Wall clock time and date at job start Wed Apr 1 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47203 * 2 1 4 4 C 1.52999 * 109.47151 * 120.00099 * 2 1 3 5 5 N 1.46500 * 109.47140 * 295.00202 * 4 2 1 6 6 C 1.34777 * 119.99755 * 179.97438 * 5 4 2 7 7 O 1.21352 * 119.99975 * 0.02562 * 6 5 4 8 8 C 1.49448 * 119.99824 * 179.97438 * 6 5 4 9 9 O 1.21347 * 120.00321 * 353.07333 * 8 6 5 10 10 N 1.34785 * 119.99887 * 173.07294 * 8 6 5 11 11 C 1.46920 * 120.63059 * 1.67669 * 10 8 6 12 12 C 1.52757 * 109.01034 * 233.58659 * 11 10 8 13 13 C 1.53049 * 109.38130 * 305.58634 * 12 11 10 14 14 C 1.50695 * 109.44729 * 181.25360 * 13 12 11 15 15 H 1.08007 * 119.99812 * 239.93873 * 14 13 12 16 16 C 1.37872 * 120.00328 * 59.93954 * 14 13 12 17 17 N 1.31516 * 120.00161 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99997 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47254 * 60.00500 * 18 16 14 20 20 H 1.48504 * 109.47014 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47446 * 300.00156 * 18 16 14 22 22 C 1.53043 * 109.53337 * 61.23956 * 13 12 11 23 23 C 1.46923 * 120.62993 * 181.95886 * 10 8 6 24 24 C 1.50702 * 109.47179 * 240.00464 * 2 1 3 25 25 C 1.38233 * 120.00097 * 119.99792 * 24 2 1 26 26 C 1.38239 * 119.99574 * 179.97438 * 25 24 2 27 27 C 1.38227 * 120.00490 * 359.97438 * 26 25 24 28 28 C 1.38243 * 119.99833 * 359.97438 * 27 26 25 29 29 C 1.38235 * 120.00055 * 0.07640 * 28 27 26 30 30 H 1.08998 * 109.47450 * 59.99881 * 1 2 3 31 31 H 1.08997 * 109.47660 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47191 * 300.00056 * 1 2 3 33 33 H 1.09002 * 109.46716 * 55.00156 * 4 2 1 34 34 H 1.08995 * 109.47160 * 174.99553 * 4 2 1 35 35 H 0.96993 * 120.00154 * 359.97438 * 5 4 2 36 36 H 1.09007 * 109.58575 * 353.41797 * 11 10 8 37 37 H 1.09004 * 109.58998 * 113.84079 * 11 10 8 38 38 H 1.08999 * 109.56733 * 185.55523 * 12 11 10 39 39 H 1.08997 * 109.36277 * 65.49595 * 12 11 10 40 40 H 1.09002 * 109.45639 * 301.22282 * 13 12 11 41 41 H 0.96998 * 120.00702 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.49385 * 178.68606 * 22 13 12 43 43 H 1.08998 * 109.52713 * 58.60361 * 22 13 12 44 44 H 1.09009 * 109.58394 * 246.15774 * 23 10 8 45 45 H 1.09008 * 109.58647 * 6.43264 * 23 10 8 46 46 H 1.07996 * 119.99996 * 359.97438 * 25 24 2 47 47 H 1.08001 * 119.99180 * 180.02562 * 26 25 24 48 48 H 1.07998 * 120.00157 * 179.71739 * 27 26 25 49 49 H 1.07999 * 119.99896 * 179.97438 * 28 27 26 50 50 H 1.07997 * 119.99876 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0353 2.4424 6 6 1.9955 -0.4137 3.6659 7 8 2.6259 -1.4445 3.7792 8 6 1.6006 0.3583 4.8831 9 8 1.0828 1.4497 4.7678 10 7 1.8196 -0.1576 6.1089 11 6 2.4787 -1.4613 6.2655 12 6 1.6012 -2.3615 7.1333 13 6 1.2925 -1.6503 8.4529 14 6 0.4524 -2.5493 9.3229 15 1 -0.5286 -2.2292 9.6418 16 6 0.9360 -3.7805 9.7117 17 7 2.1308 -4.1702 9.3238 18 14 -0.1051 -4.8946 10.7907 19 1 -1.3764 -5.2129 10.0924 20 1 0.6369 -6.1512 11.0661 21 1 -0.4032 -4.2054 12.0718 22 6 0.5278 -0.3552 8.1695 23 6 1.3982 0.5702 7.3136 24 6 2.0323 -0.7103 -1.2305 25 6 2.8270 -0.0385 -2.1404 26 6 3.2882 -0.6903 -3.2689 27 6 2.9552 -2.0140 -3.4872 28 6 2.1613 -2.6862 -2.5767 29 6 1.6992 -2.0341 -1.4487 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6053 -1.7198 1.2950 34 1 3.1262 -0.7996 1.2055 35 1 1.1488 0.8593 2.3518 36 1 2.6162 -1.9212 5.2868 37 1 3.4472 -1.3257 6.7470 38 1 2.1253 -3.2952 7.3373 39 1 0.6701 -2.5736 6.6079 40 1 2.2253 -1.4164 8.9661 41 1 2.4712 -5.0362 9.5976 42 1 0.2879 0.1390 9.1110 43 1 -0.3935 -0.5857 7.6345 44 1 2.2768 0.8749 7.8824 45 1 0.8252 1.4518 7.0262 46 1 3.0875 0.9956 -1.9697 47 1 3.9094 -0.1654 -3.9795 48 1 3.3117 -2.5218 -4.3711 49 1 1.9008 -3.7203 -2.7474 50 1 1.0787 -2.5592 -0.7377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324990547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:13 Heat of formation + Delta-G solvation = -41.221060 kcal Electronic energy + Delta-G solvation = -29691.693968 eV Core-core repulsion = 25683.797098 eV Total energy + Delta-G solvation = -4007.896870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.74414 -39.85664 -38.50640 -37.04358 -36.37422 -33.75775 -33.16982 -31.24108 -31.20198 -30.04787 -29.73292 -27.48191 -26.33995 -24.49589 -23.44361 -22.81410 -22.38844 -21.83362 -20.68338 -20.14903 -18.88144 -17.44601 -17.13138 -16.73761 -16.34880 -16.02142 -15.71608 -15.43513 -15.27061 -14.76706 -14.56539 -14.51193 -14.04563 -13.83198 -13.73081 -13.55503 -13.32040 -13.00207 -12.88856 -12.86311 -12.65789 -12.40535 -12.28491 -11.77342 -11.72340 -11.61341 -11.39473 -11.19296 -11.06939 -10.92470 -10.81671 -10.59798 -10.34529 -10.05481 -9.69422 -9.34107 -9.23666 -9.23005 -9.16170 -9.05386 -8.49570 -8.29736 -8.07313 -5.98944 -4.05617 1.00139 1.08066 1.62960 2.51366 3.31666 3.36588 3.39034 3.43027 3.44932 3.76298 4.29574 4.33542 4.43338 4.54833 4.63321 4.68355 4.73755 4.81657 4.97244 5.15059 5.20594 5.30492 5.35941 5.43062 5.50919 5.63596 5.67185 5.69416 5.73591 5.84086 5.85997 5.90822 6.06540 6.12217 6.15561 6.20350 6.26846 6.28776 6.48396 6.63215 6.66866 6.75363 6.82892 6.99464 7.12134 7.18384 7.32812 7.68212 7.80937 7.92342 7.98418 8.10022 8.26612 8.43795 8.97359 9.59023 11.06428 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.002122 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.224832 B =13190.239144 C =14216.657281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 H 0.088 0.912 4 C 0.125 3.875 5 N -0.703 5.703 6 C 0.511 3.489 7 O -0.501 6.501 8 C 0.499 3.501 9 O -0.547 6.547 10 N -0.558 5.558 11 C 0.044 3.956 12 C -0.121 4.121 13 C 0.046 3.954 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.122 4.122 23 C 0.106 3.894 24 C -0.075 4.075 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.118 4.118 29 C -0.111 4.111 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.142 0.858 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.035 0.965 40 H 0.027 0.973 41 H 0.261 0.739 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 7.829 -24.451 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 H 0.106 0.894 4 C 0.002 3.998 5 N -0.357 5.357 6 C 0.293 3.707 7 O -0.377 6.377 8 C 0.281 3.719 9 O -0.427 6.427 10 N -0.289 5.289 11 C -0.076 4.076 12 C -0.159 4.159 13 C 0.027 3.973 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.160 4.160 23 C -0.016 4.016 24 C -0.076 4.076 25 C -0.132 4.132 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.136 4.136 29 C -0.129 4.129 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.158 0.842 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.492 7.481 -24.376 25.542 hybrid contribution -0.720 -0.382 0.665 1.052 sum 0.773 7.099 -23.711 24.763 Atomic orbital electron populations 1.21905 0.93390 1.02846 1.02385 1.20374 0.96882 0.99658 0.91328 0.89409 1.21524 1.00733 0.95428 0.82156 1.45782 1.57003 1.28062 1.04897 1.20418 0.80090 0.85302 0.84868 1.90388 1.39115 1.23896 1.84290 1.19827 0.81089 0.86263 0.84730 1.90689 1.44762 1.20870 1.86407 1.48262 1.54815 1.21449 1.04378 1.23449 0.95752 0.81808 1.06606 1.21904 0.97924 1.00576 0.95493 1.18686 0.95470 0.90152 0.92986 1.21150 1.02292 1.01381 1.30330 0.92806 1.24965 0.95001 0.97897 0.96132 1.69835 1.16789 1.20890 1.45366 0.86679 0.80396 0.79996 0.81029 1.20367 1.21312 1.20348 1.22010 0.98351 0.97920 0.97748 1.21896 0.99272 0.95501 0.84905 1.19639 0.97929 0.94304 0.95681 1.21081 0.97730 0.99950 0.94417 1.21143 1.00049 0.94989 0.97604 1.21179 0.98600 0.94886 0.99457 1.21179 0.97868 1.00001 0.94511 1.21078 0.99956 0.94199 0.97678 0.91996 0.91942 0.91823 0.90565 0.90683 0.75207 0.84191 0.92254 0.87687 0.94623 0.95468 0.92905 0.91885 0.92909 0.91534 0.90132 0.86005 0.86088 0.86177 0.85963 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.88 37.16 0.33 -0.70 16 2 C -0.06 -0.47 2.60 -91.77 -0.24 -0.71 16 3 H 0.09 0.57 7.88 -51.93 -0.41 0.16 16 4 C 0.12 1.21 4.80 -4.04 -0.02 1.19 16 5 N -0.70 -8.11 5.27 -60.73 -0.32 -8.43 16 6 C 0.51 7.92 7.80 -11.59 -0.09 7.83 16 7 O -0.50 -8.77 13.02 5.49 0.07 -8.70 16 8 C 0.50 8.77 7.76 -11.58 -0.09 8.68 16 9 O -0.55 -10.00 15.91 5.50 0.09 -9.92 16 10 N -0.56 -10.54 2.98 -173.54 -0.52 -11.05 16 11 C 0.04 0.88 6.20 -3.94 -0.02 0.86 16 12 C -0.12 -2.83 5.14 -26.83 -0.14 -2.97 16 13 C 0.05 1.11 2.07 -91.73 -0.19 0.92 16 14 C -0.51 -13.91 8.56 -34.44 -0.29 -14.21 16 15 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -25.03 11.31 55.43 0.63 -24.41 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 23 C 0.11 1.94 6.43 -3.72 -0.02 1.92 16 24 C -0.07 -0.59 4.78 -104.62 -0.50 -1.09 16 25 C -0.11 -0.84 9.67 -39.58 -0.38 -1.23 16 26 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 27 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 28 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 29 C -0.11 -0.89 8.76 -39.58 -0.35 -1.24 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.45 7.39 -51.93 -0.38 0.06 16 32 H 0.06 0.45 7.18 -51.93 -0.37 0.08 16 33 H 0.08 0.78 7.57 -51.93 -0.39 0.39 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.41 4.19 7.15 -40.82 -0.29 3.89 16 36 H 0.14 2.80 3.79 -56.97 -0.22 2.58 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.11 2.74 6.03 -51.93 -0.31 2.43 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 45 H 0.08 1.41 7.01 -51.92 -0.36 1.04 16 46 H 0.12 0.72 7.95 -52.49 -0.42 0.30 16 47 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 48 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 49 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 50 H 0.12 0.90 7.16 -52.49 -0.38 0.53 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -30.45 398.01 -10.24 -40.69 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.73 Total: 5.27 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -3.44 Total: -5.60 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.21 Total: -43.89 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.16 Total: -18.61 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.45 -10.24 -40.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324990547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.530 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds