Wall clock time and date at job start Wed Apr 1 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47347 * 2 1 4 4 C 1.53005 * 109.46893 * 120.00599 * 2 1 3 5 5 N 1.46497 * 109.47003 * 175.00042 * 4 2 1 6 6 C 1.34777 * 120.00372 * 179.97438 * 5 4 2 7 7 O 1.21288 * 119.99422 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00491 * 179.97438 * 6 5 4 9 9 H 1.09006 * 115.55452 * 34.32529 * 8 6 5 10 10 C 1.53007 * 117.51845 * 248.62781 * 8 6 5 11 11 C 1.52995 * 117.49938 * 180.02562 * 8 6 5 12 12 C 1.53000 * 138.58573 * 238.40075 * 11 8 6 13 13 C 1.53001 * 60.02656 * 130.88194 * 12 11 8 14 14 N 1.46908 * 109.47125 * 239.99831 * 2 1 3 15 15 C 1.46902 * 110.99322 * 85.00255 * 14 2 1 16 16 C 1.50707 * 109.46800 * 179.97438 * 15 14 2 17 17 C 1.38299 * 119.93137 * 269.72749 * 16 15 14 18 18 C 1.38104 * 120.06664 * 179.72110 * 17 16 15 19 19 C 1.38877 * 119.93057 * 0.55432 * 18 17 16 20 20 O 1.35753 * 120.07076 * 179.74507 * 19 18 17 21 21 C 1.34823 * 116.99881 * 174.43890 * 20 19 18 22 22 H 1.08000 * 120.00604 * 5.05656 * 21 20 19 23 23 C 1.38656 * 119.99981 * 185.05812 * 21 20 19 24 24 N 1.31561 * 119.99751 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00419 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46927 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47085 * 119.99620 * 25 23 21 28 28 H 1.48498 * 109.47029 * 239.99848 * 25 23 21 29 29 C 1.38887 * 119.86221 * 359.71750 * 19 18 17 30 30 C 1.38102 * 119.93043 * 0.02562 * 29 19 18 31 31 H 1.09002 * 109.46910 * 59.99911 * 1 2 3 32 32 H 1.09004 * 109.47438 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47379 * 300.00147 * 1 2 3 34 34 H 1.08997 * 109.47398 * 54.99631 * 4 2 1 35 35 H 1.09008 * 109.46596 * 294.99348 * 4 2 1 36 36 H 0.97010 * 120.00436 * 359.97438 * 5 4 2 37 37 H 1.09003 * 117.50207 * 145.02800 * 10 8 6 38 38 H 1.09001 * 117.49857 * 0.02562 * 10 8 6 39 39 H 1.08993 * 117.49563 * 238.38116 * 12 11 8 40 40 H 1.08997 * 117.49703 * 23.38724 * 12 11 8 41 41 H 1.09001 * 117.50029 * 107.50400 * 13 12 11 42 42 H 1.09002 * 117.50422 * 252.52137 * 13 12 11 43 43 H 1.00902 * 110.99790 * 321.05273 * 14 2 1 44 44 H 1.08996 * 109.47454 * 299.99668 * 15 14 2 45 45 H 1.08999 * 109.47176 * 60.00531 * 15 14 2 46 46 H 1.07993 * 119.96663 * 0.02562 * 17 16 15 47 47 H 1.08001 * 120.03533 * 180.27202 * 18 17 16 48 48 H 0.97000 * 120.00288 * 180.02562 * 24 23 21 49 49 H 1.07994 * 120.03155 * 179.97438 * 29 19 18 50 50 H 1.07996 * 119.96418 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.4999 -0.8265 1.1906 6 6 4.1730 -1.4285 2.1911 7 8 3.5699 -1.8828 3.1403 8 6 5.6748 -1.5372 2.1305 9 1 6.1882 -0.6994 1.6585 10 6 6.2756 -2.9315 1.9405 11 6 6.3804 -2.2321 3.2967 12 6 7.4493 -1.9147 4.3444 13 6 6.1224 -2.5447 4.7726 14 7 2.0196 -0.6926 -1.1995 15 6 2.0824 0.2226 -2.3469 16 6 2.5885 -0.5215 -3.5558 17 6 3.9453 -0.5676 -3.8197 18 6 4.4126 -1.2535 -4.9235 19 6 3.5175 -1.8876 -5.7753 20 8 3.9734 -2.5583 -6.8640 21 6 3.0645 -3.2467 -7.5836 22 1 2.0159 -3.1817 -7.3333 23 6 3.4761 -4.0383 -8.6450 24 7 4.7534 -4.1171 -8.9502 25 14 2.2169 -4.9916 -9.6425 26 1 0.8585 -4.7343 -9.1005 27 1 2.2755 -4.5549 -11.0607 28 1 2.5159 -6.4438 -9.5589 29 6 2.1551 -1.8347 -5.5106 30 6 1.6945 -1.1516 -4.4022 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.6052 -1.7199 1.2951 35 1 1.7516 -0.1584 2.1370 36 1 3.9824 -0.4629 0.4316 37 1 7.1842 -3.0110 1.3435 38 1 5.5845 -3.7704 1.8588 39 1 8.3366 -2.5473 4.3655 40 1 7.6128 -0.8667 4.5950 41 1 6.1368 -3.5917 5.0756 42 1 5.4128 -1.9110 5.3047 43 1 1.4494 -1.4979 -1.4101 44 1 1.0871 0.6164 -2.5525 45 1 2.7589 1.0462 -2.1182 46 1 4.6405 -0.0709 -3.1591 47 1 5.4726 -1.2929 -5.1266 48 1 5.0413 -4.6705 -9.6930 49 1 1.4567 -2.3265 -6.1714 50 1 0.6352 -1.1098 -4.1962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001390483154.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:22 Heat of formation + Delta-G solvation = -3.653013 kcal Electronic energy + Delta-G solvation = -28679.261430 eV Core-core repulsion = 24672.993633 eV Total energy + Delta-G solvation = -4006.267797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.98566 -40.74659 -39.09271 -38.42712 -37.62652 -35.11159 -34.28792 -33.56532 -32.51734 -31.72991 -29.77128 -27.73120 -27.43936 -25.35210 -24.37432 -23.57481 -23.27337 -21.99125 -21.89448 -21.35571 -20.01700 -19.80900 -18.84128 -18.01633 -17.27368 -16.78992 -16.48863 -16.38480 -16.16085 -15.95560 -15.85066 -15.55120 -15.46247 -15.28054 -15.13167 -15.00217 -14.35991 -14.09979 -13.99183 -13.72274 -13.58191 -13.50150 -13.36871 -12.98245 -12.83835 -12.74206 -12.61992 -12.35693 -12.34147 -12.25409 -12.11814 -12.00118 -11.72939 -11.17299 -11.14452 -11.07652 -10.92520 -10.79404 -10.70194 -9.96182 -9.72738 -9.32385 -8.86033 -8.46756 -6.14417 0.65468 0.72343 1.34513 1.42712 1.52484 1.53341 2.16427 2.17457 2.77352 2.80370 2.91435 3.11431 3.35891 3.46262 3.56714 3.84459 3.89084 3.89596 4.05346 4.10510 4.14471 4.21066 4.26558 4.38411 4.50547 4.54146 4.63062 4.65819 4.67367 4.74794 4.75915 4.78298 4.82680 4.83606 4.84983 4.96354 5.01731 5.02791 5.05157 5.14383 5.18120 5.27475 5.28095 5.36150 5.55708 5.62529 5.75600 5.85915 6.04867 6.12619 6.30275 6.45861 6.68591 6.98455 7.34261 7.80850 8.76787 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011186 B = 0.002067 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.466909 B =13543.225478 C =15144.078261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.080 3.920 3 H 0.099 0.901 4 C 0.134 3.866 5 N -0.700 5.700 6 C 0.532 3.468 7 O -0.586 6.586 8 C -0.142 4.142 9 H 0.147 0.853 10 C -0.097 4.097 11 C -0.227 4.227 12 C -0.108 4.108 13 C -0.130 4.130 14 N -0.685 5.685 15 C 0.124 3.876 16 C -0.155 4.155 17 C -0.044 4.044 18 C -0.207 4.207 19 C 0.111 3.889 20 O -0.235 6.235 21 C -0.410 4.410 22 H 0.100 0.900 23 C -0.025 4.025 24 N -0.921 5.921 25 Si 1.018 2.982 26 H -0.252 1.252 27 H -0.268 1.268 28 H -0.269 1.269 29 C -0.246 4.246 30 C -0.064 4.064 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.417 0.583 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.343 0.657 44 H 0.046 0.954 45 H 0.092 0.908 46 H 0.150 0.850 47 H 0.110 0.890 48 H 0.272 0.728 49 H 0.113 0.887 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 10.035 23.331 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.030 4.030 3 H 0.117 0.883 4 C 0.010 3.990 5 N -0.351 5.351 6 C 0.319 3.681 7 O -0.467 6.467 8 C -0.163 4.163 9 H 0.164 0.836 10 C -0.134 4.134 11 C -0.227 4.227 12 C -0.144 4.144 13 C -0.167 4.167 14 N -0.316 5.316 15 C -0.004 4.004 16 C -0.156 4.156 17 C -0.063 4.063 18 C -0.226 4.226 19 C 0.061 3.939 20 O -0.142 6.142 21 C -0.487 4.487 22 H 0.118 0.882 23 C -0.222 4.222 24 N -0.559 5.559 25 Si 0.837 3.163 26 H -0.175 1.175 27 H -0.193 1.193 28 H -0.194 1.194 29 C -0.265 4.265 30 C -0.082 4.082 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.254 0.746 37 H 0.144 0.856 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.161 0.839 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.168 0.832 47 H 0.128 0.872 48 H 0.081 0.919 49 H 0.131 0.869 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.378 9.715 23.913 25.920 hybrid contribution -1.199 -0.587 -1.546 2.043 sum -3.577 9.128 22.367 24.421 Atomic orbital electron populations 1.22381 0.95308 1.02653 1.03301 1.21757 0.93954 0.98371 0.88912 0.88316 1.21342 0.79920 1.00149 0.97616 1.45713 1.07803 1.58576 1.22982 1.20101 0.89174 0.76913 0.81865 1.90658 1.70951 1.49780 1.35301 1.22030 0.90807 0.99999 1.03456 0.83556 1.22685 1.02323 0.92607 0.95778 1.21422 1.06710 1.06320 0.88266 1.22856 0.92374 1.02449 0.96753 1.22604 0.99431 1.01759 0.92868 1.60588 1.57801 1.09724 1.03494 1.20665 0.99858 0.93667 0.86252 1.19639 0.92918 1.04370 0.98643 1.20879 0.95738 0.95572 0.94071 1.20500 0.98437 1.05768 0.97898 1.19996 0.93863 0.92462 0.87589 1.83939 1.37867 1.58001 1.34353 1.21823 0.89727 1.25390 1.11734 0.88245 1.26573 0.99502 0.97959 0.98175 1.70189 1.16657 1.39690 1.29413 0.84541 0.77023 0.77341 0.77380 1.17540 1.19329 1.19426 1.21219 0.94482 1.08296 1.02531 1.20955 0.99899 0.94763 0.92630 0.91577 0.92497 0.90880 0.93369 0.91424 0.74631 0.85554 0.89574 0.86740 0.87506 0.88392 0.89647 0.83896 0.93588 0.89007 0.83210 0.87184 0.91897 0.86922 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 9.16 71.98 0.66 -1.28 16 2 C 0.08 1.00 2.75 44.91 0.12 1.12 16 3 H 0.10 1.01 7.80 -2.39 -0.02 0.99 16 4 C 0.13 2.24 5.37 86.38 0.46 2.71 16 5 N -0.70 -12.49 5.39 -463.05 -2.49 -14.99 16 6 C 0.53 12.16 7.61 87.65 0.67 12.83 16 7 O -0.59 -17.98 16.25 -3.06 -0.05 -18.03 16 8 C -0.14 -2.57 6.19 -11.54 -0.07 -2.64 16 9 H 0.15 1.87 8.14 -2.38 -0.02 1.85 16 10 C -0.10 -1.72 10.23 30.58 0.31 -1.40 16 11 C -0.23 -4.21 5.05 -52.18 -0.26 -4.47 16 12 C -0.11 -1.46 10.53 30.59 0.32 -1.14 16 13 C -0.13 -2.39 10.17 30.62 0.31 -2.08 16 14 N -0.68 -11.04 5.68 -495.55 -2.81 -13.86 16 15 C 0.12 2.14 5.61 85.56 0.48 2.62 16 16 C -0.15 -4.16 5.40 -19.83 -0.11 -4.26 16 17 C -0.04 -1.33 9.69 22.25 0.22 -1.12 16 18 C -0.21 -8.44 9.99 22.39 0.22 -8.22 16 19 C 0.11 5.43 6.65 22.58 0.15 5.58 16 20 O -0.23 -14.09 9.76 -22.70 -0.22 -14.32 16 21 C -0.41 -23.89 9.49 67.92 0.64 -23.25 16 22 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 23 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 24 N -0.92 -56.61 13.67 21.61 0.30 -56.31 16 25 Si 1.02 42.92 29.55 68.60 2.03 44.94 16 26 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 29 C -0.25 -10.39 9.17 22.39 0.21 -10.18 16 30 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 31 H 0.07 0.70 7.45 -2.39 -0.02 0.69 16 32 H 0.06 0.70 8.13 -2.38 -0.02 0.68 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.42 6.12 8.14 -92.70 -0.75 5.36 16 37 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.34 6.27 8.46 -89.69 -0.76 5.51 16 44 H 0.05 0.71 7.38 -2.39 -0.02 0.70 16 45 H 0.09 1.32 7.99 -2.39 -0.02 1.30 16 46 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 47 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 48 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 49 H 0.11 4.94 5.64 -2.91 -0.02 4.92 16 50 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -76.20 419.96 1.21 -74.99 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.55 Total: 35.52 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 5.02 Total: -37.95 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -5.01 Total: -85.15 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.27 Total: -32.35 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -76.20 1.21 -74.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390483154.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.334 kcal (2) G-P(sol) polarization free energy of solvation -76.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds