Wall clock time and date at job start Wed Apr 1 2020 03:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 O 1.42899 * 109.47295 * 120.00838 * 2 1 3 5 5 C 1.35902 * 116.99746 * 276.50898 * 4 2 1 6 6 C 1.38734 * 120.05477 * 3.34616 * 5 4 2 7 7 C 1.38149 * 119.94387 * 179.74923 * 6 5 4 8 8 C 1.38264 * 120.05168 * 0.49881 * 7 6 5 9 9 C 1.38262 * 120.11433 * 359.77318 * 8 7 6 10 10 C 1.38139 * 120.05453 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.47117 * 240.00184 * 2 1 3 12 12 O 1.21277 * 120.00325 * 245.00510 * 11 2 1 13 13 N 1.34783 * 119.99747 * 64.99695 * 11 2 1 14 14 C 1.46501 * 120.00117 * 179.97438 * 13 11 2 15 15 H 1.09001 * 115.55041 * 350.69663 * 14 13 11 16 16 C 1.53029 * 117.52039 * 136.40674 * 14 13 11 17 17 C 1.52818 * 117.50529 * 204.99950 * 14 13 11 18 18 C 1.53186 * 117.70856 * 0.12512 * 17 14 13 19 19 C 1.53353 * 108.76189 * 201.11521 * 18 17 14 20 20 N 1.46851 * 108.80834 * 308.67781 * 19 18 17 21 21 C 1.36940 * 120.38356 * 236.87959 * 20 19 18 22 22 H 1.07999 * 119.99738 * 32.66527 * 21 20 19 23 23 C 1.38805 * 120.00119 * 212.66286 * 21 20 19 24 24 N 1.31615 * 120.00254 * 14.45728 * 23 21 20 25 25 Si 1.86804 * 119.99882 * 194.45808 * 23 21 20 26 26 H 1.48500 * 109.47043 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47143 * 120.00079 * 25 23 21 28 28 H 1.48497 * 109.47192 * 240.00171 * 25 23 21 29 29 C 1.46837 * 119.23447 * 56.90728 * 20 19 18 30 30 C 1.53179 * 117.70959 * 144.87026 * 17 14 13 31 31 H 1.08996 * 109.47339 * 59.99517 * 1 2 3 32 32 H 1.09000 * 109.46982 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46481 * 299.99640 * 1 2 3 34 34 H 1.07998 * 120.02986 * 359.97438 * 6 5 4 35 35 H 1.07996 * 119.97325 * 180.23750 * 7 6 5 36 36 H 1.08005 * 119.94099 * 179.75424 * 8 7 6 37 37 H 1.08002 * 119.97007 * 179.97438 * 9 8 7 38 38 H 1.08005 * 120.02841 * 179.97438 * 10 9 8 39 39 H 0.96999 * 119.99778 * 0.02562 * 13 11 2 40 40 H 1.08993 * 117.50846 * 0.02562 * 16 14 13 41 41 H 1.09000 * 117.50443 * 214.94104 * 16 14 13 42 42 H 1.08998 * 109.59230 * 81.32929 * 18 17 14 43 43 H 1.08997 * 109.58960 * 320.89312 * 18 17 14 44 44 H 1.09000 * 109.58460 * 68.47479 * 19 18 17 45 45 H 1.08998 * 109.57971 * 188.88139 * 19 18 17 46 46 H 0.97003 * 120.00067 * 180.02562 * 24 23 21 47 47 H 1.09006 * 109.58171 * 62.90066 * 29 20 19 48 48 H 1.09002 * 109.57940 * 183.29672 * 29 20 19 49 49 H 1.09002 * 109.59064 * 39.11098 * 30 17 14 50 50 H 1.08997 * 109.71048 * 278.74492 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.0826 0.0543 2.3117 6 6 1.6417 1.3696 2.3294 7 6 1.7155 2.1059 3.4959 8 6 2.2377 1.5363 4.6424 9 6 2.6830 0.2275 4.6259 10 6 2.6066 -0.5147 3.4633 11 6 2.0323 -0.7104 -1.2305 12 8 2.6529 -1.7467 -1.1216 13 7 1.7918 -0.1941 -2.4521 14 6 2.2806 -0.8843 -3.6483 15 1 2.9602 -1.7168 -3.4660 16 6 1.3252 -0.9995 -4.8382 17 6 2.5156 -0.0428 -4.9021 18 6 2.2263 1.4590 -4.8165 19 6 2.0094 2.0011 -6.2345 20 7 3.1355 1.5824 -7.0790 21 6 3.8896 2.5149 -7.7402 22 1 4.0509 3.4885 -7.3015 23 6 4.4467 2.2086 -8.9741 24 7 4.0309 1.1523 -9.6400 25 14 5.7866 3.2959 -9.6896 26 1 6.0731 4.4108 -8.7514 27 1 7.0189 2.4930 -9.8944 28 1 5.3335 3.8480 -10.9915 29 6 3.4433 0.1524 -7.2066 30 6 3.6891 -0.4274 -5.8083 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8901 34 1 1.2378 1.8163 1.4329 35 1 1.3688 3.1286 3.5112 36 1 2.2982 2.1149 5.5524 37 1 3.0909 -0.2150 5.5227 38 1 2.9549 -1.5369 3.4508 39 1 1.2957 0.6349 -2.5391 40 1 0.3329 -0.5614 -4.7313 41 1 1.3765 -1.9076 -5.4389 42 1 3.0727 1.9686 -4.3560 43 1 1.3289 1.6250 -4.2206 44 1 1.0801 1.6013 -6.6404 45 1 1.9592 3.0896 -6.2058 46 1 4.4205 0.9381 -10.5021 47 1 2.6028 -0.3620 -7.6727 48 1 4.3368 0.0241 -7.8176 49 1 3.7623 -1.5132 -5.8706 50 1 4.6156 -0.0214 -5.4022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479986331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:38 Heat of formation + Delta-G solvation = 0.916038 kcal Electronic energy + Delta-G solvation = -29685.319811 eV Core-core repulsion = 25679.250143 eV Total energy + Delta-G solvation = -4006.069668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.92695 -39.81899 -38.55825 -37.45167 -35.50441 -33.61090 -32.26081 -31.52344 -31.03349 -30.06914 -29.89727 -28.28859 -25.27444 -24.37076 -23.33362 -22.71545 -22.50285 -21.70690 -20.81697 -20.31322 -18.75208 -18.29443 -17.59172 -16.60623 -16.44638 -16.06742 -16.01692 -15.60552 -14.94382 -14.73457 -14.67444 -14.22789 -14.10320 -13.79977 -13.57142 -13.49580 -13.41969 -13.17366 -12.96477 -12.77440 -12.70533 -12.29704 -12.19599 -11.90962 -11.70957 -11.64282 -11.45011 -11.33969 -11.13257 -10.99238 -10.78141 -10.45766 -10.35302 -10.02449 -9.97032 -9.70625 -9.65972 -9.39643 -9.34619 -8.54621 -8.52952 -8.48899 -6.61372 -5.81259 -3.29369 0.98714 1.10551 2.31569 2.37120 3.32015 3.34845 3.43023 3.44864 3.45202 4.10073 4.22636 4.37648 4.46800 4.50163 4.51855 4.57368 4.78776 4.91682 4.97849 5.03376 5.08400 5.08745 5.15972 5.22031 5.32003 5.38111 5.44629 5.60408 5.61986 5.66320 5.80146 5.96212 6.00372 6.03050 6.04108 6.05701 6.19267 6.25458 6.38180 6.39954 6.49202 6.58733 6.60836 6.66380 6.80024 6.93446 7.04046 7.33168 7.35445 7.64208 7.77983 8.04213 8.46635 9.20208 9.82095 10.40621 11.26340 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.002019 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.491438 B =13866.828933 C =14535.189498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.067 3.933 3 H 0.099 0.901 4 O -0.284 6.284 5 C 0.132 3.868 6 C -0.213 4.213 7 C -0.079 4.079 8 C -0.161 4.161 9 C -0.080 4.080 10 C -0.150 4.150 11 C 0.520 3.480 12 O -0.518 6.518 13 N -0.690 5.690 14 C 0.068 3.932 15 H 0.133 0.867 16 C -0.180 4.180 17 C -0.094 4.094 18 C -0.098 4.098 19 C 0.150 3.850 20 N -0.589 5.589 21 C -0.256 4.256 22 H 0.063 0.937 23 C 0.006 3.994 24 N -0.900 5.900 25 Si 0.901 3.099 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.290 1.290 29 C 0.176 3.824 30 C -0.107 4.107 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.401 0.599 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.019 0.981 45 H 0.054 0.946 46 H 0.254 0.746 47 H 0.019 0.981 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.348 -0.573 24.724 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.007 3.993 3 H 0.117 0.883 4 O -0.196 6.196 5 C 0.086 3.914 6 C -0.232 4.232 7 C -0.098 4.098 8 C -0.179 4.179 9 C -0.098 4.098 10 C -0.169 4.169 11 C 0.305 3.695 12 O -0.392 6.392 13 N -0.341 5.341 14 C -0.037 4.037 15 H 0.151 0.849 16 C -0.219 4.219 17 C -0.096 4.096 18 C -0.137 4.137 19 C 0.023 3.977 20 N -0.311 5.311 21 C -0.385 4.385 22 H 0.081 0.919 23 C -0.194 4.194 24 N -0.544 5.544 25 Si 0.731 3.269 26 H -0.202 1.202 27 H -0.215 1.215 28 H -0.217 1.217 29 C 0.050 3.950 30 C -0.146 4.146 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.236 0.764 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.105 0.895 49 H 0.070 0.930 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.789 -1.588 24.606 25.859 hybrid contribution 0.268 1.113 -0.572 1.279 sum -7.521 -0.476 24.034 25.188 Atomic orbital electron populations 1.22345 0.92466 1.04612 1.03955 1.22189 0.95814 0.97091 0.84200 0.88311 1.86223 1.80724 1.37515 1.15187 1.19103 0.95337 0.90408 0.86522 1.21330 1.07455 0.94259 1.00139 1.20966 0.97154 0.99462 0.92169 1.21085 1.02357 0.95822 0.98678 1.20990 0.97663 0.94052 0.97123 1.20492 1.03944 1.01525 0.90913 1.19952 0.80134 0.85560 0.83890 1.90738 1.39232 1.23001 1.86227 1.45250 1.57152 1.27150 1.04565 1.21941 1.01905 1.00105 0.79713 0.84920 1.23541 0.95375 1.02395 1.00568 1.21966 0.97840 0.93585 0.96181 1.21643 0.99456 0.92540 1.00088 1.20846 0.90876 0.97278 0.88696 1.43934 1.31233 1.02353 1.53588 1.19185 1.25058 0.96200 0.98097 0.91948 1.25167 1.00528 0.98071 0.95590 1.70012 1.42416 1.28302 1.13697 0.86243 0.81802 0.80047 0.78784 1.20223 1.21515 1.21673 1.20721 1.00494 0.83294 0.90537 1.21896 0.95261 0.98914 0.98555 0.90113 0.90496 0.90502 0.85223 0.85711 0.85914 0.85316 0.85022 0.76363 0.88979 0.88204 0.91738 0.93700 0.96299 0.92723 0.93631 0.96250 0.89539 0.92972 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 9.11 37.16 0.34 -0.96 16 2 C 0.07 0.67 2.64 -27.88 -0.07 0.60 16 3 H 0.10 0.79 6.30 -51.93 -0.33 0.46 16 4 O -0.28 -3.53 9.34 -39.30 -0.37 -3.90 16 5 C 0.13 1.40 6.58 -39.22 -0.26 1.14 16 6 C -0.21 -1.84 8.20 -39.43 -0.32 -2.16 16 7 C -0.08 -0.60 10.04 -39.60 -0.40 -0.99 16 8 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 9 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 10 C -0.15 -1.46 9.99 -39.44 -0.39 -1.85 16 11 C 0.52 6.89 7.18 -10.98 -0.08 6.81 16 12 O -0.52 -9.17 16.07 -14.30 -0.23 -9.40 16 13 N -0.69 -8.16 5.31 -53.88 -0.29 -8.45 16 14 C 0.07 0.97 6.14 -68.01 -0.42 0.55 16 15 H 0.13 2.08 7.40 -51.93 -0.38 1.70 16 16 C -0.18 -2.50 9.87 -26.79 -0.26 -2.76 16 17 C -0.09 -1.49 1.94 -154.49 -0.30 -1.79 16 18 C -0.10 -1.54 5.37 -26.45 -0.14 -1.68 16 19 C 0.15 2.97 6.52 -3.67 -0.02 2.94 16 20 N -0.59 -14.27 2.92 -172.25 -0.50 -14.77 16 21 C -0.26 -6.86 9.52 -15.06 -0.14 -7.00 16 22 H 0.06 1.65 7.87 -52.49 -0.41 1.24 16 23 C 0.01 0.15 4.94 -17.43 -0.09 0.07 16 24 N -0.90 -25.76 11.30 55.49 0.63 -25.14 16 25 Si 0.90 21.40 29.58 -169.99 -5.03 16.37 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 C 0.18 4.06 5.36 -3.68 -0.02 4.04 16 30 C -0.11 -1.99 5.83 -26.46 -0.15 -2.14 16 31 H 0.08 0.44 7.92 -51.93 -0.41 0.03 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.48 6.89 -51.92 -0.36 0.13 16 34 H 0.13 0.88 5.45 -52.49 -0.29 0.60 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.40 3.71 6.90 -40.82 -0.28 3.43 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.56 6.75 -51.93 -0.35 0.20 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.09 2.26 6.12 -51.93 -0.32 1.94 16 49 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 50 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 400.31 15.07 6.03 6.03 Total: -1.00 -32.73 400.31 -11.03 -43.76 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.75 Total: 3.28 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -3.53 Total: -7.79 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.16 Total: -48.36 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.60 Total: -13.30 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.73 -11.03 -43.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479986331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.678 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds