Wall clock time and date at job start Wed Apr 1 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47391 * 2 1 4 4 O 1.42901 * 109.47262 * 119.99834 * 2 1 3 5 5 C 1.42895 * 114.00313 * 270.00399 * 4 2 1 6 6 C 1.53003 * 109.47298 * 180.02562 * 5 4 2 7 7 C 1.53001 * 117.51964 * 116.28202 * 6 5 4 8 8 C 1.52999 * 60.00190 * 107.47982 * 7 6 5 9 9 C 1.50697 * 109.47298 * 239.99898 * 2 1 3 10 10 O 1.21279 * 120.00188 * 244.99603 * 9 2 1 11 11 N 1.34776 * 119.99891 * 65.00005 * 9 2 1 12 12 C 1.46495 * 120.00295 * 179.97438 * 11 9 2 13 13 C 1.50701 * 109.47296 * 179.97438 * 12 11 9 14 14 C 1.38253 * 120.01940 * 90.00378 * 13 12 11 15 15 C 1.38139 * 119.96319 * 180.02562 * 14 13 12 16 16 C 1.38451 * 120.10385 * 359.97438 * 15 14 13 17 17 C 1.38061 * 119.93421 * 0.02562 * 16 15 14 18 18 C 1.38155 * 120.02066 * 269.72788 * 13 12 11 19 19 C 1.50781 * 108.86331 * 180.02562 * 17 16 15 20 20 N 1.46637 * 107.69903 * 0.02562 * 19 17 16 21 21 C 1.36938 * 126.56225 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00108 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99664 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00559 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99604 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47026 * 90.00073 * 25 23 21 27 27 H 1.48499 * 109.47312 * 209.99746 * 25 23 21 28 28 H 1.48503 * 109.47340 * 330.00503 * 25 23 21 29 29 C 1.46638 * 106.87360 * 359.97438 * 20 19 17 30 30 H 1.09001 * 109.47741 * 60.00184 * 1 2 3 31 31 H 1.09000 * 109.47391 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47340 * 299.99514 * 1 2 3 33 33 H 1.08999 * 109.47440 * 59.99511 * 5 4 2 34 34 H 1.09005 * 109.46905 * 299.99670 * 5 4 2 35 35 H 1.09002 * 115.54973 * 330.57985 * 6 5 4 36 36 H 1.09001 * 117.49733 * 214.97413 * 7 6 5 37 37 H 1.08995 * 117.49577 * 359.97438 * 7 6 5 38 38 H 1.09004 * 117.50150 * 252.51496 * 8 7 6 39 39 H 1.09004 * 117.49681 * 107.48417 * 8 7 6 40 40 H 0.97003 * 119.99868 * 0.02562 * 11 9 2 41 41 H 1.08998 * 109.47717 * 300.00369 * 12 11 9 42 42 H 1.09007 * 109.46725 * 60.00185 * 12 11 9 43 43 H 1.08004 * 120.01815 * 359.97438 * 14 13 12 44 44 H 1.07997 * 119.94975 * 179.97438 * 15 14 13 45 45 H 1.07997 * 119.94510 * 359.97438 * 18 13 12 46 46 H 1.09001 * 109.80797 * 119.54956 * 19 17 16 47 47 H 1.08998 * 109.81172 * 240.45462 * 19 17 16 48 48 H 0.96997 * 120.00317 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.81158 * 240.44945 * 29 20 19 50 50 H 1.08998 * 109.80933 * 119.54998 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7090 -0.6406 3.4788 7 6 4.1068 -0.3215 4.0130 8 6 2.8699 0.0767 4.8207 9 6 2.0323 -0.7104 -1.2304 10 8 2.6530 -1.7466 -1.1214 11 7 1.7919 -0.1942 -2.4519 12 6 2.2807 -0.8844 -3.6481 13 6 1.8813 -0.1065 -4.8755 14 6 2.7205 0.8703 -5.3787 15 6 2.3530 1.5830 -6.5035 16 6 1.1457 1.3204 -7.1283 17 6 0.3077 0.3451 -6.6258 18 6 0.6791 -0.3729 -5.5018 19 6 -0.9249 0.2684 -7.4908 20 7 -0.7832 1.2640 -8.5580 21 6 -1.6819 1.5206 -9.5589 22 1 -2.6039 0.9608 -9.6133 23 6 -1.4079 2.5002 -10.5034 24 7 -0.2840 3.1821 -10.4374 25 14 -2.6335 2.8496 -11.8691 26 1 -3.5866 3.8973 -11.4228 27 1 -1.9086 3.3217 -13.0761 28 1 -3.3800 1.6076 -12.1941 29 6 0.5051 1.9324 -8.3483 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.2537 0.6547 2.5589 34 1 2.9319 0.9513 2.0450 35 1 2.3877 -1.6820 3.5002 36 1 4.7051 -1.1530 4.3857 37 1 4.6642 0.4749 3.5201 38 1 2.6134 1.1355 4.8593 39 1 2.6544 -0.4928 5.7248 40 1 1.2958 0.6348 -2.5391 41 1 3.3670 -0.9623 -3.6043 42 1 1.8464 -1.8832 -3.6941 43 1 3.6624 1.0765 -4.8921 44 1 3.0085 2.3462 -6.8961 45 1 0.0260 -1.1393 -5.1114 46 1 -1.0105 -0.7279 -7.9245 47 1 -1.8095 0.4897 -6.8937 48 1 -0.0927 3.8668 -11.0973 49 1 0.3462 2.9986 -8.1871 50 1 1.1456 1.7807 -9.2171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327682397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:08 Heat of formation + Delta-G solvation = -2.082657 kcal Electronic energy + Delta-G solvation = -28601.203734 eV Core-core repulsion = 24595.004033 eV Total energy + Delta-G solvation = -4006.199701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.29473 -39.60613 -38.53647 -36.94496 -36.30448 -34.57301 -32.50228 -31.91117 -30.98430 -29.69742 -27.52539 -27.51005 -26.08288 -24.95363 -23.66805 -22.81329 -22.05919 -21.25231 -20.54253 -20.45763 -20.08425 -17.64491 -17.49990 -17.05433 -16.20915 -16.08625 -15.59131 -15.46004 -15.17840 -14.82078 -14.60691 -14.40245 -14.33408 -14.15588 -13.94000 -13.43460 -13.23251 -13.05898 -13.01446 -12.72109 -12.37665 -12.02379 -11.98796 -11.91306 -11.87662 -11.70587 -11.58795 -11.42657 -11.11311 -10.90553 -10.87087 -10.73441 -10.51953 -10.26481 -10.18442 -10.14373 -9.83635 -9.69550 -9.22708 -8.98680 -8.46008 -8.06079 -6.89571 -5.85475 -3.18839 1.51780 1.70330 2.43878 2.65115 3.29573 3.34745 3.39641 3.41840 3.59353 4.08949 4.32799 4.37499 4.41516 4.45656 4.54551 4.59197 4.67759 4.72195 4.86034 4.94659 4.98886 5.17435 5.19788 5.21140 5.22569 5.27883 5.32795 5.39578 5.45806 5.47319 5.54115 5.64259 5.66431 5.73712 5.76894 5.81931 5.98478 6.07185 6.21958 6.45747 6.50006 6.51751 6.70747 6.73592 6.75171 7.01225 7.28570 7.29455 7.34973 7.48644 7.64957 8.04837 8.09228 9.07408 9.67304 10.34130 11.28650 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.001624 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.554195 B =17238.369194 C =17500.298259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.086 0.914 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.153 4.153 7 C -0.177 4.177 8 C -0.174 4.174 9 C 0.513 3.487 10 O -0.521 6.521 11 N -0.722 5.722 12 C 0.171 3.829 13 C -0.132 4.132 14 C -0.103 4.103 15 C -0.113 4.113 16 C -0.080 4.080 17 C -0.107 4.107 18 C -0.083 4.083 19 C 0.175 3.825 20 N -0.600 5.600 21 C -0.227 4.227 22 H 0.084 0.916 23 C -0.006 4.006 24 N -0.923 5.923 25 Si 0.918 3.082 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.205 3.795 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.403 0.597 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.037 0.963 47 H 0.036 0.964 48 H 0.255 0.745 49 H 0.065 0.935 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.128 -3.296 25.585 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.104 0.896 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.171 4.171 7 C -0.214 4.214 8 C -0.211 4.211 9 C 0.297 3.703 10 O -0.396 6.396 11 N -0.376 5.376 12 C 0.049 3.951 13 C -0.133 4.133 14 C -0.122 4.122 15 C -0.131 4.131 16 C -0.081 4.081 17 C -0.107 4.107 18 C -0.102 4.102 19 C 0.050 3.950 20 N -0.327 5.327 21 C -0.355 4.355 22 H 0.102 0.898 23 C -0.203 4.203 24 N -0.570 5.570 25 Si 0.748 3.252 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.205 1.205 29 C 0.081 3.919 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.237 0.763 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.592 -4.135 25.463 26.625 hybrid contribution -0.837 0.962 -0.819 1.515 sum 5.755 -3.173 24.645 25.506 Atomic orbital electron populations 1.22244 0.93311 1.04035 1.03325 1.21876 0.95229 0.96215 0.85638 0.89641 1.88043 1.86470 1.33958 1.18716 1.22125 0.99275 0.91947 0.85253 1.22105 1.00552 1.01135 0.93293 1.23075 0.90846 1.03636 1.03796 1.22986 1.02534 1.01094 0.94476 1.20357 0.80004 0.85675 0.84218 1.90728 1.39375 1.23080 1.86434 1.46103 1.58162 1.28111 1.05176 1.20105 0.99429 0.94908 0.80654 1.19456 0.96111 0.99855 0.97864 1.20825 0.99039 0.95890 0.96430 1.20504 0.96082 1.00590 0.95928 1.21554 0.93523 0.95478 0.97551 1.20731 0.97862 0.96551 0.95601 1.20310 0.95706 0.99317 0.94887 1.19708 0.92346 0.93947 0.89029 1.43952 1.19151 1.40311 1.29273 1.18986 0.98117 1.16296 1.02062 0.89834 1.24833 0.97745 0.98441 0.99267 1.69917 1.23787 1.26129 1.37174 0.86026 0.79899 0.78121 0.81157 1.21444 1.21528 1.20526 1.19745 0.86486 0.95686 0.90005 0.90651 0.90933 0.91173 0.92608 0.93020 0.86673 0.88510 0.88643 0.88650 0.88341 0.76286 0.90767 0.90744 0.86318 0.86105 0.86501 0.94564 0.94602 0.93446 0.91776 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.48 37.15 0.35 -0.87 16 2 C 0.07 0.65 3.13 -27.89 -0.09 0.56 16 3 H 0.09 0.56 7.79 -51.93 -0.40 0.16 16 4 O -0.35 -3.87 9.53 -55.09 -0.52 -4.39 16 5 C 0.09 0.70 6.03 37.16 0.22 0.92 16 6 C -0.15 -1.14 6.06 -90.61 -0.55 -1.69 16 7 C -0.18 -1.14 10.18 -26.73 -0.27 -1.42 16 8 C -0.17 -0.96 10.25 -26.73 -0.27 -1.23 16 9 C 0.51 6.09 7.18 -10.99 -0.08 6.01 16 10 O -0.52 -8.50 16.51 -14.30 -0.24 -8.74 16 11 N -0.72 -7.34 5.51 -61.47 -0.34 -7.68 16 12 C 0.17 1.97 5.80 -5.20 -0.03 1.94 16 13 C -0.13 -1.72 5.25 -104.65 -0.55 -2.27 16 14 C -0.10 -1.38 9.70 -39.61 -0.38 -1.76 16 15 C -0.11 -1.80 10.05 -39.54 -0.40 -2.19 16 16 C -0.08 -1.55 6.22 -104.57 -0.65 -2.20 16 17 C -0.11 -1.96 6.22 -104.57 -0.65 -2.61 16 18 C -0.08 -1.23 9.70 -39.54 -0.38 -1.61 16 19 C 0.18 3.67 7.25 -5.08 -0.04 3.63 16 20 N -0.60 -15.26 3.41 -175.67 -0.60 -15.86 16 21 C -0.23 -6.20 10.32 -15.06 -0.16 -6.35 16 22 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 24 N -0.92 -26.32 10.44 55.49 0.58 -25.74 16 25 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 C 0.21 4.93 5.39 -5.08 -0.03 4.90 16 30 H 0.07 0.45 7.93 -51.93 -0.41 0.04 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 33 H 0.06 0.34 7.87 -51.93 -0.41 -0.07 16 34 H 0.05 0.35 7.82 -51.93 -0.41 -0.05 16 35 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.40 3.33 8.25 -40.82 -0.34 3.00 16 41 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 42 H 0.07 0.89 8.08 -51.92 -0.42 0.47 16 43 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 44 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.06 1.68 7.49 -51.93 -0.39 1.29 16 50 H 0.06 1.70 7.49 -51.93 -0.39 1.31 16 LS Contribution 413.97 15.07 6.24 6.24 Total: -1.00 -32.74 413.97 -12.13 -44.87 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.18 Total: 1.35 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -4.05 Total: -6.53 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.36 Total: -49.28 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.76 Total: -13.13 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.74 -12.13 -44.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327682397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.790 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds