Wall clock time and date at job start Wed Apr 1 2020 03:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47203 * 2 1 4 4 C 1.52999 * 109.47151 * 120.00099 * 2 1 3 5 5 N 1.46500 * 109.47140 * 295.00202 * 4 2 1 6 6 C 1.34777 * 119.99755 * 179.97438 * 5 4 2 7 7 O 1.21352 * 119.99975 * 0.02562 * 6 5 4 8 8 C 1.49448 * 119.99824 * 179.97438 * 6 5 4 9 9 O 1.21347 * 120.00321 * 353.07333 * 8 6 5 10 10 N 1.34785 * 119.99887 * 173.07294 * 8 6 5 11 11 C 1.46920 * 120.63059 * 1.67669 * 10 8 6 12 12 C 1.52757 * 109.01034 * 233.58659 * 11 10 8 13 13 C 1.53049 * 109.38130 * 305.58634 * 12 11 10 14 14 C 1.50695 * 109.44729 * 181.25360 * 13 12 11 15 15 H 1.08007 * 119.99812 * 239.93873 * 14 13 12 16 16 C 1.37872 * 120.00328 * 59.93954 * 14 13 12 17 17 N 1.31516 * 120.00161 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99997 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47254 * 60.00500 * 18 16 14 20 20 H 1.48504 * 109.47014 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47446 * 300.00156 * 18 16 14 22 22 C 1.53043 * 109.53337 * 61.23956 * 13 12 11 23 23 C 1.46923 * 120.62993 * 181.95886 * 10 8 6 24 24 C 1.50702 * 109.47179 * 240.00464 * 2 1 3 25 25 C 1.38233 * 120.00097 * 119.99792 * 24 2 1 26 26 C 1.38239 * 119.99574 * 179.97438 * 25 24 2 27 27 C 1.38227 * 120.00490 * 359.97438 * 26 25 24 28 28 C 1.38243 * 119.99833 * 359.97438 * 27 26 25 29 29 C 1.38235 * 120.00055 * 0.07640 * 28 27 26 30 30 H 1.08998 * 109.47450 * 59.99881 * 1 2 3 31 31 H 1.08997 * 109.47660 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47191 * 300.00056 * 1 2 3 33 33 H 1.09002 * 109.46716 * 55.00156 * 4 2 1 34 34 H 1.08995 * 109.47160 * 174.99553 * 4 2 1 35 35 H 0.96993 * 120.00154 * 359.97438 * 5 4 2 36 36 H 1.09007 * 109.58575 * 353.41797 * 11 10 8 37 37 H 1.09004 * 109.58998 * 113.84079 * 11 10 8 38 38 H 1.08999 * 109.56733 * 185.55523 * 12 11 10 39 39 H 1.08997 * 109.36277 * 65.49595 * 12 11 10 40 40 H 1.09002 * 109.45639 * 301.22282 * 13 12 11 41 41 H 0.96998 * 120.00702 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.49385 * 178.68606 * 22 13 12 43 43 H 1.08998 * 109.52713 * 58.60361 * 22 13 12 44 44 H 1.09009 * 109.58394 * 246.15774 * 23 10 8 45 45 H 1.09008 * 109.58647 * 6.43264 * 23 10 8 46 46 H 1.07996 * 119.99996 * 359.97438 * 25 24 2 47 47 H 1.08001 * 119.99180 * 180.02562 * 26 25 24 48 48 H 1.07998 * 120.00157 * 179.71739 * 27 26 25 49 49 H 1.07999 * 119.99896 * 179.97438 * 28 27 26 50 50 H 1.07997 * 119.99876 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0353 2.4424 6 6 1.9955 -0.4137 3.6659 7 8 2.6259 -1.4445 3.7792 8 6 1.6006 0.3583 4.8831 9 8 1.0828 1.4497 4.7678 10 7 1.8196 -0.1576 6.1089 11 6 2.4787 -1.4613 6.2655 12 6 1.6012 -2.3615 7.1333 13 6 1.2925 -1.6503 8.4529 14 6 0.4524 -2.5493 9.3229 15 1 -0.5286 -2.2292 9.6418 16 6 0.9360 -3.7805 9.7117 17 7 2.1308 -4.1702 9.3238 18 14 -0.1051 -4.8946 10.7907 19 1 -1.3764 -5.2129 10.0924 20 1 0.6369 -6.1512 11.0661 21 1 -0.4032 -4.2054 12.0718 22 6 0.5278 -0.3552 8.1695 23 6 1.3982 0.5702 7.3136 24 6 2.0323 -0.7103 -1.2305 25 6 2.8270 -0.0385 -2.1404 26 6 3.2882 -0.6903 -3.2689 27 6 2.9552 -2.0140 -3.4872 28 6 2.1613 -2.6862 -2.5767 29 6 1.6992 -2.0341 -1.4487 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6053 -1.7198 1.2950 34 1 3.1262 -0.7996 1.2055 35 1 1.1488 0.8593 2.3518 36 1 2.6162 -1.9212 5.2868 37 1 3.4472 -1.3257 6.7470 38 1 2.1253 -3.2952 7.3373 39 1 0.6701 -2.5736 6.6079 40 1 2.2253 -1.4164 8.9661 41 1 2.4712 -5.0362 9.5976 42 1 0.2879 0.1390 9.1110 43 1 -0.3935 -0.5857 7.6345 44 1 2.2768 0.8749 7.8824 45 1 0.8252 1.4518 7.0262 46 1 3.0875 0.9956 -1.9697 47 1 3.9094 -0.1654 -3.9795 48 1 3.3117 -2.5218 -4.3711 49 1 1.9008 -3.7203 -2.7474 50 1 1.0787 -2.5592 -0.7377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324990547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:12 Heat of formation + Delta-G solvation = -57.703482 kcal Electronic energy + Delta-G solvation = -29692.408699 eV Core-core repulsion = 25683.797098 eV Total energy + Delta-G solvation = -4008.611601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.05153 -40.53327 -39.77584 -38.60560 -37.29163 -35.39249 -34.27888 -33.01613 -31.76736 -31.76159 -30.33831 -28.66628 -27.82595 -25.84070 -24.38053 -24.06770 -23.58908 -23.03405 -21.78119 -21.17634 -20.39390 -18.75960 -18.38673 -18.10861 -17.67223 -17.17963 -16.87068 -16.51173 -16.37011 -15.94634 -15.88552 -15.49510 -15.36394 -14.79930 -14.76412 -14.63985 -14.52808 -14.40669 -14.15196 -13.95262 -13.92007 -13.48535 -13.38181 -13.19214 -12.95176 -12.80040 -12.53617 -12.40195 -12.30209 -12.19746 -12.13900 -11.92950 -11.74900 -11.63654 -11.49439 -11.06850 -11.00801 -10.45230 -10.37540 -9.95780 -9.78146 -9.69775 -9.60668 -8.07090 -6.21263 0.30445 0.44590 0.53800 1.28846 1.42436 1.42980 1.50669 2.09395 2.43942 2.47128 2.90166 3.19066 3.24343 3.67511 3.75785 3.97567 4.11714 4.16349 4.19887 4.27450 4.32050 4.33226 4.38800 4.50061 4.56053 4.61088 4.63636 4.67807 4.73979 4.80023 4.83022 4.91003 4.94422 5.08551 5.13869 5.16520 5.19547 5.20755 5.30152 5.35632 5.39227 5.51883 5.61915 5.62814 5.67295 5.72850 5.95776 6.00419 6.11253 6.15149 6.28559 6.38374 6.69231 6.88591 6.91987 7.46398 8.96358 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.002122 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.224832 B =13190.239144 C =14216.657281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 H 0.102 0.898 4 C 0.125 3.875 5 N -0.681 5.681 6 C 0.511 3.489 7 O -0.524 6.524 8 C 0.501 3.499 9 O -0.550 6.550 10 N -0.568 5.568 11 C 0.059 3.941 12 C -0.110 4.110 13 C 0.042 3.958 14 C -0.534 4.534 15 H 0.051 0.949 16 C 0.013 3.987 17 N -0.914 5.914 18 Si 0.952 3.048 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.113 4.113 23 C 0.111 3.889 24 C -0.085 4.085 25 C -0.122 4.122 26 C -0.127 4.127 27 C -0.131 4.131 28 C -0.130 4.130 29 C -0.126 4.126 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.421 0.579 36 H 0.149 0.851 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.023 0.977 40 H 0.002 0.998 41 H 0.261 0.739 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.137 0.863 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.133 0.867 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 8.904 -25.909 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 H 0.120 0.880 4 C 0.003 3.997 5 N -0.334 5.334 6 C 0.293 3.707 7 O -0.403 6.403 8 C 0.284 3.716 9 O -0.430 6.430 10 N -0.299 5.299 11 C -0.061 4.061 12 C -0.149 4.149 13 C 0.023 3.977 14 C -0.573 4.573 15 H 0.069 0.931 16 C -0.186 4.186 17 N -0.553 5.553 18 Si 0.778 3.222 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.151 4.151 23 C -0.011 4.011 24 C -0.085 4.085 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.149 4.149 28 C -0.148 4.148 29 C -0.144 4.144 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.259 0.741 36 H 0.165 0.835 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.020 0.980 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.155 0.845 47 H 0.157 0.843 48 H 0.155 0.845 49 H 0.151 0.849 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.041 8.599 -25.870 27.282 hybrid contribution -0.593 -0.688 1.030 1.373 sum 0.448 7.912 -24.840 26.073 Atomic orbital electron populations 1.21901 0.93039 1.02726 1.02765 1.20294 0.97046 0.99932 0.89833 0.88007 1.21655 1.00555 0.95378 0.82153 1.45718 1.55450 1.28029 1.04175 1.20084 0.80359 0.84954 0.85300 1.90355 1.40633 1.24854 1.84452 1.20146 0.80364 0.86236 0.84899 1.90682 1.44723 1.21066 1.86549 1.48234 1.55407 1.21060 1.05194 1.23205 0.94744 0.82037 1.06148 1.21674 0.97508 1.00072 0.95649 1.18661 0.94450 0.91773 0.92776 1.21525 1.02547 1.02213 1.30966 0.93052 1.25715 0.96119 0.99309 0.97414 1.69972 1.18054 1.21156 1.46164 0.85711 0.78871 0.78180 0.79466 1.19944 1.20991 1.19686 1.21853 0.97886 0.96636 0.98718 1.21854 0.99455 0.95127 0.84649 1.19708 0.98437 0.94370 0.96006 1.21334 0.97461 1.00779 0.94435 1.21446 1.00051 0.95148 0.97882 1.21471 0.98291 0.95188 0.99933 1.21419 0.98080 1.00747 0.94581 1.21225 1.00428 0.94615 0.98116 0.91167 0.92374 0.91841 0.91044 0.91074 0.74096 0.83494 0.92538 0.90637 0.95828 0.97992 0.92980 0.90947 0.93588 0.90504 0.88631 0.84521 0.84261 0.84500 0.84899 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.88 71.98 0.64 -1.16 16 2 C -0.05 -0.67 2.60 -11.54 -0.03 -0.70 16 3 H 0.10 1.05 7.88 -2.39 -0.02 1.03 16 4 C 0.13 2.25 4.80 86.38 0.41 2.67 16 5 N -0.68 -14.58 5.27 -464.41 -2.45 -17.03 16 6 C 0.51 15.28 7.80 87.27 0.68 15.96 16 7 O -0.52 -18.09 13.02 -3.25 -0.04 -18.13 16 8 C 0.50 16.92 7.76 87.27 0.68 17.60 16 9 O -0.55 -18.98 15.91 -3.24 -0.05 -19.03 16 10 N -0.57 -21.01 2.98 -821.31 -2.45 -23.45 16 11 C 0.06 2.40 6.20 86.22 0.53 2.93 16 12 C -0.11 -5.31 5.14 30.53 0.16 -5.16 16 13 C 0.04 2.09 2.07 -11.51 -0.02 2.06 16 14 C -0.53 -29.39 8.56 25.60 0.22 -29.17 16 15 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 16 C 0.01 0.73 5.30 84.65 0.45 1.18 16 17 N -0.91 -52.52 11.31 21.45 0.24 -52.28 16 18 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 C -0.11 -4.62 5.30 30.67 0.16 -4.46 16 23 C 0.11 3.94 6.43 86.36 0.56 4.49 16 24 C -0.08 -1.21 4.78 -19.86 -0.09 -1.31 16 25 C -0.12 -1.59 9.67 22.27 0.22 -1.37 16 26 C -0.13 -1.56 10.05 22.27 0.22 -1.34 16 27 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 28 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 29 C -0.13 -1.92 8.76 22.27 0.20 -1.73 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.76 7.39 -2.39 -0.02 0.75 16 32 H 0.06 0.77 7.18 -2.39 -0.02 0.76 16 33 H 0.07 1.41 7.57 -2.39 -0.02 1.39 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.42 7.61 7.15 -92.71 -0.66 6.95 16 36 H 0.15 5.90 3.79 -82.24 -0.31 5.59 16 37 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.08 4.10 6.03 -2.39 -0.01 4.08 16 39 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 44 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 45 H 0.10 3.14 7.01 -2.38 -0.02 3.12 16 46 H 0.14 1.28 7.95 -2.91 -0.02 1.26 16 47 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 48 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 49 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 50 H 0.12 1.78 7.16 -2.91 -0.02 1.76 16 Total: -1.00 -65.05 398.01 2.68 -62.37 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.02 Total: 24.38 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.42 Total: -2.55 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -4.65 Total: -92.75 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.09 Total: -37.17 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -65.05 2.68 -62.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324990547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.668 kcal (2) G-P(sol) polarization free energy of solvation -65.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds