Wall clock time and date at job start Wed Apr 1 2020 03:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99797 * 2 1 4 4 C 1.52998 * 109.46779 * 125.00322 * 3 2 1 5 5 C 1.53007 * 109.47087 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.46931 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00210 * 270.00024 * 6 5 4 8 8 C 1.53004 * 109.46881 * 263.17925 * 7 6 5 9 9 C 1.34775 * 119.99798 * 90.00726 * 6 5 4 10 10 O 1.21355 * 120.00123 * 2.73816 * 9 6 5 11 11 C 1.49447 * 120.00021 * 182.74254 * 9 6 5 12 12 O 1.21355 * 120.00000 * 355.02763 * 11 9 6 13 13 N 1.34780 * 119.99938 * 175.02224 * 11 9 6 14 14 C 1.46499 * 119.99819 * 179.97438 * 13 11 9 15 15 C 1.50704 * 109.47213 * 180.02562 * 14 13 11 16 16 C 1.38630 * 119.75080 * 269.72638 * 15 14 13 17 17 C 1.37620 * 120.24759 * 179.71498 * 16 15 14 18 18 C 1.40709 * 119.74512 * 0.57787 * 17 16 15 19 19 C 1.41397 * 120.24431 * 179.67793 * 18 17 16 20 20 H 1.07999 * 119.99798 * 151.68064 * 19 18 17 21 21 C 1.39939 * 120.00126 * 331.67722 * 19 18 17 22 22 N 1.30830 * 119.99947 * 339.54666 * 21 19 18 23 23 Si 1.86800 * 120.00080 * 159.54501 * 21 19 18 24 24 H 1.48504 * 109.47138 * 94.98535 * 23 21 19 25 25 H 1.48501 * 109.47262 * 214.98683 * 23 21 19 26 26 H 1.48493 * 109.46988 * 334.98862 * 23 21 19 27 27 C 1.40719 * 119.51065 * 359.69956 * 18 17 16 28 28 C 1.37620 * 119.74463 * 0.02562 * 27 18 17 29 29 H 1.07998 * 120.00196 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00388 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.99304 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47154 * 4.99740 * 3 2 1 33 33 H 1.09001 * 109.46963 * 244.99612 * 3 2 1 34 34 H 1.09001 * 109.47247 * 59.99815 * 4 3 2 35 35 H 1.08997 * 109.47180 * 299.99704 * 4 3 2 36 36 H 1.09001 * 109.46927 * 59.99988 * 5 4 3 37 37 H 1.08997 * 109.47171 * 300.00080 * 5 4 3 38 38 H 1.09000 * 109.46910 * 23.17820 * 7 6 5 39 39 H 1.08999 * 109.47037 * 143.17794 * 7 6 5 40 40 H 1.08999 * 109.47392 * 60.00087 * 8 7 6 41 41 H 1.09006 * 109.46781 * 179.97438 * 8 7 6 42 42 H 1.09000 * 109.47263 * 299.99679 * 8 7 6 43 43 H 0.96993 * 119.99928 * 0.02562 * 13 11 9 44 44 H 1.09006 * 109.47269 * 60.00481 * 14 13 11 45 45 H 1.09002 * 109.47233 * 300.00286 * 14 13 11 46 46 H 1.08003 * 119.87563 * 359.97438 * 16 15 14 47 47 H 1.08005 * 120.12553 * 180.27815 * 17 16 15 48 48 H 0.96995 * 119.99741 * 179.97438 * 22 21 19 49 49 H 1.08003 * 120.12669 * 179.97438 * 27 18 17 50 50 H 1.07999 * 119.87252 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.8005 2.6578 1.1813 6 7 4.7303 2.6848 2.3130 7 6 4.2951 3.2185 3.6061 8 6 4.7373 4.6780 3.7302 9 6 5.9862 2.2186 2.1646 10 8 6.3623 1.8227 1.0809 11 6 6.9155 2.1893 3.3346 12 8 6.5709 2.6676 4.3954 13 7 8.1363 1.6315 3.2117 14 6 9.0475 1.6033 4.3585 15 6 10.3360 0.9310 3.9599 16 6 10.4740 -0.4395 4.1163 17 6 11.6441 -1.0647 3.7502 18 6 12.7070 -0.3057 3.2267 19 6 13.9163 -0.9363 2.8535 20 1 14.5291 -0.5099 2.0731 21 6 14.3190 -2.1128 3.4954 22 7 13.8302 -2.4173 4.6701 23 14 15.5544 -3.2485 2.6748 24 1 16.9197 -2.9327 3.1664 25 1 15.2242 -4.6587 3.0025 26 1 15.5016 -3.0569 1.2032 27 6 12.5577 1.0856 3.0778 28 6 11.3766 1.6888 3.4452 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7399 0.5065 1.0920 35 1 2.4773 1.2355 2.1130 36 1 3.0958 3.4846 1.2707 37 1 4.3583 2.7549 0.2499 38 1 3.2089 3.1607 3.6760 39 1 4.7426 2.6336 4.4097 40 1 4.2898 5.2628 2.9266 41 1 4.4131 5.0752 4.6922 42 1 5.8235 4.7358 3.6603 43 1 8.4118 1.2495 2.3638 44 1 8.5859 1.0490 5.1758 45 1 9.2553 2.6230 4.6827 46 1 9.6587 -1.0193 4.5232 47 1 11.7478 -2.1332 3.8688 48 1 14.1091 -3.2329 5.1148 49 1 13.3673 1.6778 2.6774 50 1 11.2600 2.7565 3.3322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335596187.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:51 Heat of formation + Delta-G solvation = -40.728152 kcal Electronic energy + Delta-G solvation = -28880.375689 eV Core-core repulsion = 24872.500193 eV Total energy + Delta-G solvation = -4007.875496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.80501 -38.65112 -37.67126 -36.96452 -35.82638 -34.67869 -33.43316 -32.25040 -30.46912 -30.12861 -29.42275 -27.55126 -26.58733 -24.54536 -23.62894 -22.88376 -21.54232 -21.12375 -20.24528 -20.16491 -19.51886 -17.72354 -17.39746 -17.05811 -16.12049 -15.85182 -15.57727 -15.40651 -15.27709 -14.68252 -14.62602 -14.18775 -14.01445 -13.88889 -13.72574 -13.47087 -13.36390 -12.94749 -12.69612 -12.57867 -12.31870 -12.21391 -12.11503 -12.05217 -11.78406 -11.63052 -11.38134 -11.31060 -11.25412 -11.12131 -11.01938 -10.93498 -10.66066 -10.56406 -9.74213 -9.71584 -9.53342 -9.31908 -9.19029 -8.98236 -8.76707 -7.59646 -7.47621 -6.90475 -4.47469 1.53029 1.93861 2.28276 2.67985 2.94993 3.02229 3.03353 3.10396 3.30606 3.65234 3.85852 4.41447 4.44825 4.57110 4.67080 4.82323 4.83754 4.98150 5.07117 5.11290 5.24316 5.35151 5.37399 5.50127 5.54237 5.55133 5.63940 5.69243 5.75427 5.79664 5.86302 5.95816 6.07631 6.18001 6.20107 6.27190 6.29438 6.33065 6.43065 6.61811 6.83361 6.95442 6.97273 7.11688 7.20484 7.44486 7.48783 7.69845 7.86403 7.92906 7.94955 8.15987 8.19445 8.50624 8.76363 8.83591 10.06366 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.001952 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.313635 B =14338.535372 C =15685.745137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.092 4.092 4 C -0.131 4.131 5 C 0.112 3.888 6 N -0.588 5.588 7 C 0.093 3.907 8 C -0.159 4.159 9 C 0.505 3.495 10 O -0.520 6.520 11 C 0.496 3.504 12 O -0.526 6.526 13 N -0.682 5.682 14 C 0.183 3.817 15 C -0.249 4.249 16 C -0.078 4.078 17 C -0.168 4.168 18 C 0.122 3.878 19 C -0.463 4.463 20 H 0.081 0.919 21 C 0.079 3.921 22 N -0.785 5.785 23 Si 0.906 3.094 24 H -0.270 1.270 25 H -0.274 1.274 26 H -0.259 1.259 27 C -0.227 4.227 28 C -0.067 4.067 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.412 0.588 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.110 0.890 48 H 0.283 0.717 49 H 0.094 0.906 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.964 7.008 -4.183 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.168 4.168 3 C -0.129 4.129 4 C -0.170 4.170 5 C -0.011 4.011 6 N -0.321 5.321 7 C -0.029 4.029 8 C -0.217 4.217 9 C 0.288 3.712 10 O -0.395 6.395 11 C 0.277 3.723 12 O -0.405 6.405 13 N -0.334 5.334 14 C 0.062 3.938 15 C -0.251 4.251 16 C -0.097 4.097 17 C -0.187 4.187 18 C 0.119 3.881 19 C -0.492 4.492 20 H 0.099 0.901 21 C -0.141 4.141 22 N -0.409 5.409 23 Si 0.729 3.271 24 H -0.195 1.195 25 H -0.199 1.199 26 H -0.183 1.183 27 C -0.246 4.246 28 C -0.086 4.086 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.248 0.752 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.107 0.893 47 H 0.128 0.872 48 H 0.094 0.906 49 H 0.113 0.887 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.960 6.968 -3.785 22.409 hybrid contribution 0.676 -0.780 -0.578 1.183 sum -20.284 6.187 -4.363 21.651 Atomic orbital electron populations 1.23843 0.95938 1.01778 1.01975 1.22977 0.96015 0.98640 0.99152 1.20692 0.97942 0.95490 0.98817 1.21910 0.98137 0.98294 0.98611 1.21606 0.91799 0.97673 0.89983 1.47889 1.10951 1.60178 1.13099 1.22125 0.99503 0.96126 0.85127 1.22069 1.02613 0.95580 1.01413 1.20445 0.83007 0.78619 0.89145 1.90759 1.75648 1.46020 1.27116 1.20070 0.83520 0.80366 0.88349 1.90636 1.74663 1.46311 1.28866 1.46503 1.13587 1.56439 1.16852 1.20109 0.87320 0.99966 0.86405 1.18913 0.95276 0.94224 1.16706 1.20529 0.96937 0.93215 0.98973 1.21150 0.92448 0.99328 1.05810 1.17662 0.92300 0.90642 0.87483 1.19622 1.05209 1.06477 1.17887 0.90140 1.25929 0.96775 0.97648 0.93706 1.69834 1.37374 1.22950 1.10780 0.86342 0.80357 0.79278 0.81077 1.19486 1.19931 1.18283 1.20998 0.97517 0.94678 1.11431 1.20422 0.93485 0.96991 0.97676 0.88665 0.88593 0.87337 0.91396 0.90575 0.91144 0.91542 0.90188 0.89478 0.91147 0.86778 0.93427 0.91538 0.91909 0.75162 0.91676 0.91742 0.89305 0.87197 0.90641 0.88748 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.32 14.32 29.01 0.42 -0.91 16 2 C -0.15 -1.11 9.52 -36.03 -0.34 -1.45 16 3 C -0.09 -0.64 5.66 -27.88 -0.16 -0.80 16 4 C -0.13 -1.09 5.52 -26.73 -0.15 -1.24 16 5 C 0.11 0.99 5.40 -4.04 -0.02 0.97 16 6 N -0.59 -6.57 2.49 -174.19 -0.43 -7.00 16 7 C 0.09 0.91 5.71 -4.04 -0.02 0.89 16 8 C -0.16 -1.52 9.71 37.16 0.36 -1.16 16 9 C 0.50 7.21 7.68 -11.59 -0.09 7.12 16 10 O -0.52 -8.53 16.05 5.49 0.09 -8.44 16 11 C 0.50 7.59 7.64 -11.58 -0.09 7.51 16 12 O -0.53 -8.29 11.77 5.49 0.06 -8.23 16 13 N -0.68 -11.00 5.54 -61.90 -0.34 -11.34 16 14 C 0.18 3.15 5.79 -5.19 -0.03 3.12 16 15 C -0.25 -5.08 5.27 -104.33 -0.55 -5.63 16 16 C -0.08 -1.71 9.67 -39.66 -0.38 -2.09 16 17 C -0.17 -4.17 8.69 -38.87 -0.34 -4.51 16 18 C 0.12 3.13 5.52 -106.83 -0.59 2.54 16 19 C -0.46 -11.89 9.02 -37.74 -0.34 -12.23 16 20 H 0.08 1.99 7.92 -52.49 -0.42 1.57 16 21 C 0.08 1.92 5.04 -17.34 -0.09 1.83 16 22 N -0.79 -19.74 11.40 55.55 0.63 -19.10 16 23 Si 0.91 18.08 29.61 -169.99 -5.03 13.05 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 27 C -0.23 -5.34 9.80 -38.87 -0.38 -5.72 16 28 C -0.07 -1.42 9.67 -39.66 -0.38 -1.80 16 29 H 0.10 0.55 7.84 -52.49 -0.41 0.14 16 30 H 0.10 0.57 8.06 -52.49 -0.42 0.14 16 31 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.07 0.40 7.79 -51.93 -0.40 -0.01 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 37 H 0.09 0.87 7.39 -51.93 -0.38 0.49 16 38 H 0.07 0.52 8.02 -51.93 -0.42 0.10 16 39 H 0.11 1.33 5.45 -51.93 -0.28 1.05 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.75 6.93 -51.93 -0.36 0.39 16 43 H 0.41 6.77 7.94 -40.82 -0.32 6.44 16 44 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 45 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 46 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 47 H 0.11 2.82 6.56 -52.48 -0.34 2.48 16 48 H 0.28 6.44 8.30 -40.82 -0.34 6.11 16 49 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 50 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 417.16 15.07 6.29 6.29 Total: -1.00 -27.37 417.16 -9.88 -37.24 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -7.96 Total: 11.08 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -3.18 Total: -13.55 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.14 Total: -37.44 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.15 Total: -16.67 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -27.37 -9.88 -37.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335596187.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.483 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds