Wall clock time and date at job start Wed Apr 1 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 O 1.42899 * 109.47295 * 120.00838 * 2 1 3 5 5 C 1.35902 * 116.99746 * 276.50898 * 4 2 1 6 6 C 1.38734 * 120.05477 * 3.34616 * 5 4 2 7 7 C 1.38149 * 119.94387 * 179.74923 * 6 5 4 8 8 C 1.38264 * 120.05168 * 0.49881 * 7 6 5 9 9 C 1.38262 * 120.11433 * 359.77318 * 8 7 6 10 10 C 1.38139 * 120.05453 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.47117 * 240.00184 * 2 1 3 12 12 O 1.21277 * 120.00325 * 245.00510 * 11 2 1 13 13 N 1.34783 * 119.99747 * 64.99695 * 11 2 1 14 14 C 1.46501 * 120.00117 * 179.97438 * 13 11 2 15 15 H 1.09001 * 115.55041 * 350.69663 * 14 13 11 16 16 C 1.53029 * 117.52039 * 136.40674 * 14 13 11 17 17 C 1.52818 * 117.50529 * 204.99950 * 14 13 11 18 18 C 1.53186 * 117.70856 * 0.12512 * 17 14 13 19 19 C 1.53353 * 108.76189 * 201.11521 * 18 17 14 20 20 N 1.46851 * 108.80834 * 308.67781 * 19 18 17 21 21 C 1.36940 * 120.38356 * 236.87959 * 20 19 18 22 22 H 1.07999 * 119.99738 * 32.66527 * 21 20 19 23 23 C 1.38805 * 120.00119 * 212.66286 * 21 20 19 24 24 N 1.31615 * 120.00254 * 14.45728 * 23 21 20 25 25 Si 1.86804 * 119.99882 * 194.45808 * 23 21 20 26 26 H 1.48500 * 109.47043 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47143 * 120.00079 * 25 23 21 28 28 H 1.48497 * 109.47192 * 240.00171 * 25 23 21 29 29 C 1.46837 * 119.23447 * 56.90728 * 20 19 18 30 30 C 1.53179 * 117.70959 * 144.87026 * 17 14 13 31 31 H 1.08996 * 109.47339 * 59.99517 * 1 2 3 32 32 H 1.09000 * 109.46982 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46481 * 299.99640 * 1 2 3 34 34 H 1.07998 * 120.02986 * 359.97438 * 6 5 4 35 35 H 1.07996 * 119.97325 * 180.23750 * 7 6 5 36 36 H 1.08005 * 119.94099 * 179.75424 * 8 7 6 37 37 H 1.08002 * 119.97007 * 179.97438 * 9 8 7 38 38 H 1.08005 * 120.02841 * 179.97438 * 10 9 8 39 39 H 0.96999 * 119.99778 * 0.02562 * 13 11 2 40 40 H 1.08993 * 117.50846 * 0.02562 * 16 14 13 41 41 H 1.09000 * 117.50443 * 214.94104 * 16 14 13 42 42 H 1.08998 * 109.59230 * 81.32929 * 18 17 14 43 43 H 1.08997 * 109.58960 * 320.89312 * 18 17 14 44 44 H 1.09000 * 109.58460 * 68.47479 * 19 18 17 45 45 H 1.08998 * 109.57971 * 188.88139 * 19 18 17 46 46 H 0.97003 * 120.00067 * 180.02562 * 24 23 21 47 47 H 1.09006 * 109.58171 * 62.90066 * 29 20 19 48 48 H 1.09002 * 109.57940 * 183.29672 * 29 20 19 49 49 H 1.09002 * 109.59064 * 39.11098 * 30 17 14 50 50 H 1.08997 * 109.71048 * 278.74492 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.0826 0.0543 2.3117 6 6 1.6417 1.3696 2.3294 7 6 1.7155 2.1059 3.4959 8 6 2.2377 1.5363 4.6424 9 6 2.6830 0.2275 4.6259 10 6 2.6066 -0.5147 3.4633 11 6 2.0323 -0.7104 -1.2305 12 8 2.6529 -1.7467 -1.1216 13 7 1.7918 -0.1941 -2.4521 14 6 2.2806 -0.8843 -3.6483 15 1 2.9602 -1.7168 -3.4660 16 6 1.3252 -0.9995 -4.8382 17 6 2.5156 -0.0428 -4.9021 18 6 2.2263 1.4590 -4.8165 19 6 2.0094 2.0011 -6.2345 20 7 3.1355 1.5824 -7.0790 21 6 3.8896 2.5149 -7.7402 22 1 4.0509 3.4885 -7.3015 23 6 4.4467 2.2086 -8.9741 24 7 4.0309 1.1523 -9.6400 25 14 5.7866 3.2959 -9.6896 26 1 6.0731 4.4108 -8.7514 27 1 7.0189 2.4930 -9.8944 28 1 5.3335 3.8480 -10.9915 29 6 3.4433 0.1524 -7.2066 30 6 3.6891 -0.4274 -5.8083 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8901 34 1 1.2378 1.8163 1.4329 35 1 1.3688 3.1286 3.5112 36 1 2.2982 2.1149 5.5524 37 1 3.0909 -0.2150 5.5227 38 1 2.9549 -1.5369 3.4508 39 1 1.2957 0.6349 -2.5391 40 1 0.3329 -0.5614 -4.7313 41 1 1.3765 -1.9076 -5.4389 42 1 3.0727 1.9686 -4.3560 43 1 1.3289 1.6250 -4.2206 44 1 1.0801 1.6013 -6.6404 45 1 1.9592 3.0896 -6.2058 46 1 4.4205 0.9381 -10.5021 47 1 2.6028 -0.3620 -7.6727 48 1 4.3368 0.0241 -7.8176 49 1 3.7623 -1.5132 -5.8706 50 1 4.6156 -0.0214 -5.4022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479986331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:37 Heat of formation + Delta-G solvation = -17.266124 kcal Electronic energy + Delta-G solvation = -29686.108249 eV Core-core repulsion = 25679.250143 eV Total energy + Delta-G solvation = -4006.858106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.76492 -40.82331 -39.72284 -38.24602 -37.10429 -34.79776 -33.64284 -32.71277 -31.75178 -31.55121 -30.57197 -29.89780 -26.27997 -25.97671 -24.12608 -23.98375 -23.43335 -22.92291 -22.16957 -21.34298 -19.82878 -19.42995 -18.69663 -18.07794 -17.51077 -16.92135 -16.80690 -16.73642 -16.40468 -15.80613 -15.63495 -15.40733 -15.30513 -15.11956 -14.92216 -14.72328 -14.38500 -14.16271 -14.10223 -13.82031 -13.67687 -13.31596 -13.28336 -13.09193 -12.88336 -12.86184 -12.62627 -12.55464 -12.44413 -12.25678 -12.10404 -12.00102 -11.80741 -11.74211 -11.39155 -11.26811 -11.00235 -10.69431 -10.50335 -9.93827 -9.73570 -9.18746 -8.56832 -7.85862 -5.36893 0.40024 0.48249 1.35820 1.44979 1.46671 1.47544 1.57285 2.49558 2.50868 2.85267 2.91910 3.29530 3.40047 3.63646 3.67747 3.79649 3.83961 3.86309 3.93916 3.98619 4.01264 4.13151 4.29942 4.40527 4.52179 4.53480 4.57774 4.63261 4.65869 4.73907 4.76659 4.85125 4.89140 4.93902 5.04856 5.08067 5.08876 5.11187 5.16530 5.31451 5.35578 5.39624 5.42901 5.49158 5.55357 5.61924 5.66796 5.77113 5.84250 6.31197 6.43727 6.46734 7.07451 7.17814 7.89072 8.41357 9.18871 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.002019 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.491438 B =13866.828933 C =14535.189498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 H 0.124 0.876 4 O -0.316 6.316 5 C 0.106 3.894 6 C -0.217 4.217 7 C -0.083 4.083 8 C -0.163 4.163 9 C -0.084 4.084 10 C -0.174 4.174 11 C 0.518 3.482 12 O -0.570 6.570 13 N -0.675 5.675 14 C 0.083 3.917 15 H 0.115 0.885 16 C -0.165 4.165 17 C -0.112 4.112 18 C -0.083 4.083 19 C 0.144 3.856 20 N -0.608 5.608 21 C -0.261 4.261 22 H 0.064 0.936 23 C -0.049 4.049 24 N -0.933 5.933 25 Si 0.964 3.036 26 H -0.266 1.266 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.184 3.816 30 C -0.096 4.096 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.417 0.583 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.019 0.981 45 H 0.055 0.945 46 H 0.249 0.751 47 H 0.001 0.999 48 H 0.047 0.953 49 H 0.064 0.936 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.929 1.529 27.155 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 H 0.141 0.859 4 O -0.229 6.229 5 C 0.061 3.939 6 C -0.235 4.235 7 C -0.101 4.101 8 C -0.181 4.181 9 C -0.101 4.101 10 C -0.193 4.193 11 C 0.305 3.695 12 O -0.448 6.448 13 N -0.327 5.327 14 C -0.023 4.023 15 H 0.133 0.867 16 C -0.203 4.203 17 C -0.113 4.113 18 C -0.122 4.122 19 C 0.019 3.981 20 N -0.332 5.332 21 C -0.392 4.392 22 H 0.081 0.919 23 C -0.245 4.245 24 N -0.579 5.579 25 Si 0.792 3.208 26 H -0.190 1.190 27 H -0.219 1.219 28 H -0.218 1.218 29 C 0.058 3.942 30 C -0.136 4.136 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.141 0.859 39 H 0.256 0.744 40 H 0.134 0.866 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.019 0.981 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.406 0.558 27.069 28.662 hybrid contribution 0.746 0.463 -1.259 1.535 sum -8.660 1.021 25.809 27.243 Atomic orbital electron populations 1.22357 0.90181 1.04302 1.05899 1.22307 0.97352 0.97202 0.82102 0.85913 1.86171 1.81545 1.39020 1.16212 1.19353 0.96893 0.91470 0.86142 1.21563 1.07110 0.93409 1.01407 1.21353 0.96457 1.00560 0.91721 1.21467 1.01250 0.95651 0.99711 1.21279 0.97319 0.94426 0.97117 1.20688 1.04990 1.01752 0.91880 1.20616 0.78997 0.84940 0.84979 1.90717 1.41660 1.25472 1.86991 1.45091 1.56621 1.27448 1.03545 1.21627 1.01704 0.98865 0.80137 0.86681 1.23631 0.95650 1.01556 0.99500 1.21807 0.98011 0.94280 0.97249 1.21478 1.01259 0.91810 0.97696 1.21025 0.89264 0.97617 0.90190 1.44198 1.32619 1.02229 1.54116 1.19499 1.25019 0.96602 0.98073 0.91855 1.25894 1.02789 0.99545 0.96257 1.70159 1.43788 1.30059 1.13908 0.85266 0.78979 0.78617 0.77941 1.19005 1.21928 1.21834 1.20460 0.97882 0.83374 0.92455 1.21649 0.96240 0.99287 0.96401 0.87541 0.91959 0.89102 0.83401 0.83132 0.83477 0.83303 0.85856 0.74386 0.86618 0.88253 0.92440 0.89186 0.96332 0.92598 0.94164 0.98106 0.93416 0.91737 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.11 71.98 0.66 -1.36 16 2 C 0.07 1.26 2.64 29.85 0.08 1.34 16 3 H 0.12 1.58 6.30 -2.39 -0.02 1.57 16 4 O -0.32 -7.77 9.34 -73.46 -0.69 -8.46 16 5 C 0.11 2.18 6.58 22.51 0.15 2.33 16 6 C -0.22 -3.21 8.20 22.37 0.18 -3.02 16 7 C -0.08 -0.99 10.04 22.25 0.22 -0.77 16 8 C -0.16 -1.93 10.04 22.28 0.22 -1.70 16 9 C -0.08 -1.18 10.04 22.25 0.22 -0.95 16 10 C -0.17 -3.38 9.99 22.36 0.22 -3.16 16 11 C 0.52 13.02 7.18 87.66 0.63 13.65 16 12 O -0.57 -20.39 16.07 15.97 0.26 -20.14 16 13 N -0.68 -14.12 5.31 -442.77 -2.35 -16.47 16 14 C 0.08 2.18 6.14 44.94 0.28 2.46 16 15 H 0.12 3.55 7.40 -2.39 -0.02 3.54 16 16 C -0.17 -4.14 9.87 30.55 0.30 -3.84 16 17 C -0.11 -3.36 1.94 -52.17 -0.10 -3.46 16 18 C -0.08 -2.40 5.37 30.77 0.17 -2.23 16 19 C 0.14 5.52 6.52 86.43 0.56 6.08 16 20 N -0.61 -29.74 2.92 -698.89 -2.04 -31.78 16 21 C -0.26 -14.17 9.52 84.03 0.80 -13.37 16 22 H 0.06 3.35 7.87 -2.91 -0.02 3.33 16 23 C -0.05 -2.74 4.94 84.86 0.42 -2.32 16 24 N -0.93 -55.15 11.30 21.65 0.24 -54.90 16 25 Si 0.96 44.74 29.58 68.60 2.03 46.76 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 29 C 0.18 8.78 5.36 86.43 0.46 9.24 16 30 C -0.10 -3.62 5.83 30.77 0.18 -3.44 16 31 H 0.11 0.69 7.92 -2.39 -0.02 0.67 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 0.85 6.89 -2.38 -0.02 0.83 16 34 H 0.15 1.49 5.45 -2.91 -0.02 1.47 16 35 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16 36 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 37 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.42 5.88 6.90 -92.71 -0.64 5.24 16 40 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.09 1.79 6.75 -2.39 -0.02 1.77 16 44 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 2.09 7.92 -2.39 -0.02 2.07 16 46 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 47 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 48 H 0.05 2.62 6.12 -2.39 -0.01 2.60 16 49 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 50 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -75.08 400.31 3.41 -71.67 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.30 Total: 17.84 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 5.66 Total: -4.53 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -4.15 Total: -103.15 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.43 Total: -28.59 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -75.08 3.41 -71.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479986331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.399 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds