Wall clock time and date at job start Wed Apr 1 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46951 * 2 1 4 4 C 1.52999 * 109.47060 * 120.00012 * 2 1 3 5 5 N 1.46503 * 109.46834 * 175.00310 * 4 2 1 6 6 C 1.34780 * 120.00040 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99693 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99920 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47300 * 59.99934 * 8 6 5 10 10 C 1.50703 * 109.47024 * 299.99763 * 8 6 5 11 11 H 1.07999 * 119.99924 * 324.93318 * 10 8 6 12 12 C 1.37875 * 119.99807 * 144.93523 * 10 8 6 13 13 N 1.31511 * 119.99995 * 5.09602 * 12 10 8 14 14 Si 1.86803 * 119.99721 * 185.09690 * 12 10 8 15 15 H 1.48496 * 109.47154 * 59.99727 * 14 12 10 16 16 H 1.48500 * 109.47157 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47186 * 299.99798 * 14 12 10 18 18 C 1.50699 * 109.47030 * 179.97438 * 8 6 5 19 19 C 1.38235 * 120.00232 * 66.00916 * 18 8 6 20 20 C 1.38232 * 119.99982 * 179.81393 * 19 18 8 21 21 C 1.38237 * 120.00351 * 0.39419 * 20 19 18 22 22 C 1.38238 * 119.99441 * 359.85851 * 21 20 19 23 23 C 1.38228 * 120.00179 * 359.95730 * 22 21 20 24 24 N 1.46495 * 109.46881 * 240.00224 * 2 1 3 25 25 C 1.45754 * 117.94810 * 119.73979 * 24 2 1 26 26 C 1.53100 * 110.38641 * 160.74505 * 25 24 2 27 27 C 1.53343 * 108.53326 * 51.10850 * 26 25 24 28 28 C 1.53064 * 108.42761 * 292.31239 * 27 26 25 29 29 C 1.33355 * 117.94604 * 299.99527 * 24 2 1 30 30 O 1.21283 * 118.24634 * 2.25196 * 29 24 2 31 31 H 1.08996 * 109.47494 * 60.00028 * 1 2 3 32 32 H 1.09003 * 109.46706 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46645 * 300.00042 * 1 2 3 34 34 H 1.09004 * 109.47269 * 294.99623 * 4 2 1 35 35 H 1.08993 * 109.47288 * 54.99830 * 4 2 1 36 36 H 0.97000 * 119.99872 * 359.97438 * 5 4 2 37 37 H 0.97004 * 119.99887 * 179.97438 * 13 12 10 38 38 H 1.07999 * 119.99861 * 359.97438 * 19 18 8 39 39 H 1.07999 * 119.99939 * 180.23124 * 20 19 18 40 40 H 1.07997 * 120.00185 * 179.83806 * 21 20 19 41 41 H 1.08002 * 119.99391 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.99793 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.29355 * 281.23211 * 25 24 2 44 44 H 1.08994 * 109.30147 * 40.60716 * 25 24 2 45 45 H 1.09002 * 109.80107 * 291.32145 * 26 25 24 46 46 H 1.08998 * 109.54482 * 170.75010 * 26 25 24 47 47 H 1.08995 * 109.67583 * 172.57477 * 27 26 25 48 48 H 1.09005 * 109.66904 * 52.04456 * 27 26 25 49 49 H 1.08997 * 109.39889 * 288.77170 * 28 27 26 50 50 H 1.08996 * 109.33400 * 168.98326 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1732 -1.4291 2.1907 7 8 3.5701 -1.8841 3.1394 8 6 5.6750 -1.5376 2.1300 9 1 6.1099 -0.5392 2.0842 10 6 6.0732 -2.3158 0.9024 11 1 5.4566 -3.1325 0.5572 12 6 7.2247 -1.9851 0.2200 13 7 8.0274 -1.0581 0.6952 14 14 7.6445 -2.8538 -1.3796 15 1 6.5618 -2.6203 -2.3686 16 1 8.9246 -2.3207 -1.9111 17 1 7.7814 -4.3113 -1.1302 18 6 6.1774 -2.2479 3.3605 19 6 5.8605 -3.5772 3.5691 20 6 6.3245 -4.2297 4.6959 21 6 7.0988 -3.5509 5.6182 22 6 7.4113 -2.2201 5.4121 23 6 6.9504 -1.5687 4.2835 24 7 2.0183 -0.6905 -1.1962 25 6 2.8482 0.0621 -2.1285 26 6 3.6412 -0.8915 -3.0262 27 6 2.6684 -1.9062 -3.6390 28 6 2.1401 -2.8068 -2.5197 29 6 1.6714 -1.9669 -1.3664 30 8 0.9376 -2.4765 -0.5461 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.7517 -0.1583 2.1370 35 1 1.6054 -1.7197 1.2952 36 1 3.9824 -0.4627 0.4315 37 1 8.8377 -0.8256 0.2153 38 1 5.2524 -4.1065 2.8505 39 1 6.0800 -5.2693 4.8570 40 1 7.4591 -4.0600 6.4998 41 1 8.0159 -1.6896 6.1329 42 1 7.1943 -0.5289 4.1227 43 1 2.2121 0.6974 -2.7449 44 1 3.5427 0.6880 -1.5683 45 1 4.3924 -1.4158 -2.4355 46 1 4.1272 -0.3250 -3.8205 47 1 3.1885 -2.5108 -4.3818 48 1 1.8378 -1.3801 -4.1096 49 1 2.9360 -3.4714 -2.1837 50 1 1.3077 -3.4007 -2.8970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362677593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:52 Heat of formation + Delta-G solvation = -57.765806 kcal Electronic energy + Delta-G solvation = -31827.200728 eV Core-core repulsion = 27818.586425 eV Total energy + Delta-G solvation = -4008.614304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72933 -38.98385 -37.64976 -36.36684 -35.64119 -33.63024 -32.93466 -31.09669 -30.73854 -29.88994 -29.43864 -27.63791 -25.67059 -24.45660 -23.74863 -23.11932 -21.55589 -21.10434 -20.67558 -19.16024 -18.32309 -16.93871 -16.74936 -16.48480 -15.87559 -15.75533 -15.47950 -14.86514 -14.64444 -14.46461 -14.20242 -14.07970 -13.94011 -13.80449 -13.45099 -13.23021 -13.07837 -12.59004 -12.50939 -12.40825 -12.16813 -12.13430 -11.83750 -11.63504 -11.53528 -11.49096 -11.38842 -11.11628 -11.05422 -10.98583 -10.83105 -10.73716 -10.40773 -10.23515 -9.97894 -9.42888 -9.29082 -8.77727 -8.65158 -8.53672 -8.15906 -7.89749 -7.55860 -6.28583 -4.34291 2.42595 2.45364 2.82610 3.03017 3.12398 3.21412 3.22939 3.80273 4.12176 4.25241 4.57252 4.68257 4.71863 4.79422 4.87673 5.01602 5.07845 5.18375 5.28074 5.39083 5.41098 5.44031 5.66162 5.72991 5.76117 5.81579 5.82008 5.83880 5.87311 5.91650 5.92303 5.95249 6.20268 6.24314 6.28092 6.32336 6.47439 6.55281 6.64568 6.69592 6.89236 7.02046 7.19162 7.31309 7.41362 7.49620 7.60371 7.61938 7.78281 7.99721 8.10998 8.35502 8.46254 8.69836 9.28616 9.35456 10.79636 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.004543 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.051439 B = 6161.729538 C = 7690.596916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.726 5.726 6 C 0.525 3.475 7 O -0.567 6.567 8 C 0.052 3.948 9 H 0.086 0.914 10 C -0.510 4.510 11 H 0.060 0.940 12 C 0.074 3.926 13 N -0.877 5.877 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.008 4.008 19 C -0.084 4.084 20 C -0.134 4.134 21 C -0.149 4.149 22 C -0.132 4.132 23 C -0.118 4.118 24 N -0.598 5.598 25 C 0.114 3.886 26 C -0.143 4.143 27 C -0.120 4.120 28 C -0.137 4.137 29 C 0.525 3.475 30 O -0.546 6.546 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.399 0.601 37 H 0.266 0.734 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.101 0.899 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.004 4.360 -7.769 11.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.030 3.970 3 H 0.106 0.894 4 C -0.022 4.022 5 N -0.378 5.378 6 C 0.315 3.685 7 O -0.446 6.446 8 C 0.031 3.969 9 H 0.104 0.896 10 C -0.548 4.548 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.513 5.513 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.009 4.009 19 C -0.103 4.103 20 C -0.153 4.153 21 C -0.168 4.168 22 C -0.151 4.151 23 C -0.136 4.136 24 N -0.331 5.331 25 C -0.009 4.009 26 C -0.181 4.181 27 C -0.158 4.158 28 C -0.177 4.177 29 C 0.314 3.686 30 O -0.425 6.425 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.234 0.766 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.120 0.880 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.630 3.873 -6.722 11.605 hybrid contribution 0.831 -0.226 -1.327 1.582 sum -7.799 3.648 -8.050 11.786 Atomic orbital electron populations 1.22154 0.94037 1.04755 1.01500 1.21349 0.95273 0.95904 0.84511 0.89377 1.21678 0.82203 1.02615 0.95713 1.45804 1.05864 1.61443 1.24708 1.21603 0.91588 0.74969 0.80378 1.90584 1.71388 1.48430 1.34154 1.18096 0.86432 0.99704 0.92709 0.89583 1.20626 1.08742 1.17112 1.08320 0.92193 1.24951 0.95666 0.94776 0.97671 1.69913 1.12267 1.30538 1.38600 0.86635 0.77797 0.80292 0.83229 1.19699 1.21157 1.20050 1.20010 0.93756 0.93775 0.93350 1.20816 0.98476 0.94752 0.96223 1.20947 0.99732 0.98981 0.95597 1.20786 1.01495 0.95035 0.99435 1.20889 1.01250 0.94948 0.97968 1.20966 0.99165 0.99548 0.93946 1.47352 1.51116 1.11437 1.23232 1.21482 0.93377 0.94269 0.91728 1.21989 0.98560 0.97894 0.99615 1.21623 0.99150 0.97599 0.97438 1.21681 1.03230 0.98545 0.94199 1.19998 0.80016 0.81492 0.87128 1.90632 1.36982 1.70501 1.44368 0.92786 0.89492 0.91789 0.91896 0.89566 0.76630 0.92368 0.87240 0.87650 0.87757 0.87615 0.87100 0.91972 0.90388 0.89559 0.89947 0.90800 0.91508 0.88046 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.08 37.16 0.34 -1.64 16 2 C 0.13 1.72 2.76 -67.93 -0.19 1.53 16 3 H 0.09 0.95 7.79 -51.93 -0.40 0.55 16 4 C 0.10 1.75 4.86 -4.04 -0.02 1.73 16 5 N -0.73 -13.83 5.29 -60.29 -0.32 -14.15 16 6 C 0.53 12.09 7.04 -10.99 -0.08 12.01 16 7 O -0.57 -14.54 15.41 5.56 0.09 -14.45 16 8 C 0.05 1.24 2.38 -94.08 -0.22 1.02 16 9 H 0.09 2.16 7.13 -51.93 -0.37 1.79 16 10 C -0.51 -12.61 7.47 -34.44 -0.26 -12.87 16 11 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 12 C 0.07 1.82 5.45 -17.82 -0.10 1.73 16 13 N -0.88 -22.60 12.84 55.43 0.71 -21.89 16 14 Si 0.89 19.08 29.54 -169.99 -5.02 14.06 16 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 C -0.01 -0.19 4.30 -104.62 -0.45 -0.64 16 19 C -0.08 -1.98 8.31 -39.58 -0.33 -2.31 16 20 C -0.13 -2.77 10.05 -39.58 -0.40 -3.17 16 21 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16 22 C -0.13 -2.64 10.05 -39.59 -0.40 -3.03 16 23 C -0.12 -2.64 9.67 -39.59 -0.38 -3.03 16 24 N -0.60 -7.66 2.24 -167.26 -0.37 -8.04 16 25 C 0.11 1.16 6.07 -4.39 -0.03 1.13 16 26 C -0.14 -1.49 6.03 -26.50 -0.16 -1.65 16 27 C -0.12 -1.16 6.03 -26.52 -0.16 -1.32 16 28 C -0.14 -1.66 6.03 -28.10 -0.17 -1.83 16 29 C 0.52 7.81 6.88 -11.87 -0.08 7.73 16 30 O -0.55 -9.96 12.52 5.55 0.07 -9.89 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.26 5.84 -51.93 -0.30 0.96 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.74 6.14 -51.93 -0.32 1.42 16 36 H 0.40 7.16 7.65 -40.82 -0.31 6.84 16 37 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 38 H 0.11 2.63 7.90 -52.49 -0.41 2.22 16 39 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.11 2.38 7.96 -52.48 -0.42 1.96 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.77 7.84 -51.93 -0.41 0.37 16 45 H 0.09 1.16 8.12 -51.93 -0.42 0.74 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 49 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 401.58 15.07 6.05 6.05 Total: -1.00 -30.79 401.58 -10.26 -41.05 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -7.99 Total: 15.15 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -3.48 Total: -7.89 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.02 Total: -44.08 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.16 Total: -24.34 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.79 -10.26 -41.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362677593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.716 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds