93470 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.63 37.16 0.36 -1.37 16 2 C 0.09 1.05 4.71 -4.04 -0.02 1.03 16 3 N -0.59 -7.51 1.36 -175.57 -0.24 -7.75 16 4 C 0.15 1.67 4.52 -5.20 -0.02 1.65 16 5 C -0.10 -1.15 5.88 -104.62 -0.61 -1.76 16 6 C -0.10 -1.27 9.16 -39.58 -0.36 -1.64 16 7 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 8 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 9 C -0.12 -1.17 9.68 -39.59 -0.38 -1.56 16 10 C -0.08 -0.84 5.88 -104.62 -0.62 -1.45 16 11 C -0.12 -0.88 9.44 36.00 0.34 -0.54 16 12 C 0.51 8.23 7.47 -11.59 -0.09 8.14 16 13 O -0.51 -9.59 16.02 5.50 0.09 -9.50 16 14 C 0.50 8.70 7.35 -11.59 -0.09 8.62 16 15 O -0.53 -9.35 11.76 5.50 0.06 -9.29 16 16 N -0.67 -12.87 5.40 -60.73 -0.33 -13.20 16 17 C 0.16 3.30 5.58 -4.04 -0.02 3.28 16 18 C 0.00 -0.04 2.24 -155.66 -0.35 -0.39 16 19 C -0.48 -12.53 8.49 -34.44 -0.29 -12.82 16 20 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 21 C 0.06 1.68 5.25 -17.82 -0.09 1.58 16 22 N -0.88 -23.40 8.64 55.43 0.48 -22.92 16 23 Si 0.90 20.66 29.55 -169.99 -5.02 15.63 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 C -0.19 -4.42 9.36 -26.69 -0.25 -4.67 16 28 C -0.18 -4.20 9.38 -26.69 -0.25 -4.45 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.86 6.57 -51.93 -0.34 0.52 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.64 8.00 -51.92 -0.42 0.22 16 33 H 0.11 1.47 5.59 -51.93 -0.29 1.18 16 34 H 0.09 0.76 7.68 -51.93 -0.40 0.36 16 35 H 0.10 1.19 7.21 -51.93 -0.37 0.82 16 36 H 0.12 1.58 6.12 -52.49 -0.32 1.26 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 42 H 0.07 0.44 6.98 -51.93 -0.36 0.07 16 43 H 0.42 8.50 7.49 -40.82 -0.31 8.20 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 46 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 47 H 0.11 3.02 6.20 -51.93 -0.32 2.70 16 48 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.11 2.83 6.38 -51.93 -0.33 2.50 16 LS Contribution 401.65 15.07 6.05 6.05 Total: -1.00 -28.52 401.65 -10.10 -38.62 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -7.65 Total: 12.07 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -3.55 Total: -9.73 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.09 Total: -43.86 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.15 Total: -18.79 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.52 -10.10 -38.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324124348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.950 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds