Wall clock time and date at job start Wed Apr 1 2020 04:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47372 * 2 1 4 4 C 1.46503 * 119.99670 * 85.25282 * 3 2 1 5 5 C 1.50696 * 109.47385 * 89.99965 * 4 3 2 6 6 H 1.08002 * 119.99962 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00509 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99262 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00256 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47134 * 90.00110 * 9 7 5 11 11 H 1.48497 * 109.47317 * 329.99779 * 9 7 5 12 12 H 1.48502 * 109.47395 * 210.00037 * 9 7 5 13 13 C 1.34776 * 120.00479 * 265.25384 * 3 2 1 14 14 O 1.21281 * 119.99712 * 5.23922 * 13 3 2 15 15 C 1.50697 * 120.00240 * 185.24313 * 13 3 2 16 16 H 1.09002 * 109.87101 * 315.97877 * 15 13 3 17 17 C 1.54322 * 109.88391 * 76.99136 * 15 13 3 18 18 C 1.55155 * 102.94280 * 141.61265 * 17 15 13 19 19 C 1.54916 * 101.58090 * 324.49938 * 18 17 15 20 20 N 1.47015 * 109.88261 * 194.96469 * 15 13 3 21 21 C 1.34770 * 125.65238 * 61.60466 * 20 15 13 22 22 O 1.21553 * 120.00662 * 182.33192 * 21 20 15 23 23 C 1.47846 * 119.99922 * 2.32823 * 21 20 15 24 24 C 1.39594 * 120.14420 * 5.90588 * 23 21 20 25 25 C 1.37940 * 119.85628 * 179.97438 * 24 23 21 26 26 C 1.38379 * 120.14427 * 0.02862 * 25 24 23 27 27 C 1.38336 * 120.29139 * 359.94694 * 26 25 24 28 28 C 1.50707 * 119.92978 * 180.02562 * 27 26 25 29 29 C 1.37981 * 120.14619 * 359.79212 * 27 26 25 30 30 H 1.08996 * 109.47272 * 185.01388 * 1 2 3 31 31 H 1.09002 * 109.46751 * 305.01745 * 1 2 3 32 32 H 1.09002 * 109.47132 * 65.01009 * 1 2 3 33 33 H 1.09003 * 109.46728 * 240.00378 * 2 1 3 34 34 H 1.08996 * 109.47088 * 120.00872 * 2 1 3 35 35 H 1.09004 * 109.46967 * 329.99984 * 4 3 2 36 36 H 1.08996 * 109.47221 * 210.00414 * 4 3 2 37 37 H 0.96995 * 120.00071 * 359.97438 * 8 7 5 38 38 H 1.09003 * 110.72040 * 259.97682 * 17 15 13 39 39 H 1.09000 * 110.72043 * 23.07127 * 17 15 13 40 40 H 1.09007 * 111.00575 * 82.56951 * 18 17 15 41 41 H 1.08995 * 111.00842 * 206.38496 * 18 17 15 42 42 H 1.09001 * 110.36446 * 155.84250 * 19 18 17 43 43 H 1.08997 * 110.36670 * 278.06233 * 19 18 17 44 44 H 1.08005 * 120.07391 * 359.95672 * 24 23 21 45 45 H 1.07992 * 119.92795 * 179.97438 * 25 24 23 46 46 H 1.07994 * 119.85575 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.47201 * 89.99700 * 28 27 26 48 48 H 1.09001 * 109.47108 * 210.00601 * 28 27 26 49 49 H 1.09004 * 109.46742 * 329.99772 * 28 27 26 50 50 H 1.08008 * 120.07707 * 180.22903 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1636 2.1067 1.2644 5 6 3.5483 1.8835 1.8156 6 1 4.2499 1.2629 1.2781 7 6 3.9192 2.4707 3.0067 8 7 3.0642 3.2253 3.6621 9 14 5.6358 2.1945 3.6895 10 1 6.5488 3.2458 3.1735 11 1 6.1283 0.8594 3.2654 12 1 5.5949 2.2589 5.1726 13 6 2.3341 1.9844 -1.1631 14 8 2.1249 1.4193 -2.2156 15 6 2.9472 3.3610 -1.1559 16 1 2.4214 3.9971 -0.4438 17 6 4.4398 3.2689 -0.7749 18 6 5.0996 4.3294 -1.6954 19 6 4.2470 4.1979 -2.9821 20 7 2.8723 3.9488 -2.5014 21 6 1.7390 4.2134 -3.1810 22 8 1.7974 4.6629 -4.3089 23 6 0.4245 3.9569 -2.5548 24 6 0.3502 3.5582 -1.2191 25 6 -0.8794 3.3210 -0.6406 26 6 -2.0376 3.4769 -1.3816 27 6 -1.9710 3.8722 -2.7056 28 6 -3.2377 4.0401 -3.5048 29 6 -0.7478 4.1179 -3.2947 30 1 -0.3633 -1.0237 0.0898 31 1 -0.3633 0.5897 0.8417 32 1 -0.3633 0.4342 -0.9315 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.4251 1.7430 1.9789 36 1 2.0084 3.1718 1.0921 37 1 2.1730 3.3689 3.3073 38 1 4.5864 3.5244 0.2746 39 1 4.8311 2.2738 -0.9863 40 1 5.0099 5.3281 -1.2677 41 1 6.1431 4.0825 -1.8905 42 1 4.2843 5.1227 -3.5580 43 1 4.5982 3.3613 -3.5860 44 1 1.2535 3.4354 -0.6399 45 1 -0.9382 3.0121 0.3925 46 1 -2.9978 3.2895 -0.9242 47 1 -3.5964 5.0646 -3.4063 48 1 -3.0363 3.8248 -4.5542 49 1 -3.9964 3.3520 -3.1319 50 1 -0.6973 4.4302 -4.3275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361888674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:21 Heat of formation + Delta-G solvation = -12.371297 kcal Electronic energy + Delta-G solvation = -32855.480171 eV Core-core repulsion = 28848.834321 eV Total energy + Delta-G solvation = -4006.645850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.17115 -39.05463 -38.39694 -36.76635 -35.50203 -33.20710 -33.13137 -31.46878 -31.19480 -30.56930 -28.89154 -26.78052 -26.76860 -24.97543 -23.40114 -23.15223 -22.24973 -21.61780 -20.98027 -19.86175 -18.54746 -17.41942 -17.04054 -16.63026 -16.39815 -15.62382 -15.55502 -15.10666 -14.73443 -14.38444 -14.24570 -13.93223 -13.88021 -13.64851 -13.53767 -13.36821 -13.06634 -12.76497 -12.66739 -12.52100 -12.31383 -12.21479 -12.18933 -11.85392 -11.79332 -11.58904 -11.42934 -11.25692 -11.14364 -10.88939 -10.84243 -10.80885 -10.47750 -10.30917 -10.28561 -9.71270 -9.42333 -9.36215 -8.84052 -8.65859 -8.58635 -8.34359 -7.84000 -6.63522 -4.40627 1.02361 1.46902 2.90712 3.11718 3.14688 3.27343 3.31836 3.46173 3.71554 4.05279 4.30626 4.50648 4.75467 4.79789 4.91387 4.95625 5.05872 5.07731 5.12943 5.23246 5.30780 5.34004 5.49690 5.52052 5.53826 5.59208 5.65767 5.68214 5.76177 5.76709 5.87149 5.95922 6.00790 6.02979 6.11239 6.14102 6.22958 6.29625 6.38332 6.43123 6.49940 6.50804 6.53754 6.59060 6.61513 6.67828 7.02322 7.22855 7.61350 7.69810 7.95702 8.24838 8.33985 8.51835 8.73978 9.29250 10.71840 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.004814 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.052607 B = 5815.203662 C = 7047.223504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.590 5.590 4 C 0.223 3.777 5 C -0.615 4.615 6 H 0.060 0.940 7 C 0.027 3.973 8 N -0.901 5.901 9 Si 1.065 2.935 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.283 1.283 13 C 0.509 3.491 14 O -0.553 6.553 15 C 0.106 3.894 16 H 0.109 0.891 17 C -0.112 4.112 18 C -0.136 4.136 19 C 0.108 3.892 20 N -0.593 5.593 21 C 0.586 3.414 22 O -0.547 6.547 23 C -0.116 4.116 24 C -0.129 4.129 25 C -0.113 4.113 26 C -0.100 4.100 27 C -0.101 4.101 28 C -0.110 4.110 29 C -0.065 4.065 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.030 0.970 36 H 0.023 0.977 37 H 0.269 0.731 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.161 0.839 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 0.995 -6.736 8.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.321 5.321 4 C 0.103 3.897 5 C -0.654 4.654 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.536 5.536 9 Si 0.893 3.107 10 H -0.211 1.211 11 H -0.213 1.213 12 H -0.209 1.209 13 C 0.295 3.705 14 O -0.432 6.432 15 C -0.001 4.001 16 H 0.126 0.874 17 C -0.150 4.150 18 C -0.174 4.174 19 C -0.014 4.014 20 N -0.325 5.325 21 C 0.377 3.623 22 O -0.426 6.426 23 C -0.119 4.119 24 C -0.146 4.146 25 C -0.131 4.131 26 C -0.118 4.118 27 C -0.101 4.101 28 C -0.167 4.167 29 C -0.084 4.084 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.178 0.822 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.287 1.321 -6.653 8.024 hybrid contribution -1.043 -0.601 -0.950 1.534 sum -5.330 0.720 -7.603 9.313 Atomic orbital electron populations 1.22117 0.96706 1.01301 1.01986 1.21239 0.93550 0.83280 1.02507 1.48049 1.62927 1.13839 1.07287 1.19572 0.98403 0.91183 0.80529 1.22299 0.98274 1.35127 1.09687 0.92209 1.25760 1.05168 0.93369 0.93599 1.70816 1.07022 1.35496 1.40241 0.83565 0.74217 0.76231 0.76668 1.21083 1.21326 1.20880 1.20385 0.78119 0.87849 0.84102 1.90659 1.55144 1.66344 1.31032 1.22157 1.00136 0.92832 0.84938 0.87413 1.22738 0.89714 0.99847 1.02721 1.22879 0.99348 1.00281 0.94863 1.22314 0.80499 1.01606 0.96945 1.48170 1.06135 1.61099 1.17141 1.17860 0.83003 0.76881 0.84567 1.90709 1.87153 1.46768 1.17988 1.19779 0.93093 1.04197 0.94802 1.22910 1.00658 0.96183 0.94849 1.21092 0.92039 0.99752 1.00198 1.21197 0.98453 0.98555 0.93607 1.19820 0.94934 1.00635 0.94701 1.20756 0.94308 1.02123 0.99484 1.21046 0.90490 0.96981 0.99864 0.92398 0.92624 0.92667 0.90958 0.90508 0.95208 0.95970 0.92058 0.86417 0.90409 0.90288 0.89467 0.90238 0.91274 0.82240 0.85591 0.85934 0.91219 0.91513 0.91557 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.24 37.16 0.38 -2.08 16 2 C 0.12 2.04 6.14 -4.04 -0.02 2.02 16 3 N -0.59 -11.24 2.24 -175.06 -0.39 -11.63 16 4 C 0.22 4.60 3.95 -5.19 -0.02 4.58 16 5 C -0.62 -13.99 6.89 -34.44 -0.24 -14.22 16 6 H 0.06 1.40 7.81 -52.49 -0.41 0.99 16 7 C 0.03 0.65 5.46 -17.81 -0.10 0.55 16 8 N -0.90 -23.19 13.65 55.43 0.76 -22.43 16 9 Si 1.07 21.86 29.90 -169.99 -5.08 16.78 16 10 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 11 H -0.29 -5.73 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.51 10.04 3.64 -10.99 -0.04 10.00 16 14 O -0.55 -12.36 15.22 5.56 0.08 -12.27 16 15 C 0.11 1.92 1.80 -68.11 -0.12 1.80 16 16 H 0.11 1.98 4.74 -51.93 -0.25 1.73 16 17 C -0.11 -1.86 5.33 -24.90 -0.13 -1.99 16 18 C -0.14 -1.81 7.09 -24.58 -0.17 -1.98 16 19 C 0.11 1.66 6.92 -2.35 -0.02 1.64 16 20 N -0.59 -10.83 2.77 -167.70 -0.46 -11.29 16 21 C 0.59 11.64 7.21 -12.33 -0.09 11.55 16 22 O -0.55 -11.76 16.65 5.32 0.09 -11.67 16 23 C -0.12 -2.13 5.46 -104.97 -0.57 -2.70 16 24 C -0.13 -2.26 7.09 -39.18 -0.28 -2.53 16 25 C -0.11 -1.73 10.03 -39.64 -0.40 -2.13 16 26 C -0.10 -1.34 9.69 -39.49 -0.38 -1.73 16 27 C -0.10 -1.38 5.87 -104.68 -0.61 -2.00 16 28 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 29 C -0.06 -1.06 9.24 -39.18 -0.36 -1.42 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.30 7.36 -51.93 -0.38 0.92 16 34 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 35 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 36 H 0.02 0.47 5.36 -51.93 -0.28 0.19 16 37 H 0.27 6.81 7.22 -40.82 -0.29 6.52 16 38 H 0.12 2.10 6.69 -51.93 -0.35 1.76 16 39 H 0.08 1.34 7.84 -51.93 -0.41 0.93 16 40 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.16 2.92 0.81 -55.89 -0.05 2.88 16 45 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 46 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 49 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 50 H 0.13 2.06 7.66 -52.48 -0.40 1.66 16 LS Contribution 392.70 15.07 5.92 5.92 Total: -1.00 -29.46 392.70 -9.42 -38.88 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.51 Total: 9.11 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.82 Total: -1.39 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.10 Total: -45.36 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.17 Total: -23.94 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.08 Total: 16.78 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.46 -9.42 -38.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361888674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.509 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds