Wall clock time and date at job start Wed Apr 1 2020 03:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47011 * 2 1 4 4 C 1.46491 * 120.00020 * 259.92697 * 3 2 1 5 5 C 1.50704 * 109.47478 * 270.00431 * 4 3 2 6 6 C 1.38236 * 119.99855 * 269.72530 * 5 4 3 7 7 C 1.38231 * 119.99752 * 179.73936 * 6 5 4 8 8 C 1.38235 * 120.00321 * 0.55522 * 7 6 5 9 9 C 1.50695 * 120.00288 * 179.72342 * 8 7 6 10 10 C 1.38231 * 119.99582 * 359.69783 * 8 7 6 11 11 C 1.38232 * 120.00352 * 0.02774 * 10 8 7 12 12 C 1.34775 * 119.99867 * 79.93011 * 3 2 1 13 13 O 1.21353 * 119.99932 * 180.43031 * 12 3 2 14 14 C 1.49449 * 120.00298 * 0.43035 * 12 3 2 15 15 O 1.21344 * 120.00071 * 4.33437 * 14 12 3 16 16 N 1.34773 * 120.00043 * 184.33087 * 14 12 3 17 17 C 1.46503 * 119.99916 * 185.04741 * 16 14 12 18 18 C 1.53003 * 109.47012 * 184.84081 * 17 16 14 19 19 C 1.50699 * 115.54984 * 305.53648 * 18 17 16 20 20 H 1.08005 * 120.00008 * 95.30910 * 19 18 17 21 21 C 1.37881 * 120.00231 * 275.03874 * 19 18 17 22 22 N 1.31518 * 119.99788 * 355.37612 * 21 19 18 23 23 Si 1.86794 * 120.00191 * 175.38200 * 21 19 18 24 24 H 1.48503 * 109.47314 * 59.99560 * 23 21 19 25 25 H 1.48499 * 109.47217 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47184 * 299.99961 * 23 21 19 27 27 C 1.53002 * 117.50181 * 91.21076 * 18 17 16 28 28 C 1.52999 * 117.49836 * 159.87113 * 18 17 16 29 29 H 1.08998 * 109.46683 * 60.00469 * 1 2 3 30 30 H 1.08999 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47245 * 300.00239 * 1 2 3 32 32 H 1.08994 * 109.47677 * 239.99701 * 2 1 3 33 33 H 1.09001 * 109.47043 * 119.99911 * 2 1 3 34 34 H 1.09006 * 109.46936 * 29.99879 * 4 3 2 35 35 H 1.08997 * 109.47513 * 150.00153 * 4 3 2 36 36 H 1.08006 * 119.99936 * 359.97438 * 6 5 4 37 37 H 1.08002 * 119.99809 * 180.27294 * 7 6 5 38 38 H 1.09001 * 109.47158 * 269.97605 * 9 8 7 39 39 H 1.09006 * 109.46939 * 29.97470 * 9 8 7 40 40 H 1.08996 * 109.47107 * 149.97780 * 9 8 7 41 41 H 1.08000 * 119.99786 * 180.02562 * 10 8 7 42 42 H 1.08002 * 120.00126 * 179.97438 * 11 10 8 43 43 H 0.97001 * 120.00115 * 5.04325 * 16 14 12 44 44 H 1.08996 * 109.47313 * 64.83640 * 17 16 14 45 45 H 1.08999 * 109.47262 * 304.83609 * 17 16 14 46 46 H 0.96997 * 120.00033 * 184.99624 * 22 21 19 47 47 H 1.08995 * 117.49601 * 215.00403 * 27 18 17 48 48 H 1.09003 * 117.49700 * 0.02562 * 27 18 17 49 49 H 1.08999 * 117.50230 * 359.97164 * 28 18 17 50 50 H 1.09003 * 117.49791 * 144.97299 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4717 1.9979 -1.2491 5 6 3.9461 1.7430 -1.4291 6 6 4.8691 2.6414 -0.9272 7 6 6.2215 2.4048 -1.0875 8 6 6.6509 1.2758 -1.7598 9 6 8.1252 1.0212 -1.9400 10 6 5.7277 0.3802 -2.2662 11 6 4.3754 0.6138 -2.1009 12 6 2.0505 2.0846 1.1492 13 8 2.4477 3.2313 1.1479 14 6 1.5971 1.4524 2.4253 15 8 1.2746 0.2827 2.4417 16 7 1.5466 2.1813 3.5577 17 6 1.2091 1.5368 4.8293 18 6 1.1026 2.5979 5.9265 19 6 2.3076 3.4882 6.0888 20 1 2.3395 4.4489 5.5964 21 6 3.3671 3.0787 6.8704 22 7 3.2890 1.9535 7.5468 23 14 4.9134 4.1220 6.9686 24 1 4.5714 5.4648 7.5028 25 1 5.8960 3.4672 7.8691 26 1 5.5018 4.2640 5.6125 27 6 -0.2731 3.2182 6.1782 28 6 0.3190 2.2326 7.1888 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9236 1.5668 -2.0869 35 1 2.2907 3.0720 -1.2107 36 1 4.5336 3.5261 -0.4064 37 1 6.9427 3.1045 -0.6916 38 1 8.4621 1.4799 -2.8696 39 1 8.6734 1.4524 -1.1024 40 1 8.3063 -0.0530 -1.9784 41 1 6.0631 -0.5021 -2.7911 42 1 3.6541 -0.0858 -2.4970 43 1 1.7337 3.1328 3.5309 44 1 1.9874 0.8201 5.0912 45 1 0.2555 1.0180 4.7319 46 1 4.0033 1.7012 8.1525 47 1 -0.3066 4.2703 6.4612 48 1 -1.1025 2.8701 5.5625 49 1 -0.1211 1.2366 7.2375 50 1 0.6753 2.6361 8.1367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324389217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:34 Heat of formation + Delta-G solvation = -33.363324 kcal Electronic energy + Delta-G solvation = -30390.372669 eV Core-core repulsion = 26382.816536 eV Total energy + Delta-G solvation = -4007.556133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.92902 -40.41690 -39.50034 -38.49504 -37.39034 -34.98723 -34.18718 -33.98685 -31.85844 -31.53277 -29.61814 -28.52159 -27.42525 -26.15005 -24.82403 -23.73083 -23.23509 -22.87113 -21.76513 -21.42328 -20.49218 -18.78034 -18.22229 -17.84801 -17.37408 -16.92001 -16.71647 -16.55319 -16.30788 -16.07645 -16.03868 -15.54583 -15.40362 -14.77718 -14.68677 -14.56480 -14.39906 -14.30954 -13.94891 -13.63956 -13.55481 -13.51969 -13.30619 -13.08624 -12.97063 -12.85291 -12.80507 -12.69356 -12.41864 -12.29293 -12.20477 -12.01612 -11.86139 -11.80782 -11.41284 -10.98299 -10.51746 -10.43277 -10.13077 -9.96606 -9.84645 -9.77527 -9.47372 -8.12658 -6.26088 0.26047 0.43366 0.48261 1.39105 1.42074 1.45083 1.47580 2.19527 2.39184 2.53372 2.89781 3.14874 3.36068 3.57187 3.80527 3.85032 4.06073 4.10653 4.15351 4.17035 4.20429 4.42317 4.50015 4.50590 4.58218 4.63862 4.64036 4.67889 4.68581 4.79930 4.83128 4.85835 4.93024 4.94183 5.01858 5.08890 5.16213 5.25438 5.26682 5.27615 5.45018 5.46547 5.48648 5.55672 5.64390 5.68033 5.68705 5.75091 5.99169 6.10117 6.34028 6.40083 6.76938 6.81210 7.04929 7.43706 8.93693 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010040 B = 0.003354 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.165078 B = 8345.667332 C =10317.533682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.571 5.571 4 C 0.153 3.847 5 C -0.125 4.125 6 C -0.114 4.114 7 C -0.143 4.143 8 C -0.092 4.092 9 C -0.114 4.114 10 C -0.130 4.130 11 C -0.099 4.099 12 C 0.506 3.494 13 O -0.543 6.543 14 C 0.492 3.508 15 O -0.537 6.537 16 N -0.671 5.671 17 C 0.177 3.823 18 C -0.002 4.002 19 C -0.509 4.509 20 H 0.056 0.944 21 C 0.033 3.967 22 N -0.901 5.901 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.286 1.286 26 H -0.279 1.279 27 C -0.183 4.183 28 C -0.145 4.145 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.412 0.588 44 H 0.038 0.962 45 H 0.058 0.942 46 H 0.260 0.740 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.076 0.924 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 -4.921 -22.569 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 N -0.303 5.303 4 C 0.032 3.968 5 C -0.127 4.127 6 C -0.132 4.132 7 C -0.161 4.161 8 C -0.092 4.092 9 C -0.170 4.170 10 C -0.148 4.148 11 C -0.117 4.117 12 C 0.289 3.711 13 O -0.421 6.421 14 C 0.273 3.727 15 O -0.417 6.417 16 N -0.321 5.321 17 C 0.054 3.946 18 C -0.003 4.003 19 C -0.547 4.547 20 H 0.074 0.926 21 C -0.169 4.169 22 N -0.538 5.538 23 Si 0.767 3.233 24 H -0.194 1.194 25 H -0.211 1.211 26 H -0.205 1.205 27 C -0.220 4.220 28 C -0.183 4.183 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.126 0.874 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.248 0.752 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.094 0.906 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.981 -5.302 -22.455 23.093 hybrid contribution 1.107 1.161 0.943 1.861 sum 2.088 -4.142 -21.512 22.007 Atomic orbital electron populations 1.22034 0.94789 1.03072 1.01215 1.22171 0.95499 0.80103 1.04990 1.48003 1.60701 1.15222 1.06343 1.20647 0.90581 1.00007 0.85558 1.20264 0.95690 0.96331 1.00370 1.21255 0.93777 0.99610 0.98587 1.21244 0.95642 0.98530 1.00678 1.20310 0.97618 0.94324 0.96948 1.20843 0.90096 1.03213 1.02853 1.21361 0.92813 0.99978 1.00657 1.21341 0.96587 0.96080 0.97708 1.20188 0.79490 0.85956 0.85506 1.90717 1.47047 1.18118 1.86196 1.20307 0.79921 0.86894 0.85565 1.90615 1.48805 1.16270 1.85997 1.45835 1.66022 1.13549 1.06682 1.20761 0.97968 0.94496 0.81399 1.19063 0.90669 0.96582 0.93969 1.20589 1.00448 1.02724 1.30913 0.92568 1.25576 1.00434 0.95695 0.95165 1.70070 1.34024 1.23137 1.26575 0.85881 0.80227 0.79419 0.77743 1.19426 1.21120 1.20451 1.23051 0.96971 0.98000 1.03942 1.22381 1.03698 0.97831 0.94427 0.91449 0.90155 0.94898 0.87473 0.89532 0.85430 0.89896 0.87449 0.85946 0.89888 0.91729 0.90275 0.83518 0.83143 0.75158 0.94408 0.92382 0.93062 0.90100 0.89159 0.90581 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.63 71.98 0.69 -2.43 16 2 C 0.09 2.04 5.74 86.38 0.50 2.53 16 3 N -0.57 -14.71 2.49 -827.74 -2.06 -16.77 16 4 C 0.15 3.14 5.49 85.64 0.47 3.62 16 5 C -0.13 -2.81 5.46 -19.86 -0.11 -2.92 16 6 C -0.11 -3.05 9.70 22.27 0.22 -2.83 16 7 C -0.14 -3.47 9.70 22.27 0.22 -3.26 16 8 C -0.09 -1.85 5.88 -19.87 -0.12 -1.96 16 9 C -0.11 -1.64 10.01 71.23 0.71 -0.93 16 10 C -0.13 -2.28 9.70 22.27 0.22 -2.07 16 11 C -0.10 -1.75 9.70 22.27 0.22 -1.53 16 12 C 0.51 17.36 7.64 87.27 0.67 18.03 16 13 O -0.54 -20.86 15.64 -3.25 -0.05 -20.91 16 14 C 0.49 18.85 7.35 87.27 0.64 19.49 16 15 O -0.54 -20.81 11.75 -3.23 -0.04 -20.84 16 16 N -0.67 -27.89 5.40 -464.42 -2.51 -30.40 16 17 C 0.18 7.94 5.60 86.38 0.48 8.42 16 18 C 0.00 -0.10 1.62 -52.93 -0.09 -0.19 16 19 C -0.51 -26.71 8.07 25.60 0.21 -26.50 16 20 H 0.06 2.94 7.82 -2.91 -0.02 2.91 16 21 C 0.03 1.76 5.43 84.66 0.46 2.22 16 22 N -0.90 -50.55 12.65 21.45 0.27 -50.27 16 23 Si 0.94 43.50 29.54 68.60 2.03 45.53 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 27 C -0.18 -7.42 9.93 30.62 0.30 -7.12 16 28 C -0.15 -6.56 9.18 30.62 0.28 -6.28 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.03 0.87 6.57 -2.39 -0.02 0.86 16 32 H 0.11 1.54 8.00 -2.39 -0.02 1.52 16 33 H 0.09 2.43 5.60 -2.39 -0.01 2.42 16 34 H 0.13 1.61 8.02 -2.38 -0.02 1.59 16 35 H 0.08 1.92 7.36 -2.39 -0.02 1.90 16 36 H 0.11 3.26 7.63 -2.91 -0.02 3.24 16 37 H 0.12 2.76 8.06 -2.91 -0.02 2.73 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.96 8.09 -2.38 -0.02 0.94 16 40 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 41 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.41 17.48 7.44 -92.71 -0.69 16.80 16 44 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 45 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 46 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 47 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 48 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 49 H 0.08 3.20 8.14 -2.39 -0.02 3.19 16 50 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -64.08 414.90 3.86 -60.22 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.25 Total: 37.15 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.97 Total: -3.70 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -4.30 Total: -97.44 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.09 Total: -41.76 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -64.08 3.86 -60.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324389217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.856 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds