Wall clock time and date at job start Wed Apr 1 2020 03:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99797 * 2 1 4 4 C 1.52998 * 109.46779 * 125.00322 * 3 2 1 5 5 C 1.53007 * 109.47087 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.46931 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00210 * 270.00024 * 6 5 4 8 8 C 1.53004 * 109.46881 * 263.17925 * 7 6 5 9 9 C 1.34775 * 119.99798 * 90.00726 * 6 5 4 10 10 O 1.21355 * 120.00123 * 2.73816 * 9 6 5 11 11 C 1.49447 * 120.00021 * 182.74254 * 9 6 5 12 12 O 1.21355 * 120.00000 * 355.02763 * 11 9 6 13 13 N 1.34780 * 119.99938 * 175.02224 * 11 9 6 14 14 C 1.46499 * 119.99819 * 179.97438 * 13 11 9 15 15 C 1.50704 * 109.47213 * 180.02562 * 14 13 11 16 16 C 1.38630 * 119.75080 * 269.72638 * 15 14 13 17 17 C 1.37620 * 120.24759 * 179.71498 * 16 15 14 18 18 C 1.40709 * 119.74512 * 0.57787 * 17 16 15 19 19 C 1.41397 * 120.24431 * 179.67793 * 18 17 16 20 20 H 1.07999 * 119.99798 * 151.68064 * 19 18 17 21 21 C 1.39939 * 120.00126 * 331.67722 * 19 18 17 22 22 N 1.30830 * 119.99947 * 339.54666 * 21 19 18 23 23 Si 1.86800 * 120.00080 * 159.54501 * 21 19 18 24 24 H 1.48504 * 109.47138 * 94.98535 * 23 21 19 25 25 H 1.48501 * 109.47262 * 214.98683 * 23 21 19 26 26 H 1.48493 * 109.46988 * 334.98862 * 23 21 19 27 27 C 1.40719 * 119.51065 * 359.69956 * 18 17 16 28 28 C 1.37620 * 119.74463 * 0.02562 * 27 18 17 29 29 H 1.07998 * 120.00196 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00388 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.99304 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47154 * 4.99740 * 3 2 1 33 33 H 1.09001 * 109.46963 * 244.99612 * 3 2 1 34 34 H 1.09001 * 109.47247 * 59.99815 * 4 3 2 35 35 H 1.08997 * 109.47180 * 299.99704 * 4 3 2 36 36 H 1.09001 * 109.46927 * 59.99988 * 5 4 3 37 37 H 1.08997 * 109.47171 * 300.00080 * 5 4 3 38 38 H 1.09000 * 109.46910 * 23.17820 * 7 6 5 39 39 H 1.08999 * 109.47037 * 143.17794 * 7 6 5 40 40 H 1.08999 * 109.47392 * 60.00087 * 8 7 6 41 41 H 1.09006 * 109.46781 * 179.97438 * 8 7 6 42 42 H 1.09000 * 109.47263 * 299.99679 * 8 7 6 43 43 H 0.96993 * 119.99928 * 0.02562 * 13 11 9 44 44 H 1.09006 * 109.47269 * 60.00481 * 14 13 11 45 45 H 1.09002 * 109.47233 * 300.00286 * 14 13 11 46 46 H 1.08003 * 119.87563 * 359.97438 * 16 15 14 47 47 H 1.08005 * 120.12553 * 180.27815 * 17 16 15 48 48 H 0.96995 * 119.99741 * 179.97438 * 22 21 19 49 49 H 1.08003 * 120.12669 * 179.97438 * 27 18 17 50 50 H 1.07999 * 119.87252 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.8005 2.6578 1.1813 6 7 4.7303 2.6848 2.3130 7 6 4.2951 3.2185 3.6061 8 6 4.7373 4.6780 3.7302 9 6 5.9862 2.2186 2.1646 10 8 6.3623 1.8227 1.0809 11 6 6.9155 2.1893 3.3346 12 8 6.5709 2.6676 4.3954 13 7 8.1363 1.6315 3.2117 14 6 9.0475 1.6033 4.3585 15 6 10.3360 0.9310 3.9599 16 6 10.4740 -0.4395 4.1163 17 6 11.6441 -1.0647 3.7502 18 6 12.7070 -0.3057 3.2267 19 6 13.9163 -0.9363 2.8535 20 1 14.5291 -0.5099 2.0731 21 6 14.3190 -2.1128 3.4954 22 7 13.8302 -2.4173 4.6701 23 14 15.5544 -3.2485 2.6748 24 1 16.9197 -2.9327 3.1664 25 1 15.2242 -4.6587 3.0025 26 1 15.5016 -3.0569 1.2032 27 6 12.5577 1.0856 3.0778 28 6 11.3766 1.6888 3.4452 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7399 0.5065 1.0920 35 1 2.4773 1.2355 2.1130 36 1 3.0958 3.4846 1.2707 37 1 4.3583 2.7549 0.2499 38 1 3.2089 3.1607 3.6760 39 1 4.7426 2.6336 4.4097 40 1 4.2898 5.2628 2.9266 41 1 4.4131 5.0752 4.6922 42 1 5.8235 4.7358 3.6603 43 1 8.4118 1.2495 2.3638 44 1 8.5859 1.0490 5.1758 45 1 9.2553 2.6230 4.6827 46 1 9.6587 -1.0193 4.5232 47 1 11.7478 -2.1332 3.8688 48 1 14.1091 -3.2329 5.1148 49 1 13.3673 1.6778 2.6774 50 1 11.2600 2.7565 3.3322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335596187.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:50 Heat of formation + Delta-G solvation = -53.760319 kcal Electronic energy + Delta-G solvation = -28880.940806 eV Core-core repulsion = 24872.500193 eV Total energy + Delta-G solvation = -4008.440613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.92589 -39.95392 -39.27709 -37.89702 -36.67477 -36.06651 -35.03921 -32.92749 -32.15682 -31.23123 -30.93906 -29.00229 -27.61672 -25.88104 -24.74067 -23.82054 -22.94500 -22.48698 -21.86692 -20.88518 -20.51694 -19.24629 -18.80606 -18.10098 -17.29281 -17.09322 -16.87226 -16.51032 -16.24776 -15.96437 -15.79721 -15.59348 -15.21597 -15.16285 -14.84923 -14.53988 -14.37464 -14.26997 -13.86372 -13.78122 -13.61159 -13.40100 -13.33939 -13.11045 -12.99634 -12.83354 -12.77624 -12.51427 -12.41243 -12.27902 -12.19708 -11.91974 -11.82133 -11.65284 -11.49409 -11.33480 -11.03977 -10.46712 -10.25776 -10.15886 -9.78571 -9.41322 -9.30058 -8.71014 -6.38365 0.36606 0.76784 1.10372 1.31834 1.37874 1.42442 1.51178 1.56753 2.13770 2.19058 2.48041 2.74787 3.35738 3.70140 3.84251 3.94377 4.10229 4.11554 4.22616 4.27479 4.33616 4.43000 4.48110 4.49324 4.56524 4.62654 4.63872 4.68468 4.73136 4.84355 4.92446 5.00447 5.01947 5.04446 5.13942 5.16916 5.21620 5.28962 5.30544 5.38400 5.44659 5.48164 5.66633 5.77997 5.84756 5.89788 5.97630 6.05754 6.14199 6.29022 6.34181 6.64537 6.69878 6.89450 6.96285 6.97736 8.28587 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.001952 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.313635 B =14338.535372 C =15685.745137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.168 4.168 3 C -0.086 4.086 4 C -0.123 4.123 5 C 0.109 3.891 6 N -0.576 5.576 7 C 0.091 3.909 8 C -0.154 4.154 9 C 0.502 3.498 10 O -0.549 6.549 11 C 0.498 3.502 12 O -0.528 6.528 13 N -0.687 5.687 14 C 0.193 3.807 15 C -0.232 4.232 16 C -0.080 4.080 17 C -0.191 4.191 18 C 0.090 3.910 19 C -0.503 4.503 20 H 0.077 0.923 21 C 0.039 3.961 22 N -0.820 5.820 23 Si 0.978 3.022 24 H -0.262 1.262 25 H -0.266 1.266 26 H -0.259 1.259 27 C -0.242 4.242 28 C -0.067 4.067 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.411 0.589 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.290 0.710 49 H 0.099 0.901 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.449 8.280 -4.233 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.187 4.187 3 C -0.124 4.124 4 C -0.162 4.162 5 C -0.012 4.012 6 N -0.308 5.308 7 C -0.031 4.031 8 C -0.212 4.212 9 C 0.285 3.715 10 O -0.427 6.427 11 C 0.279 3.721 12 O -0.407 6.407 13 N -0.338 5.338 14 C 0.072 3.928 15 C -0.233 4.233 16 C -0.099 4.099 17 C -0.210 4.210 18 C 0.088 3.912 19 C -0.532 4.532 20 H 0.095 0.905 21 C -0.177 4.177 22 N -0.445 5.445 23 Si 0.798 3.202 24 H -0.186 1.186 25 H -0.190 1.190 26 H -0.183 1.183 27 C -0.261 4.261 28 C -0.085 4.085 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.247 0.753 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.126 0.874 47 H 0.110 0.890 48 H 0.100 0.900 49 H 0.117 0.883 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.490 8.269 -3.817 25.194 hybrid contribution 1.207 -1.036 -0.505 1.669 sum -22.283 7.233 -4.321 23.823 Atomic orbital electron populations 1.24018 0.95686 1.02665 1.00479 1.23021 0.96476 0.98616 1.00548 1.20651 0.97838 0.95946 0.97938 1.21818 0.97775 0.96910 0.99649 1.21828 0.91664 0.99182 0.88564 1.48034 1.10056 1.58397 1.14339 1.22225 1.01373 0.95786 0.83673 1.22026 1.00819 0.95580 1.02801 1.20251 0.83920 0.79082 0.88255 1.90751 1.76377 1.47804 1.27799 1.20252 0.83269 0.79821 0.88728 1.90649 1.74680 1.46213 1.29157 1.46304 1.13961 1.57170 1.16356 1.19942 0.85955 1.00152 0.86780 1.19207 0.96381 0.93581 1.14144 1.20764 0.96484 0.94248 0.98362 1.21111 0.93641 0.98679 1.07575 1.18001 0.92847 0.91827 0.88568 1.19847 1.05988 1.08352 1.18994 0.90484 1.26731 0.98559 0.98519 0.93859 1.69874 1.38998 1.23755 1.11917 0.85259 0.77956 0.77239 0.79700 1.18627 1.19028 1.18306 1.21195 0.98797 0.94176 1.11971 1.20729 0.92673 0.98518 0.96610 0.87429 0.88105 0.88231 0.89493 0.90941 0.93820 0.90836 0.86834 0.90678 0.87761 0.88622 0.91959 0.90210 0.94663 0.75326 0.91130 0.90744 0.87442 0.89006 0.89966 0.88311 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 14.32 67.78 0.97 -1.19 16 2 C -0.17 -2.27 9.52 25.65 0.24 -2.03 16 3 C -0.09 -1.04 5.66 29.85 0.17 -0.87 16 4 C -0.12 -1.84 5.52 30.60 0.17 -1.67 16 5 C 0.11 1.68 5.40 86.38 0.47 2.15 16 6 N -0.58 -11.78 2.49 -823.38 -2.05 -13.83 16 7 C 0.09 1.53 5.71 86.38 0.49 2.02 16 8 C -0.15 -2.55 9.71 71.98 0.70 -1.85 16 9 C 0.50 13.92 7.68 87.27 0.67 14.59 16 10 O -0.55 -17.96 16.05 -3.26 -0.05 -18.02 16 11 C 0.50 14.71 7.64 87.27 0.67 15.38 16 12 O -0.53 -15.89 11.77 -3.26 -0.04 -15.93 16 13 N -0.69 -21.41 5.54 -468.12 -2.59 -24.00 16 14 C 0.19 6.34 5.79 85.63 0.50 6.83 16 15 C -0.23 -9.23 5.27 -19.68 -0.10 -9.33 16 16 C -0.08 -3.53 9.67 22.22 0.21 -3.31 16 17 C -0.19 -9.79 8.69 22.73 0.20 -9.59 16 18 C 0.09 4.79 5.52 -21.29 -0.12 4.67 16 19 C -0.50 -26.90 9.02 23.46 0.21 -26.69 16 20 H 0.08 3.99 7.92 -2.91 -0.02 3.96 16 21 C 0.04 1.97 5.04 85.25 0.43 2.40 16 22 N -0.82 -42.61 11.40 21.83 0.25 -42.36 16 23 Si 0.98 37.87 29.61 68.60 2.03 39.90 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 26 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 27 C -0.24 -11.59 9.80 22.73 0.22 -11.37 16 28 C -0.07 -2.78 9.67 22.22 0.21 -2.56 16 29 H 0.11 0.94 7.84 -2.91 -0.02 0.91 16 30 H 0.10 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.10 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.09 0.73 7.79 -2.39 -0.02 0.71 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 1.04 8.07 -2.39 -0.02 1.02 16 37 H 0.07 1.39 7.39 -2.39 -0.02 1.38 16 38 H 0.10 1.10 8.02 -2.39 -0.02 1.08 16 39 H 0.10 2.04 5.45 -2.39 -0.01 2.03 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.03 0.78 6.93 -2.39 -0.02 0.76 16 43 H 0.41 13.29 7.94 -92.71 -0.74 12.55 16 44 H 0.07 2.27 8.08 -2.38 -0.02 2.25 16 45 H 0.07 2.33 8.08 -2.39 -0.02 2.32 16 46 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 47 H 0.09 4.96 6.56 -2.91 -0.02 4.94 16 48 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 49 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 50 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -61.31 417.16 4.05 -57.26 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: 0.19 Total: 39.39 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 6.31 Total: -22.42 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -4.39 Total: -80.19 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.09 Total: -33.94 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -61.31 4.05 -57.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335596187.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.496 kcal (2) G-P(sol) polarization free energy of solvation -61.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds