Wall clock time and date at job start Wed Apr 1 2020 04:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.46934 * 2 1 4 4 C 1.46496 * 120.00511 * 277.45882 * 3 2 1 5 5 C 1.50696 * 109.47156 * 275.00359 * 4 3 2 6 6 H 1.07996 * 120.00191 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99907 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00124 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99774 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47243 * 59.99846 * 9 7 5 11 11 H 1.48501 * 109.46620 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47155 * 299.99568 * 9 7 5 13 13 S 1.65606 * 119.99704 * 97.45974 * 3 2 1 14 14 O 1.42108 * 106.40157 * 148.86239 * 13 3 2 15 15 O 1.42092 * 106.40191 * 15.93947 * 13 3 2 16 16 N 1.65598 * 107.21740 * 262.39779 * 13 3 2 17 17 C 1.47209 * 120.81648 * 268.73845 * 16 13 3 18 18 C 1.53192 * 108.85174 * 126.33823 * 17 16 13 19 19 C 1.53045 * 109.31370 * 54.65460 * 18 17 16 20 20 C 1.53038 * 109.53636 * 298.62981 * 19 18 17 21 21 H 1.09005 * 109.52839 * 301.40559 * 20 19 18 22 22 C 1.52994 * 109.49943 * 181.31704 * 20 19 18 23 23 C 1.54268 * 110.03626 * 178.07448 * 22 20 19 24 24 C 1.54970 * 104.15797 * 217.13672 * 23 22 20 25 25 C 1.54896 * 102.77804 * 37.88667 * 24 23 22 26 26 C 1.53876 * 110.03181 * 60.85468 * 22 20 19 27 27 C 1.46932 * 120.63008 * 88.59725 * 16 13 3 28 28 H 1.09003 * 109.47461 * 52.44978 * 1 2 3 29 29 H 1.09004 * 109.46865 * 172.44349 * 1 2 3 30 30 H 1.09001 * 109.47455 * 292.43896 * 1 2 3 31 31 H 1.09004 * 109.46722 * 240.00515 * 2 1 3 32 32 H 1.09003 * 109.47063 * 120.00307 * 2 1 3 33 33 H 1.09010 * 109.46710 * 34.99952 * 4 3 2 34 34 H 1.09003 * 109.47589 * 154.99975 * 4 3 2 35 35 H 0.97000 * 120.00145 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.53337 * 6.53514 * 17 16 13 37 37 H 1.09004 * 109.67789 * 246.22886 * 17 16 13 38 38 H 1.08996 * 109.49945 * 294.70064 * 18 17 16 39 39 H 1.09001 * 109.52345 * 174.61860 * 18 17 16 40 40 H 1.08998 * 109.45894 * 178.61177 * 19 18 17 41 41 H 1.08992 * 109.44661 * 58.64740 * 19 18 17 42 42 H 1.09003 * 110.01426 * 299.46677 * 22 20 19 43 43 H 1.09005 * 110.47830 * 335.78036 * 23 22 20 44 44 H 1.08996 * 110.48778 * 98.42696 * 23 22 20 45 45 H 1.08995 * 110.71929 * 279.56892 * 24 23 22 46 46 H 1.09001 * 110.91767 * 156.29378 * 24 23 22 47 47 H 1.08992 * 110.48301 * 203.40580 * 25 24 23 48 48 H 1.09001 * 110.59591 * 80.81305 * 25 24 23 49 49 H 1.09001 * 110.03247 * 238.57248 * 26 22 20 50 50 H 1.09002 * 110.02882 * 359.95145 * 26 22 20 51 51 H 1.08993 * 109.58662 * 113.81826 * 27 16 13 52 52 H 1.09000 * 109.58073 * 353.53873 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1072 2.1268 -1.2579 5 6 3.4175 1.8162 -1.9344 6 1 4.1145 1.1322 -1.4733 7 6 3.7264 2.4053 -3.1421 8 7 2.8774 3.2379 -3.7040 9 14 5.3503 2.0197 -3.9810 10 1 5.4291 0.5636 -4.2616 11 1 5.4399 2.7747 -5.2567 12 1 6.4726 2.4140 -3.0921 13 16 2.4698 2.0997 1.4221 14 8 3.5036 3.0189 1.0967 15 8 2.6310 1.0515 2.3678 16 7 1.1853 3.0059 1.9428 17 6 1.0563 4.4214 1.5595 18 6 -0.3230 4.6399 0.9297 19 6 -1.4041 4.1508 1.8963 20 6 -1.2220 2.6531 2.1525 21 1 -1.2801 2.1122 1.2079 22 6 -2.3226 2.1583 3.0929 23 6 -2.1793 0.6394 3.3214 24 6 -3.6401 0.1259 3.3836 25 6 -4.3517 0.9863 2.3099 26 6 -3.7034 2.3789 2.4505 27 6 0.1471 2.4120 2.7962 28 1 -0.3634 0.6263 -0.8148 29 1 -0.3633 -1.0188 -0.1351 30 1 -0.3634 0.3923 0.9498 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.2836 1.8373 -1.9108 34 1 2.0491 3.1955 -1.0518 35 1 3.0946 3.6521 -4.5538 36 1 1.8322 4.6756 0.8374 37 1 1.1586 5.0517 2.4429 38 1 -0.3895 4.0808 -0.0036 39 1 -0.4677 5.7014 0.7289 40 1 -2.3875 4.3278 1.4608 41 1 -1.3210 4.6931 2.8381 42 1 -2.2651 2.6862 4.0449 43 1 -1.6477 0.1771 2.4896 44 1 -1.6643 0.4419 4.2615 45 1 -4.0701 0.3047 4.3691 46 1 -3.6920 -0.9323 3.1273 47 1 -5.4212 1.0411 2.5125 48 1 -4.1732 0.5812 1.3138 49 1 -4.3162 3.0131 3.0911 50 1 -3.5892 2.8393 1.4691 51 1 0.1744 2.8765 3.7818 52 1 0.3221 1.3404 2.8923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414379259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:29 Heat of formation + Delta-G solvation = -104.967690 kcal Electronic energy + Delta-G solvation = -31414.866965 eV Core-core repulsion = 27539.649785 eV Total energy + Delta-G solvation = -3875.217180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.57557 -37.12711 -36.66631 -35.98945 -35.12746 -32.65400 -32.56256 -31.57725 -29.93372 -28.82724 -27.38604 -26.59047 -24.32906 -23.17346 -22.87213 -21.75675 -20.69090 -20.28631 -19.48039 -18.25700 -17.42967 -16.70725 -16.32774 -16.07123 -15.65895 -15.22226 -14.77291 -14.51424 -14.27659 -14.03747 -13.69879 -13.62109 -13.50586 -13.22078 -13.10275 -12.91579 -12.72124 -12.10384 -12.02383 -11.77038 -11.69010 -11.58258 -11.43938 -11.34509 -11.25122 -11.20797 -11.08733 -11.01174 -10.98433 -10.91285 -10.84675 -10.69565 -10.51675 -10.44464 -10.32806 -10.14653 -10.12978 -9.95571 -9.72473 -8.72817 -8.41892 -8.02308 -6.04888 -4.08114 1.24375 3.34839 3.38075 3.43015 3.49521 4.11834 4.40532 4.46351 4.50734 4.52276 4.83346 4.91242 4.95696 5.09563 5.21470 5.25640 5.30496 5.31326 5.37052 5.47769 5.51603 5.53556 5.54980 5.59540 5.64004 5.66638 5.74571 5.76751 5.78736 5.81788 5.85953 5.91524 5.97321 6.01872 6.05783 6.10580 6.13091 6.21015 6.25683 6.30091 6.38107 6.46094 6.51862 6.64186 6.66723 6.87249 7.25058 7.44501 7.65870 7.93353 8.23220 8.94053 9.56844 11.03467 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.003778 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.060040 B = 7409.222863 C = 7538.721928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.118 3.882 3 N -0.991 5.991 4 C 0.262 3.738 5 C -0.526 4.526 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.777 3.223 14 O -0.964 6.964 15 O -0.999 6.999 16 N -1.010 6.010 17 C 0.123 3.877 18 C -0.135 4.135 19 C -0.109 4.109 20 C -0.099 4.099 21 H 0.083 0.917 22 C -0.085 4.085 23 C -0.127 4.127 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.120 4.120 27 C 0.130 3.870 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.068 0.932 51 H 0.063 0.937 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.201 -1.452 12.982 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.009 4.009 3 N -0.832 5.832 4 C 0.140 3.860 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.787 3.213 14 O -0.947 6.947 15 O -0.983 6.983 16 N -0.847 5.847 17 C -0.003 4.003 18 C -0.174 4.174 19 C -0.147 4.147 20 C -0.119 4.119 21 H 0.101 0.899 22 C -0.104 4.104 23 C -0.164 4.164 24 C -0.162 4.162 25 C -0.163 4.163 26 C -0.158 4.158 27 C 0.004 3.996 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.087 0.913 51 H 0.081 0.919 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.342 -1.402 13.253 19.578 hybrid contribution 0.451 -0.037 -0.827 0.943 sum -13.891 -1.438 12.426 18.693 Atomic orbital electron populations 1.22348 0.97322 1.01603 1.01906 1.21121 0.93177 0.83299 1.03280 1.57773 1.80685 1.21168 1.23588 1.18954 0.97425 0.90374 0.79237 1.21466 1.03111 1.27009 1.04968 0.92285 1.24907 0.97097 0.94872 0.97042 1.69906 1.35744 1.29731 1.18234 0.86605 0.84182 0.78365 0.78591 1.20228 1.21222 1.20007 1.02079 0.73549 0.72860 0.72819 1.93621 1.52680 1.64326 1.84096 1.93499 1.85847 1.56922 1.62039 1.58485 1.41813 1.20788 1.63663 1.21412 0.98249 0.80806 0.99811 1.21907 0.94616 1.01441 0.99435 1.21542 0.98632 0.95065 0.99413 1.21734 0.93791 0.96899 0.99509 0.89896 1.21776 0.94190 0.95932 0.98472 1.22560 0.96718 0.95091 1.02048 1.22489 0.95673 0.99188 0.98832 1.22358 0.99049 0.95590 0.99294 1.22233 0.95432 0.97048 1.01051 1.21346 0.86674 0.98487 0.93103 0.91895 0.92336 0.93052 0.89996 0.90621 0.94807 0.94997 0.92719 0.88863 0.91841 0.90865 0.91073 0.91785 0.92221 0.91098 0.90956 0.91611 0.91862 0.91795 0.92165 0.91623 0.92193 0.91302 0.91864 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.11 37.16 0.38 -2.06 16 2 C 0.12 2.06 6.39 -4.04 -0.03 2.03 16 3 N -0.99 -20.41 2.83 -115.66 -0.33 -20.73 16 4 C 0.26 6.42 5.09 -5.20 -0.03 6.39 16 5 C -0.53 -14.67 9.38 -34.44 -0.32 -15.00 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 S 2.78 56.45 6.02 -107.50 -0.65 55.80 16 14 O -0.96 -23.45 16.09 -57.17 -0.92 -24.37 16 15 O -1.00 -20.92 15.31 -57.17 -0.88 -21.80 16 16 N -1.01 -15.97 3.36 -113.30 -0.38 -16.35 16 17 C 0.12 1.79 6.40 -3.56 -0.02 1.77 16 18 C -0.14 -1.68 6.08 -26.61 -0.16 -1.84 16 19 C -0.11 -1.13 4.94 -26.69 -0.13 -1.26 16 20 C -0.10 -1.08 1.40 -90.50 -0.13 -1.21 16 21 H 0.08 1.00 6.56 -51.93 -0.34 0.66 16 22 C -0.08 -0.76 2.50 -89.50 -0.22 -0.99 16 23 C -0.13 -1.15 5.41 -25.03 -0.14 -1.28 16 24 C -0.12 -1.00 6.91 -24.69 -0.17 -1.17 16 25 C -0.13 -1.01 6.83 -25.07 -0.17 -1.18 16 26 C -0.12 -1.00 5.90 -25.61 -0.15 -1.16 16 27 C 0.13 1.67 5.00 -3.71 -0.02 1.65 16 28 H 0.06 0.95 7.84 -51.93 -0.41 0.54 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.66 4.20 -51.93 -0.22 0.44 16 31 H 0.08 1.48 8.13 -51.93 -0.42 1.05 16 32 H 0.08 1.27 6.82 -51.93 -0.35 0.92 16 33 H 0.03 0.84 7.81 -51.92 -0.41 0.44 16 34 H 0.03 0.82 7.82 -51.93 -0.41 0.42 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.09 1.58 7.11 -51.93 -0.37 1.22 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.61 6.49 -51.93 -0.34 0.27 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.72 6.28 -51.93 -0.33 0.39 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.07 0.61 6.39 -51.93 -0.33 0.28 16 51 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.08 1.13 6.03 -51.93 -0.31 0.81 16 LS Contribution 398.98 15.07 6.01 6.01 Total: -1.00 -31.90 398.98 -12.10 -44.00 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -9.27 Total: -0.69 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -1.41 Total: -13.63 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.03 Total: -62.16 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -1.80 Total: -46.17 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 56.45 SS G_CDS: -0.65 Total: 55.80 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.90 -12.10 -44.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414379259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.965 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds