Wall clock time and date at job start Wed Apr 1 2020 04:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.46934 * 2 1 4 4 C 1.46496 * 120.00511 * 277.45882 * 3 2 1 5 5 C 1.50696 * 109.47156 * 275.00359 * 4 3 2 6 6 H 1.07996 * 120.00191 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99907 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00124 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99774 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47243 * 59.99846 * 9 7 5 11 11 H 1.48501 * 109.46620 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47155 * 299.99568 * 9 7 5 13 13 S 1.65606 * 119.99704 * 97.45974 * 3 2 1 14 14 O 1.42108 * 106.40157 * 148.86239 * 13 3 2 15 15 O 1.42092 * 106.40191 * 15.93947 * 13 3 2 16 16 N 1.65598 * 107.21740 * 262.39779 * 13 3 2 17 17 C 1.47209 * 120.81648 * 268.73845 * 16 13 3 18 18 C 1.53192 * 108.85174 * 126.33823 * 17 16 13 19 19 C 1.53045 * 109.31370 * 54.65460 * 18 17 16 20 20 C 1.53038 * 109.53636 * 298.62981 * 19 18 17 21 21 H 1.09005 * 109.52839 * 301.40559 * 20 19 18 22 22 C 1.52994 * 109.49943 * 181.31704 * 20 19 18 23 23 C 1.54268 * 110.03626 * 178.07448 * 22 20 19 24 24 C 1.54970 * 104.15797 * 217.13672 * 23 22 20 25 25 C 1.54896 * 102.77804 * 37.88667 * 24 23 22 26 26 C 1.53876 * 110.03181 * 60.85468 * 22 20 19 27 27 C 1.46932 * 120.63008 * 88.59725 * 16 13 3 28 28 H 1.09003 * 109.47461 * 52.44978 * 1 2 3 29 29 H 1.09004 * 109.46865 * 172.44349 * 1 2 3 30 30 H 1.09001 * 109.47455 * 292.43896 * 1 2 3 31 31 H 1.09004 * 109.46722 * 240.00515 * 2 1 3 32 32 H 1.09003 * 109.47063 * 120.00307 * 2 1 3 33 33 H 1.09010 * 109.46710 * 34.99952 * 4 3 2 34 34 H 1.09003 * 109.47589 * 154.99975 * 4 3 2 35 35 H 0.97000 * 120.00145 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.53337 * 6.53514 * 17 16 13 37 37 H 1.09004 * 109.67789 * 246.22886 * 17 16 13 38 38 H 1.08996 * 109.49945 * 294.70064 * 18 17 16 39 39 H 1.09001 * 109.52345 * 174.61860 * 18 17 16 40 40 H 1.08998 * 109.45894 * 178.61177 * 19 18 17 41 41 H 1.08992 * 109.44661 * 58.64740 * 19 18 17 42 42 H 1.09003 * 110.01426 * 299.46677 * 22 20 19 43 43 H 1.09005 * 110.47830 * 335.78036 * 23 22 20 44 44 H 1.08996 * 110.48778 * 98.42696 * 23 22 20 45 45 H 1.08995 * 110.71929 * 279.56892 * 24 23 22 46 46 H 1.09001 * 110.91767 * 156.29378 * 24 23 22 47 47 H 1.08992 * 110.48301 * 203.40580 * 25 24 23 48 48 H 1.09001 * 110.59591 * 80.81305 * 25 24 23 49 49 H 1.09001 * 110.03247 * 238.57248 * 26 22 20 50 50 H 1.09002 * 110.02882 * 359.95145 * 26 22 20 51 51 H 1.08993 * 109.58662 * 113.81826 * 27 16 13 52 52 H 1.09000 * 109.58073 * 353.53873 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1072 2.1268 -1.2579 5 6 3.4175 1.8162 -1.9344 6 1 4.1145 1.1322 -1.4733 7 6 3.7264 2.4053 -3.1421 8 7 2.8774 3.2379 -3.7040 9 14 5.3503 2.0197 -3.9810 10 1 5.4291 0.5636 -4.2616 11 1 5.4399 2.7747 -5.2567 12 1 6.4726 2.4140 -3.0921 13 16 2.4698 2.0997 1.4221 14 8 3.5036 3.0189 1.0967 15 8 2.6310 1.0515 2.3678 16 7 1.1853 3.0059 1.9428 17 6 1.0563 4.4214 1.5595 18 6 -0.3230 4.6399 0.9297 19 6 -1.4041 4.1508 1.8963 20 6 -1.2220 2.6531 2.1525 21 1 -1.2801 2.1122 1.2079 22 6 -2.3226 2.1583 3.0929 23 6 -2.1793 0.6394 3.3214 24 6 -3.6401 0.1259 3.3836 25 6 -4.3517 0.9863 2.3099 26 6 -3.7034 2.3789 2.4505 27 6 0.1471 2.4120 2.7962 28 1 -0.3634 0.6263 -0.8148 29 1 -0.3633 -1.0188 -0.1351 30 1 -0.3634 0.3923 0.9498 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.2836 1.8373 -1.9108 34 1 2.0491 3.1955 -1.0518 35 1 3.0946 3.6521 -4.5538 36 1 1.8322 4.6756 0.8374 37 1 1.1586 5.0517 2.4429 38 1 -0.3895 4.0808 -0.0036 39 1 -0.4677 5.7014 0.7289 40 1 -2.3875 4.3278 1.4608 41 1 -1.3210 4.6931 2.8381 42 1 -2.2651 2.6862 4.0449 43 1 -1.6477 0.1771 2.4896 44 1 -1.6643 0.4419 4.2615 45 1 -4.0701 0.3047 4.3691 46 1 -3.6920 -0.9323 3.1273 47 1 -5.4212 1.0411 2.5125 48 1 -4.1732 0.5812 1.3138 49 1 -4.3162 3.0131 3.0911 50 1 -3.5892 2.8393 1.4691 51 1 0.1744 2.8765 3.7818 52 1 0.3221 1.3404 2.8923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414379259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:28 Heat of formation + Delta-G solvation = -123.879688 kcal Electronic energy + Delta-G solvation = -31415.687051 eV Core-core repulsion = 27539.649785 eV Total energy + Delta-G solvation = -3876.037266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.44617 -38.39575 -38.01186 -37.66245 -36.87414 -34.71221 -33.58383 -32.59210 -31.49649 -29.50418 -28.50798 -28.19951 -25.41792 -24.98873 -23.85029 -23.31424 -21.53880 -21.13029 -20.26126 -19.72914 -19.03027 -18.38005 -18.24427 -17.43653 -16.77288 -16.47884 -16.00997 -15.77792 -15.45263 -15.27829 -14.95590 -14.82641 -14.68875 -14.62886 -14.17251 -14.05018 -13.82808 -13.66583 -13.60299 -13.35403 -13.20707 -13.08672 -12.98488 -12.77345 -12.71184 -12.46737 -12.28008 -12.17777 -12.15952 -12.03945 -11.84239 -11.78238 -11.75819 -11.70980 -11.67461 -11.33799 -11.25478 -11.02358 -10.98970 -10.58714 -9.93552 -9.75502 -8.19929 -6.31007 -0.35226 1.37790 1.41114 1.48234 1.99241 2.39394 2.56371 3.10571 3.35379 3.61164 3.74879 3.81865 3.90801 3.99840 4.07008 4.13025 4.24822 4.33974 4.44531 4.44835 4.46573 4.60691 4.61156 4.66707 4.71633 4.80145 4.83187 4.85682 4.89440 4.95193 4.96503 5.00203 5.04925 5.10614 5.13365 5.16638 5.19491 5.25189 5.27469 5.30583 5.36740 5.43005 5.49812 5.52298 5.54637 5.59511 5.69416 5.72770 5.73274 6.00379 6.12910 6.76250 7.37263 8.87015 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.003778 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.060040 B = 7409.222863 C = 7538.721928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.110 3.890 3 N -0.996 5.996 4 C 0.282 3.718 5 C -0.549 4.549 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.279 1.279 13 S 2.786 3.214 14 O -1.011 7.011 15 O -1.007 7.007 16 N -1.002 6.002 17 C 0.117 3.883 18 C -0.131 4.131 19 C -0.103 4.103 20 C -0.094 4.094 21 H 0.068 0.932 22 C -0.078 4.078 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.118 4.118 27 C 0.122 3.878 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.013 0.987 35 H 0.267 0.733 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.063 0.937 51 H 0.085 0.915 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.984 -1.584 14.253 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.016 4.016 3 N -0.836 5.836 4 C 0.159 3.841 5 C -0.588 4.588 6 H 0.066 0.934 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.190 1.190 11 H -0.200 1.200 12 H -0.205 1.205 13 S 2.796 3.204 14 O -0.995 6.995 15 O -0.991 6.991 16 N -0.843 5.843 17 C -0.008 4.008 18 C -0.170 4.170 19 C -0.140 4.140 20 C -0.114 4.114 21 H 0.086 0.914 22 C -0.097 4.097 23 C -0.169 4.169 24 C -0.159 4.159 25 C -0.164 4.164 26 C -0.156 4.156 27 C -0.002 4.002 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.103 0.897 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.134 -1.565 14.530 21.768 hybrid contribution 0.976 0.003 -1.156 1.513 sum -15.158 -1.562 13.374 20.275 Atomic orbital electron populations 1.22249 0.94494 1.03160 1.02168 1.21346 0.95565 0.81589 1.03100 1.57671 1.81210 1.22359 1.22408 1.18461 0.95674 0.89644 0.80339 1.21801 1.04309 1.27062 1.05641 0.93415 1.25669 1.00293 0.94728 0.97673 1.69990 1.37212 1.30268 1.18618 0.85714 0.79974 0.78885 0.77784 1.18990 1.19966 1.20495 1.01537 0.73805 0.72446 0.72579 1.93553 1.55619 1.65529 1.84762 1.93474 1.86359 1.57374 1.61925 1.58134 1.41550 1.20935 1.63657 1.21572 0.98651 0.80188 1.00364 1.21881 0.94042 1.02300 0.98765 1.21529 0.98306 0.94594 0.99598 1.21681 0.93191 0.97336 0.99177 0.91381 1.21740 0.93684 0.95900 0.98415 1.22588 0.97392 0.95151 1.01733 1.22480 0.94891 0.99247 0.99272 1.22366 0.99674 0.95435 0.98911 1.22221 0.95093 0.97336 1.00915 1.21665 0.86656 0.98291 0.93624 0.93134 0.89620 0.91746 0.91044 0.89900 0.95654 0.96918 0.92402 0.92117 0.89163 0.93350 0.89332 0.90328 0.90470 0.89890 0.92110 0.91306 0.90976 0.91673 0.91208 0.92444 0.90986 0.91875 0.89724 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.47 10.11 71.98 0.73 -3.74 16 2 C 0.11 3.87 6.39 86.38 0.55 4.42 16 3 N -1.00 -42.36 2.83 -519.85 -1.47 -43.83 16 4 C 0.28 14.42 5.09 85.63 0.44 14.85 16 5 C -0.55 -31.58 9.38 25.60 0.24 -31.34 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.02 0.92 5.46 84.66 0.46 1.38 16 8 N -0.92 -53.95 13.29 21.45 0.28 -53.66 16 9 Si 0.95 45.20 29.54 68.60 2.03 47.22 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 13 S 2.79 116.07 6.02 -56.49 -0.34 115.73 16 14 O -1.01 -51.33 16.09 -128.00 -2.06 -53.39 16 15 O -1.01 -42.39 15.31 -128.00 -1.96 -44.35 16 16 N -1.00 -31.52 3.36 -512.38 -1.72 -33.24 16 17 C 0.12 3.41 6.40 86.31 0.55 3.96 16 18 C -0.13 -3.15 6.08 30.67 0.19 -2.97 16 19 C -0.10 -1.88 4.94 30.62 0.15 -1.73 16 20 C -0.09 -1.85 1.40 -10.72 -0.01 -1.87 16 21 H 0.07 1.57 6.56 -2.38 -0.02 1.56 16 22 C -0.08 -1.19 2.50 -10.07 -0.03 -1.22 16 23 C -0.13 -2.08 5.41 31.70 0.17 -1.91 16 24 C -0.12 -1.65 6.91 31.92 0.22 -1.43 16 25 C -0.13 -1.74 6.83 31.67 0.22 -1.53 16 26 C -0.12 -1.64 5.90 31.32 0.18 -1.46 16 27 C 0.12 2.95 5.00 86.36 0.43 3.38 16 28 H 0.05 1.52 7.84 -2.39 -0.02 1.50 16 29 H 0.09 1.89 8.14 -2.38 -0.02 1.88 16 30 H 0.06 1.60 4.20 -2.39 -0.01 1.59 16 31 H 0.07 2.64 8.13 -2.39 -0.02 2.62 16 32 H 0.08 2.79 6.82 -2.39 -0.02 2.77 16 33 H 0.03 1.32 7.81 -2.38 -0.02 1.30 16 34 H 0.01 0.70 7.82 -2.39 -0.02 0.68 16 35 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.06 2.17 7.11 -2.39 -0.02 2.16 16 37 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 1.26 6.49 -2.39 -0.02 1.24 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.10 6.28 -2.38 -0.01 1.08 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.06 0.96 6.39 -2.39 -0.02 0.95 16 51 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 52 H 0.08 2.01 6.03 -2.39 -0.01 2.00 16 Total: -1.00 -70.02 398.98 0.13 -69.89 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.88 Total: 16.81 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 4.49 Total: -21.18 kcal Atomic # 7 Polarization: -127.83 SS G_CDS: -2.91 Total: -130.73 kcal Atomic # 8 Polarization: -93.72 SS G_CDS: -4.02 Total: -97.74 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 116.07 SS G_CDS: -0.34 Total: 115.73 kcal Total: -70.02 0.13 -69.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414379259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.993 kcal (2) G-P(sol) polarization free energy of solvation -70.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds