Wall clock time and date at job start Wed Apr 1 2020 03:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47410 * 2 1 4 4 C 1.46505 * 119.99662 * 93.90490 * 3 2 1 5 5 C 1.53005 * 109.46741 * 90.00701 * 4 3 2 6 6 C 1.53775 * 113.61585 * 85.86425 * 5 4 3 7 7 C 1.54043 * 86.98839 * 140.02052 * 6 5 4 8 8 C 1.53777 * 113.61342 * 183.46994 * 5 4 3 9 9 C 1.34770 * 120.00293 * 273.91331 * 3 2 1 10 10 O 1.21350 * 120.00386 * 185.42075 * 9 3 2 11 11 C 1.49450 * 120.00059 * 5.41750 * 9 3 2 12 12 O 1.21351 * 120.00075 * 5.18165 * 11 9 3 13 13 N 1.34777 * 120.00446 * 185.17857 * 11 9 3 14 14 C 1.46493 * 120.00401 * 180.02562 * 13 11 9 15 15 C 1.50703 * 109.47251 * 179.97438 * 14 13 11 16 16 C 1.38633 * 119.74979 * 269.72679 * 15 14 13 17 17 C 1.37618 * 120.25019 * 179.71687 * 16 15 14 18 18 C 1.40715 * 119.74154 * 0.57560 * 17 16 15 19 19 C 1.41402 * 120.24716 * 179.67408 * 18 17 16 20 20 H 1.08004 * 120.00092 * 154.44224 * 19 18 17 21 21 C 1.39945 * 119.99876 * 334.45737 * 19 18 17 22 22 N 1.30824 * 119.99926 * 342.83915 * 21 19 18 23 23 Si 1.86798 * 120.00131 * 162.84124 * 21 19 18 24 24 H 1.48502 * 109.46946 * 94.97821 * 23 21 19 25 25 H 1.48504 * 109.47116 * 214.97881 * 23 21 19 26 26 H 1.48501 * 109.47138 * 334.98064 * 23 21 19 27 27 C 1.40714 * 119.51476 * 359.70239 * 18 17 16 28 28 C 1.37628 * 119.74461 * 359.97438 * 27 18 17 29 29 H 1.09006 * 109.47734 * 59.99588 * 1 2 3 30 30 H 1.09009 * 109.47570 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47330 * 299.99748 * 1 2 3 32 32 H 1.09004 * 109.46848 * 240.00282 * 2 1 3 33 33 H 1.09000 * 109.47440 * 120.00725 * 2 1 3 34 34 H 1.08996 * 109.47101 * 330.00643 * 4 3 2 35 35 H 1.08997 * 109.47051 * 209.99951 * 4 3 2 36 36 H 1.09003 * 112.84802 * 314.66440 * 5 4 3 37 37 H 1.09007 * 113.61193 * 254.61630 * 6 5 4 38 38 H 1.09000 * 113.61637 * 25.50783 * 6 5 4 39 39 H 1.08999 * 113.61800 * 220.02532 * 7 6 5 40 40 H 1.08998 * 113.61983 * 89.11067 * 7 6 5 41 41 H 1.09005 * 113.61552 * 334.48554 * 8 5 4 42 42 H 1.08997 * 113.61361 * 105.29983 * 8 5 4 43 43 H 0.97004 * 119.99627 * 0.02562 * 13 11 9 44 44 H 1.09000 * 109.47433 * 300.00074 * 14 13 11 45 45 H 1.09000 * 109.47452 * 60.00193 * 14 13 11 46 46 H 1.07997 * 119.87584 * 359.97438 * 16 15 14 47 47 H 1.07995 * 120.13101 * 180.27384 * 17 16 15 48 48 H 0.96994 * 120.00186 * 180.02562 * 22 21 19 49 49 H 1.08003 * 120.13490 * 179.97438 * 27 18 17 50 50 H 1.07994 * 119.87488 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3440 2.0429 1.2659 5 6 3.8143 1.7936 1.6081 6 6 4.7773 2.8021 0.9599 7 6 5.5559 2.7895 2.2890 8 6 4.2381 2.3774 2.9662 9 6 2.1679 2.0431 -1.1644 10 8 2.6643 3.1504 -1.1735 11 6 1.7224 1.4134 -2.4445 12 8 1.1413 0.3482 -2.4267 13 7 1.9660 2.0285 -3.6187 14 6 1.5289 1.4116 -4.8734 15 6 1.9197 2.2947 -6.0303 16 6 1.0423 3.2701 -6.4783 17 6 1.3911 4.0860 -7.5302 18 6 2.6387 3.9192 -8.1592 19 6 3.0051 4.7471 -9.2454 20 1 4.0484 4.9235 -9.4621 21 6 2.0159 5.3382 -10.0395 22 7 0.7908 4.8802 -10.0070 23 14 2.4446 6.7810 -11.1457 24 1 2.7460 6.2844 -12.5124 25 1 1.2955 7.7199 -11.2024 26 1 3.6333 7.4856 -10.6019 27 6 3.5189 2.9221 -7.6998 28 6 3.1519 2.1220 -6.6419 29 1 -0.3635 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.7131 1.6411 2.0587 35 1 2.1698 3.1147 1.1709 36 1 4.1111 0.7542 1.4679 37 1 5.3380 2.3924 0.1197 38 1 4.3156 3.7632 0.7334 39 1 5.9149 3.7724 2.5942 40 1 6.3289 2.0223 2.3350 41 1 3.6293 3.2226 3.2873 42 1 4.3625 1.6252 3.7451 43 1 2.4308 2.8799 -3.6329 44 1 2.0035 0.4365 -4.9836 45 1 0.4459 1.2891 -4.8601 46 1 0.0832 3.3928 -5.9973 47 1 0.7079 4.8481 -7.8748 48 1 0.1053 5.2897 -10.5576 49 1 4.4788 2.7851 -8.1755 50 1 3.8259 1.3563 -6.2873 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326939419.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:53 Heat of formation + Delta-G solvation = -46.992667 kcal Electronic energy + Delta-G solvation = -29515.366898 eV Core-core repulsion = 25507.219753 eV Total energy + Delta-G solvation = -4008.147145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.93522 -40.19685 -39.49883 -38.96019 -37.33929 -36.17214 -35.02641 -32.14193 -31.85665 -31.20393 -29.70190 -28.72355 -26.49052 -26.20310 -24.88750 -24.37374 -22.97537 -22.86108 -21.85280 -20.75983 -20.24295 -19.25718 -18.81963 -18.09210 -17.22721 -17.12523 -16.90765 -16.39236 -16.21459 -16.08447 -15.77941 -15.51757 -15.45254 -15.06890 -14.72170 -14.51279 -14.26528 -14.02128 -13.85513 -13.67037 -13.57191 -13.34997 -13.29960 -13.10110 -12.96385 -12.79614 -12.75004 -12.42638 -12.39073 -12.21279 -12.18418 -11.93168 -11.59595 -11.51464 -11.31871 -11.29850 -11.08686 -11.05699 -10.44317 -10.14430 -9.72998 -9.41498 -9.29801 -8.68352 -6.39010 0.40921 0.77369 1.11582 1.35313 1.38443 1.51180 1.56999 2.17516 2.18752 2.49557 2.76322 3.38271 3.68460 3.72327 3.79535 3.81954 4.00072 4.11561 4.15188 4.28073 4.38363 4.39396 4.45865 4.48881 4.62754 4.63275 4.68522 4.73019 4.85268 4.87551 4.94121 4.95935 5.02176 5.06523 5.10220 5.13051 5.13714 5.22034 5.32603 5.35919 5.40550 5.45578 5.51116 5.63334 5.66548 5.86474 6.01042 6.06708 6.16282 6.31808 6.34187 6.65688 6.73150 6.89811 6.98129 7.00127 8.28690 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.002091 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.591363 B =13388.826614 C =14433.807097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.576 5.576 4 C 0.121 3.879 5 C -0.124 4.124 6 C -0.138 4.138 7 C -0.142 4.142 8 C -0.119 4.119 9 C 0.503 3.497 10 O -0.541 6.541 11 C 0.496 3.504 12 O -0.529 6.529 13 N -0.687 5.687 14 C 0.194 3.806 15 C -0.231 4.231 16 C -0.082 4.082 17 C -0.192 4.192 18 C 0.086 3.914 19 C -0.496 4.496 20 H 0.077 0.923 21 C 0.035 3.965 22 N -0.821 5.821 23 Si 0.982 3.018 24 H -0.262 1.262 25 H -0.266 1.266 26 H -0.259 1.259 27 C -0.244 4.244 28 C -0.067 4.067 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.410 0.590 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.289 0.711 49 H 0.099 0.901 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 -7.185 23.539 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.020 4.020 3 N -0.308 5.308 4 C 0.000 4.000 5 C -0.143 4.143 6 C -0.176 4.176 7 C -0.180 4.180 8 C -0.157 4.157 9 C 0.285 3.715 10 O -0.418 6.418 11 C 0.277 3.723 12 O -0.408 6.408 13 N -0.339 5.339 14 C 0.072 3.928 15 C -0.233 4.233 16 C -0.101 4.101 17 C -0.211 4.211 18 C 0.084 3.916 19 C -0.525 4.525 20 H 0.095 0.905 21 C -0.181 4.181 22 N -0.447 5.447 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.190 1.190 26 H -0.183 1.183 27 C -0.263 4.263 28 C -0.086 4.086 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.246 0.754 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.123 0.877 47 H 0.118 0.882 48 H 0.100 0.900 49 H 0.117 0.883 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.604 -7.364 23.440 24.622 hybrid contribution 0.198 1.124 -1.230 1.678 sum 1.802 -6.240 22.210 23.140 Atomic orbital electron populations 1.22048 0.95211 1.02881 1.01195 1.22015 0.95332 0.80123 1.04530 1.47987 1.62387 1.15279 1.05176 1.21823 0.96099 0.98258 0.83865 1.22963 0.93891 0.99693 0.97803 1.22952 0.98357 0.99484 0.96810 1.22891 0.97208 1.02031 0.95837 1.22817 0.96425 1.01167 0.95244 1.20205 0.79899 0.85721 0.85685 1.90746 1.43485 1.20656 1.86947 1.20313 0.80984 0.85535 0.85479 1.90686 1.41383 1.21538 1.87167 1.46291 1.57073 1.25202 1.05296 1.19922 0.99073 0.94549 0.79257 1.19199 0.97094 1.04225 1.02756 1.20776 0.97962 0.95282 0.96069 1.21254 0.99103 1.02555 0.98227 1.18024 0.92047 0.90176 0.91359 1.19895 0.94660 1.26505 1.11482 0.90491 1.26781 0.94051 0.99052 0.98189 1.69864 1.03672 1.36783 1.34332 0.85199 0.79297 0.77292 0.78000 1.18648 1.19030 1.18278 1.21185 1.01470 1.00538 1.03143 1.20713 0.95278 0.97745 0.94840 0.94269 0.90500 0.92129 0.89644 0.87810 0.87102 0.90983 0.88692 0.93975 0.91212 0.91299 0.89777 0.89395 0.89680 0.75369 0.90727 0.91427 0.87672 0.88239 0.90001 0.88290 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.67 71.98 0.70 -1.98 16 2 C 0.10 1.72 5.68 86.38 0.49 2.21 16 3 N -0.58 -11.78 2.48 -823.40 -2.04 -13.82 16 4 C 0.12 1.91 5.19 86.38 0.45 2.36 16 5 C -0.12 -1.84 3.96 -10.27 -0.04 -1.88 16 6 C -0.14 -2.73 6.79 31.21 0.21 -2.52 16 7 C -0.14 -2.02 8.09 31.21 0.25 -1.76 16 8 C -0.12 -1.31 7.64 31.12 0.24 -1.07 16 9 C 0.50 13.84 7.70 87.27 0.67 14.52 16 10 O -0.54 -17.29 14.88 -3.25 -0.05 -17.34 16 11 C 0.50 14.74 7.65 87.27 0.67 15.41 16 12 O -0.53 -16.11 11.42 -3.25 -0.04 -16.14 16 13 N -0.69 -21.63 5.54 -468.15 -2.59 -24.23 16 14 C 0.19 6.44 5.79 85.64 0.50 6.93 16 15 C -0.23 -9.29 5.27 -19.67 -0.10 -9.40 16 16 C -0.08 -3.68 9.67 22.22 0.21 -3.46 16 17 C -0.19 -9.95 8.69 22.73 0.20 -9.75 16 18 C 0.09 4.62 5.56 -21.29 -0.12 4.50 16 19 C -0.50 -26.56 9.05 23.46 0.21 -26.34 16 20 H 0.08 3.97 7.90 -2.91 -0.02 3.95 16 21 C 0.03 1.74 5.15 85.26 0.44 2.18 16 22 N -0.82 -42.61 10.99 21.83 0.24 -42.37 16 23 Si 0.98 37.89 29.59 68.60 2.03 39.92 16 24 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 25 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 26 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 27 C -0.24 -11.70 9.80 22.73 0.22 -11.48 16 28 C -0.07 -2.80 9.67 22.22 0.21 -2.59 16 29 H 0.04 0.92 6.48 -2.38 -0.02 0.90 16 30 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 1.81 5.83 -2.38 -0.01 1.79 16 33 H 0.10 1.11 8.04 -2.39 -0.02 1.09 16 34 H 0.11 1.10 8.07 -2.39 -0.02 1.09 16 35 H 0.07 1.38 7.24 -2.39 -0.02 1.37 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.07 1.64 7.55 -2.39 -0.02 1.62 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 0.89 8.10 -2.38 -0.02 0.87 16 42 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.41 13.40 7.95 -92.71 -0.74 12.67 16 44 H 0.07 2.36 8.08 -2.39 -0.02 2.34 16 45 H 0.07 2.23 8.08 -2.39 -0.02 2.21 16 46 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 47 H 0.10 5.44 6.22 -2.91 -0.02 5.42 16 48 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 49 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 50 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -60.61 406.23 3.17 -57.45 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: 0.21 Total: 40.67 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 5.41 Total: -24.14 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -4.39 Total: -80.41 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.09 Total: -33.48 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -60.61 3.17 -57.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326939419.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.454 kcal (2) G-P(sol) polarization free energy of solvation -60.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds