Wall clock time and date at job start Wed Apr 1 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46951 * 2 1 4 4 C 1.52999 * 109.47060 * 120.00012 * 2 1 3 5 5 N 1.46503 * 109.46834 * 175.00310 * 4 2 1 6 6 C 1.34780 * 120.00040 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99693 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99920 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47300 * 59.99934 * 8 6 5 10 10 C 1.50703 * 109.47024 * 299.99763 * 8 6 5 11 11 H 1.07999 * 119.99924 * 324.93318 * 10 8 6 12 12 C 1.37875 * 119.99807 * 144.93523 * 10 8 6 13 13 N 1.31511 * 119.99995 * 5.09602 * 12 10 8 14 14 Si 1.86803 * 119.99721 * 185.09690 * 12 10 8 15 15 H 1.48496 * 109.47154 * 59.99727 * 14 12 10 16 16 H 1.48500 * 109.47157 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47186 * 299.99798 * 14 12 10 18 18 C 1.50699 * 109.47030 * 179.97438 * 8 6 5 19 19 C 1.38235 * 120.00232 * 66.00916 * 18 8 6 20 20 C 1.38232 * 119.99982 * 179.81393 * 19 18 8 21 21 C 1.38237 * 120.00351 * 0.39419 * 20 19 18 22 22 C 1.38238 * 119.99441 * 359.85851 * 21 20 19 23 23 C 1.38228 * 120.00179 * 359.95730 * 22 21 20 24 24 N 1.46495 * 109.46881 * 240.00224 * 2 1 3 25 25 C 1.45754 * 117.94810 * 119.73979 * 24 2 1 26 26 C 1.53100 * 110.38641 * 160.74505 * 25 24 2 27 27 C 1.53343 * 108.53326 * 51.10850 * 26 25 24 28 28 C 1.53064 * 108.42761 * 292.31239 * 27 26 25 29 29 C 1.33355 * 117.94604 * 299.99527 * 24 2 1 30 30 O 1.21283 * 118.24634 * 2.25196 * 29 24 2 31 31 H 1.08996 * 109.47494 * 60.00028 * 1 2 3 32 32 H 1.09003 * 109.46706 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46645 * 300.00042 * 1 2 3 34 34 H 1.09004 * 109.47269 * 294.99623 * 4 2 1 35 35 H 1.08993 * 109.47288 * 54.99830 * 4 2 1 36 36 H 0.97000 * 119.99872 * 359.97438 * 5 4 2 37 37 H 0.97004 * 119.99887 * 179.97438 * 13 12 10 38 38 H 1.07999 * 119.99861 * 359.97438 * 19 18 8 39 39 H 1.07999 * 119.99939 * 180.23124 * 20 19 18 40 40 H 1.07997 * 120.00185 * 179.83806 * 21 20 19 41 41 H 1.08002 * 119.99391 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.99793 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.29355 * 281.23211 * 25 24 2 44 44 H 1.08994 * 109.30147 * 40.60716 * 25 24 2 45 45 H 1.09002 * 109.80107 * 291.32145 * 26 25 24 46 46 H 1.08998 * 109.54482 * 170.75010 * 26 25 24 47 47 H 1.08995 * 109.67583 * 172.57477 * 27 26 25 48 48 H 1.09005 * 109.66904 * 52.04456 * 27 26 25 49 49 H 1.08997 * 109.39889 * 288.77170 * 28 27 26 50 50 H 1.08996 * 109.33400 * 168.98326 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1732 -1.4291 2.1907 7 8 3.5701 -1.8841 3.1394 8 6 5.6750 -1.5376 2.1300 9 1 6.1099 -0.5392 2.0842 10 6 6.0732 -2.3158 0.9024 11 1 5.4566 -3.1325 0.5572 12 6 7.2247 -1.9851 0.2200 13 7 8.0274 -1.0581 0.6952 14 14 7.6445 -2.8538 -1.3796 15 1 6.5618 -2.6203 -2.3686 16 1 8.9246 -2.3207 -1.9111 17 1 7.7814 -4.3113 -1.1302 18 6 6.1774 -2.2479 3.3605 19 6 5.8605 -3.5772 3.5691 20 6 6.3245 -4.2297 4.6959 21 6 7.0988 -3.5509 5.6182 22 6 7.4113 -2.2201 5.4121 23 6 6.9504 -1.5687 4.2835 24 7 2.0183 -0.6905 -1.1962 25 6 2.8482 0.0621 -2.1285 26 6 3.6412 -0.8915 -3.0262 27 6 2.6684 -1.9062 -3.6390 28 6 2.1401 -2.8068 -2.5197 29 6 1.6714 -1.9669 -1.3664 30 8 0.9376 -2.4765 -0.5461 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.7517 -0.1583 2.1370 35 1 1.6054 -1.7197 1.2952 36 1 3.9824 -0.4627 0.4315 37 1 8.8377 -0.8256 0.2153 38 1 5.2524 -4.1065 2.8505 39 1 6.0800 -5.2693 4.8570 40 1 7.4591 -4.0600 6.4998 41 1 8.0159 -1.6896 6.1329 42 1 7.1943 -0.5289 4.1227 43 1 2.2121 0.6974 -2.7449 44 1 3.5427 0.6880 -1.5683 45 1 4.3924 -1.4158 -2.4355 46 1 4.1272 -0.3250 -3.8205 47 1 3.1885 -2.5108 -4.3818 48 1 1.8378 -1.3801 -4.1096 49 1 2.9360 -3.4714 -2.1837 50 1 1.3077 -3.4007 -2.8970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362677593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:51 Heat of formation + Delta-G solvation = -75.032826 kcal Electronic energy + Delta-G solvation = -31827.949483 eV Core-core repulsion = 27818.586425 eV Total energy + Delta-G solvation = -4009.363058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.86039 -40.72912 -39.32559 -37.47533 -36.83533 -35.52722 -34.39245 -32.89328 -31.81752 -31.56040 -30.41882 -29.33786 -27.15126 -25.57756 -25.29237 -24.20944 -23.23874 -22.47656 -22.03580 -20.90728 -19.34943 -18.68004 -18.02123 -17.91454 -17.59116 -17.15772 -16.65602 -16.46460 -16.15301 -15.98587 -15.61303 -15.45121 -15.16467 -14.97062 -14.77209 -14.58335 -14.21351 -14.11082 -14.00147 -13.92361 -13.68838 -13.43837 -13.26175 -13.09931 -12.92634 -12.84736 -12.74416 -12.54987 -12.47678 -12.20663 -11.97186 -11.84407 -11.75782 -11.70452 -11.68664 -11.30776 -10.68177 -10.46599 -10.45912 -9.84669 -9.64405 -9.58296 -9.27470 -8.20303 -6.32599 0.73324 0.78418 1.40872 1.44982 1.51560 1.67998 1.92724 2.04014 2.42924 2.55019 3.07537 3.25385 3.55526 3.81151 3.88107 3.94076 3.94349 4.14685 4.19506 4.26651 4.27724 4.37678 4.44714 4.49760 4.53544 4.54090 4.60351 4.66943 4.76120 4.84559 4.89042 4.90718 4.94502 4.95490 4.98368 5.06817 5.07933 5.15207 5.30999 5.35214 5.39774 5.42127 5.60198 5.63557 5.69350 5.75955 5.80973 5.94121 6.22263 6.38678 6.54672 6.69005 6.78443 7.24204 7.33906 7.54656 8.87315 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.004543 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.051439 B = 6161.729538 C = 7690.596916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.120 0.880 4 C 0.105 3.895 5 N -0.710 5.710 6 C 0.521 3.479 7 O -0.599 6.599 8 C 0.057 3.943 9 H 0.069 0.931 10 C -0.514 4.514 11 H 0.042 0.958 12 C 0.040 3.960 13 N -0.901 5.901 14 Si 0.946 3.054 15 H -0.245 1.245 16 H -0.282 1.282 17 H -0.288 1.288 18 C -0.037 4.037 19 C -0.113 4.113 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.128 4.128 23 C -0.140 4.140 24 N -0.595 5.595 25 C 0.108 3.892 26 C -0.144 4.144 27 C -0.111 4.111 28 C -0.138 4.138 29 C 0.512 3.488 30 O -0.590 6.590 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.406 0.594 37 H 0.268 0.732 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.109 0.891 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 5.416 -8.923 12.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.138 0.862 4 C -0.020 4.020 5 N -0.361 5.361 6 C 0.310 3.690 7 O -0.481 6.481 8 C 0.036 3.964 9 H 0.087 0.913 10 C -0.552 4.552 11 H 0.060 0.940 12 C -0.163 4.163 13 N -0.538 5.538 14 Si 0.771 3.229 15 H -0.168 1.168 16 H -0.207 1.207 17 H -0.215 1.215 18 C -0.038 4.038 19 C -0.132 4.132 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.146 4.146 23 C -0.159 4.159 24 N -0.327 5.327 25 C -0.014 4.014 26 C -0.181 4.181 27 C -0.149 4.149 28 C -0.177 4.177 29 C 0.302 3.698 30 O -0.471 6.471 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.241 0.759 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.151 0.849 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.128 0.872 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.127 0.873 47 H 0.105 0.895 48 H 0.107 0.893 49 H 0.101 0.899 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.210 4.976 -7.929 12.451 hybrid contribution 0.709 -0.574 -0.869 1.260 sum -7.501 4.402 -8.798 12.371 Atomic orbital electron populations 1.22063 0.92878 1.03358 1.03258 1.21399 0.96109 0.96537 0.82609 0.86212 1.21746 0.80384 1.01385 0.98460 1.45682 1.06910 1.59845 1.23666 1.21560 0.91556 0.75103 0.80770 1.90547 1.71836 1.50073 1.35621 1.17975 0.86848 0.98594 0.93011 0.91338 1.20557 1.08917 1.16771 1.08947 0.93985 1.25537 0.95208 0.95257 1.00252 1.70008 1.12527 1.31571 1.39672 0.85808 0.78414 0.78189 0.80527 1.16849 1.20732 1.21453 1.20145 0.95092 0.94394 0.94173 1.20807 0.99870 0.94941 0.97565 1.21305 0.99153 1.00365 0.94624 1.21269 0.99932 0.94804 1.00097 1.21322 1.00429 0.95488 0.97349 1.21138 0.99835 0.99840 0.95042 1.47474 1.50754 1.11097 1.23390 1.21767 0.93739 0.94227 0.91655 1.22002 0.98040 0.98165 0.99929 1.21617 0.99679 0.97149 0.96441 1.21709 1.03059 0.98620 0.94340 1.20552 0.79593 0.82242 0.87381 1.90624 1.39021 1.71525 1.45966 0.90487 0.92428 0.90492 0.91734 0.93075 0.75883 0.92275 0.89525 0.84936 0.83420 0.83983 0.87231 0.88496 0.90039 0.93129 0.87309 0.89455 0.89312 0.89888 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.08 71.98 0.65 -2.91 16 2 C 0.14 3.42 2.76 44.99 0.12 3.54 16 3 H 0.12 2.28 7.79 -2.39 -0.02 2.26 16 4 C 0.10 3.69 4.86 86.38 0.42 4.11 16 5 N -0.71 -28.19 5.29 -463.06 -2.45 -30.64 16 6 C 0.52 25.32 7.04 87.66 0.62 25.94 16 7 O -0.60 -32.51 15.41 -3.03 -0.05 -32.56 16 8 C 0.06 2.87 2.38 -13.03 -0.03 2.84 16 9 H 0.07 3.63 7.13 -2.39 -0.02 3.61 16 10 C -0.51 -26.54 7.47 25.60 0.19 -26.35 16 11 H 0.04 2.27 7.82 -2.91 -0.02 2.25 16 12 C 0.04 2.00 5.45 84.65 0.46 2.46 16 13 N -0.90 -47.20 12.84 21.45 0.28 -46.93 16 14 Si 0.95 39.31 29.54 68.60 2.03 41.33 16 15 H -0.24 -9.04 7.11 99.48 0.71 -8.34 16 16 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 18 C -0.04 -1.86 4.30 -19.87 -0.09 -1.94 16 19 C -0.11 -5.52 8.31 22.27 0.18 -5.34 16 20 C -0.14 -5.53 10.05 22.27 0.22 -5.31 16 21 C -0.14 -5.16 10.05 22.27 0.22 -4.94 16 22 C -0.13 -4.87 10.05 22.27 0.22 -4.65 16 23 C -0.14 -6.37 9.67 22.27 0.22 -6.16 16 24 N -0.60 -14.69 2.24 -802.27 -1.80 -16.49 16 25 C 0.11 1.90 6.07 86.55 0.53 2.43 16 26 C -0.14 -2.67 6.03 30.74 0.19 -2.49 16 27 C -0.11 -1.87 6.03 30.73 0.19 -1.69 16 28 C -0.14 -3.32 6.03 29.71 0.18 -3.14 16 29 C 0.51 15.46 6.88 87.72 0.60 16.07 16 30 O -0.59 -22.61 12.52 -3.04 -0.04 -22.65 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.70 5.84 -2.39 -0.01 1.68 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.05 2.21 6.14 -2.39 -0.01 2.19 16 36 H 0.41 14.93 7.65 -92.71 -0.71 14.22 16 37 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 38 H 0.09 4.47 7.90 -2.91 -0.02 4.45 16 39 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 40 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 41 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.11 4.85 7.96 -2.91 -0.02 4.82 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.08 1.41 7.84 -2.39 -0.02 1.39 16 45 H 0.05 1.31 8.12 -2.39 -0.02 1.30 16 46 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.09 1.15 8.12 -2.38 -0.02 1.13 16 49 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -71.65 401.58 3.30 -68.36 By element: Atomic # 1 Polarization: 46.88 SS G_CDS: 0.22 Total: 47.11 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 5.10 Total: -7.53 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -3.97 Total: -94.06 kcal Atomic # 8 Polarization: -55.12 SS G_CDS: -0.08 Total: -55.21 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.33 kcal Total: -71.65 3.30 -68.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362677593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.676 kcal (2) G-P(sol) polarization free energy of solvation -71.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds