Wall clock time and date at job start Wed Apr 1 2020 02:50:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53005 * 109.47017 * 2 1
4 4 C 1.47196 * 109.47585 * 120.00197 * 2 1 3
5 5 C 2.64592 * 109.47491 * 120.00063 * 2 1 3
6 6 C 4.07798 * 109.47533 * 120.00162 * 2 1 3
7 7 O 1.21617 * 119.99639 * 240.45341 * 6 5 4
8 8 N 1.34769 * 120.00232 * 60.44894 * 6 5 4
9 9 C 1.46500 * 120.00130 * 179.97438 * 8 6 5
10 10 C 1.52996 * 109.47014 * 180.02562 * 9 8 6
11 11 H 1.08999 * 109.47035 * 65.00547 * 10 9 8
12 12 C 1.53001 * 109.47080 * 185.00135 * 10 9 8
13 13 N 1.46903 * 109.47483 * 305.00507 * 10 9 8
14 14 C 1.46896 * 110.99987 * 155.00363 * 13 10 9
15 15 C 1.50701 * 109.47050 * 179.97438 * 14 13 10
16 16 C 1.38302 * 119.93101 * 89.99407 * 15 14 13
17 17 C 1.38106 * 120.07107 * 180.02562 * 16 15 14
18 18 C 1.38879 * 119.92571 * 359.97438 * 17 16 15
19 19 O 1.35753 * 120.06541 * 180.02562 * 18 17 16
20 20 C 1.34831 * 117.00188 * 354.46649 * 19 18 17
21 21 H 1.08005 * 119.99910 * 5.05947 * 20 19 18
22 22 C 1.38653 * 120.00325 * 185.05796 * 20 19 18
23 23 N 1.31556 * 119.99986 * 180.02562 * 22 20 19
24 24 Si 1.86797 * 119.99759 * 359.97438 * 22 20 19
25 25 H 1.48505 * 109.47054 * 90.00219 * 24 22 20
26 26 H 1.48502 * 109.47026 * 209.99915 * 24 22 20
27 27 H 1.48498 * 109.47177 * 330.00281 * 24 22 20
28 28 C 1.38871 * 119.86478 * 0.27488 * 18 17 16
29 29 C 1.38102 * 119.92968 * 359.49233 * 28 18 17
30 30 H 1.08999 * 109.47203 * 299.99546 * 1 2 3
31 31 H 1.08995 * 109.47890 * 59.99825 * 1 2 3
32 32 H 1.09004 * 109.47375 * 180.02562 * 1 2 3
33 33 H 1.08999 * 109.46743 * 240.00184 * 2 1 3
34 34 H 1.09000 * 109.47290 * 180.02562 * 3 2 1
35 35 H 1.08999 * 109.46693 * 300.00310 * 3 2 1
36 36 H 1.08999 * 109.46764 * 60.00184 * 3 2 1
37 37 H 0.97007 * 119.99804 * 0.02562 * 8 6 5
38 38 H 1.08999 * 109.46752 * 60.00811 * 9 8 6
39 39 H 1.08999 * 109.47463 * 300.01014 * 9 8 6
40 40 H 1.08993 * 109.47635 * 300.00301 * 12 10 9
41 41 H 1.09007 * 109.46711 * 60.00005 * 12 10 9
42 42 H 1.08996 * 109.47568 * 179.97438 * 12 10 9
43 43 H 1.00895 * 111.00134 * 31.04533 * 13 10 9
44 44 H 1.09000 * 109.47303 * 59.99863 * 14 13 10
45 45 H 1.09000 * 109.46921 * 299.99445 * 14 13 10
46 46 H 1.08001 * 119.96675 * 0.02562 * 16 15 14
47 47 H 1.07996 * 120.03520 * 179.97438 * 17 16 15
48 48 H 0.97002 * 119.99567 * 179.97438 * 23 22 20
49 49 H 1.08001 * 120.03616 * 179.72161 * 28 18 17
50 50 H 1.08003 * 119.96565 * 180.22670 * 29 28 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0207 -0.6939 1.2018
5 6 2.4121 -1.2473 2.1603
6 6 2.8896 -1.9224 3.3295
7 8 3.0844 -1.2984 4.3550
8 7 3.1229 -3.2493 3.2935
9 6 3.6119 -3.9398 4.4894
10 6 3.7932 -5.4274 4.1811
11 1 4.5786 -5.5508 3.4355
12 6 4.1836 -6.1696 5.4608
13 7 2.5338 -5.9768 3.6611
14 6 2.7807 -7.1591 2.8251
15 6 1.4688 -7.6940 2.3115
16 6 0.9599 -7.2362 1.1098
17 6 -0.2424 -7.7239 0.6366
18 6 -0.9402 -8.6756 1.3688
19 8 -2.1221 -9.1574 0.9061
20 6 -2.6196 -8.5892 -0.2108
21 1 -2.0432 -7.8456 -0.7412
22 6 -3.8712 -8.9596 -0.6787
23 7 -4.3564 -8.4055 -1.7688
24 14 -4.8678 -10.2463 0.2382
25 1 -5.7196 -9.5800 1.2559
26 1 -5.7284 -10.9826 -0.7223
27 1 -3.9477 -11.1990 0.9097
28 6 -0.4292 -9.1295 2.5776
29 6 0.7759 -8.6413 3.0430
30 1 -0.3633 0.5138 0.8900
31 1 -0.3635 0.5138 -0.8899
32 1 -0.3634 -1.0277 0.0005
33 1 1.8932 -0.5138 -0.8900
34 1 3.1300 1.4426 -0.0005
35 1 1.6765 1.9563 -0.8900
36 1 1.6766 1.9563 0.8900
37 1 2.9678 -3.7469 2.4754
38 1 2.8905 -3.8213 5.2978
39 1 4.5683 -3.5122 4.7904
40 1 5.1180 -5.7620 5.8465
41 1 3.3981 -6.0461 6.2064
42 1 4.3123 -7.2294 5.2413
43 1 2.0163 -5.2758 3.1524
44 1 3.2781 -7.9263 3.4186
45 1 3.4153 -6.8827 1.9832
46 1 1.5033 -6.4964 0.5407
47 1 -0.6394 -7.3657 -0.3016
48 1 -5.2318 -8.6649 -2.0962
49 1 -0.9718 -9.8662 3.1515
50 1 1.1757 -8.9967 3.9813
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001480458239.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:50:44
Heat of formation + Delta-G solvation = 2.681988 kcal
Electronic energy + Delta-G solvation = -28413.987191 eV
Core-core repulsion = 24407.994101 eV
Total energy + Delta-G solvation = -4005.993091 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.07540 -39.28238 -37.88381 -36.75215 -36.57578 -34.27219 -32.57925 -32.29999
-31.55386 -30.29231 -28.86461 -27.58884 -27.12901 -25.64534 -24.21684 -23.69277
-22.11146 -21.77176 -20.94332 -20.47092 -19.06694 -17.93244 -17.34849 -16.67644
-16.46542 -16.27937 -15.64412 -15.19735 -14.98157 -14.92853 -14.61893 -14.42279
-14.00733 -13.89407 -13.82672 -13.65018 -13.10681 -12.91626 -12.74053 -12.72826
-12.63223 -12.43874 -12.35730 -12.24337 -12.06065 -11.99615 -11.84892 -11.79102
-11.34092 -11.14783 -10.80349 -10.77638 -10.72069 -10.67923 -10.59925 -10.42476
-10.18933 -9.48284 -9.43328 -8.91215 -8.56173 -8.30084 -7.37656 -6.45931
-4.12624 1.29799 2.00736 2.08160 2.12501 2.76035 3.19336 3.23416
3.27205 3.37668 3.82310 4.00363 4.20381 4.38679 4.52715 4.55458
4.68951 4.70605 4.81191 4.85340 4.97320 5.06621 5.07381 5.21515
5.22741 5.29394 5.30805 5.38756 5.44872 5.51428 5.52914 5.59076
5.59678 5.66778 5.74803 5.77637 5.80631 5.85695 5.92224 6.07339
6.09607 6.29114 6.52668 6.73388 6.86085 6.95368 7.00569 7.02946
7.17354 7.21900 7.30221 7.56833 7.75044 7.78284 7.99431 8.89433
9.51635 10.61626
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.007396 B = 0.002580 C = 0.001985
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3784.863891 B =10849.260223 C =14099.991793
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.005 3.995
3 C -0.147 4.147
4 C -0.062 4.062
5 C -0.234 4.234
6 C 0.639 3.361
7 O -0.524 6.524
8 N -0.720 5.720
9 C 0.117 3.883
10 C 0.071 3.929
11 H 0.050 0.950
12 C -0.137 4.137
13 N -0.681 5.681
14 C 0.116 3.884
15 C -0.179 4.179
16 C -0.068 4.068
17 C -0.221 4.221
18 C 0.162 3.838
19 O -0.217 6.217
20 C -0.390 4.390
21 H 0.106 0.894
22 C 0.064 3.936
23 N -0.879 5.879
24 Si 0.905 3.095
25 H -0.273 1.273
26 H -0.282 1.282
27 H -0.259 1.259
28 C -0.194 4.194
29 C -0.053 4.053
30 H 0.062 0.938
31 H 0.072 0.928
32 H 0.066 0.934
33 H 0.103 0.897
34 H 0.060 0.940
35 H 0.070 0.930
36 H 0.062 0.938
37 H 0.402 0.598
38 H 0.083 0.917
39 H 0.078 0.922
40 H 0.057 0.943
41 H 0.066 0.934
42 H 0.061 0.939
43 H 0.341 0.659
44 H 0.074 0.926
45 H 0.030 0.970
46 H 0.104 0.896
47 H 0.132 0.868
48 H 0.280 0.720
49 H 0.117 0.883
50 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.521 12.024 6.025 21.304
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.013 4.013
3 C -0.204 4.204
4 C -0.065 4.065
5 C -0.237 4.237
6 C 0.426 3.574
7 O -0.401 6.401
8 N -0.373 5.373
9 C -0.006 4.006
10 C -0.039 4.039
11 H 0.068 0.932
12 C -0.196 4.196
13 N -0.315 5.315
14 C -0.012 4.012
15 C -0.180 4.180
16 C -0.087 4.087
17 C -0.240 4.240
18 C 0.110 3.890
19 O -0.122 6.122
20 C -0.465 4.465
21 H 0.123 0.877
22 C -0.140 4.140
23 N -0.517 5.517
24 Si 0.731 3.269
25 H -0.198 1.198
26 H -0.208 1.208
27 H -0.184 1.184
28 C -0.213 4.213
29 C -0.071 4.071
30 H 0.081 0.919
31 H 0.091 0.909
32 H 0.085 0.915
33 H 0.121 0.879
34 H 0.079 0.921
35 H 0.089 0.911
36 H 0.081 0.919
37 H 0.238 0.762
38 H 0.101 0.899
39 H 0.096 0.904
40 H 0.076 0.924
41 H 0.085 0.915
42 H 0.080 0.920
43 H 0.161 0.839
44 H 0.093 0.907
45 H 0.048 0.952
46 H 0.122 0.878
47 H 0.150 0.850
48 H 0.090 0.910
49 H 0.135 0.865
50 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 16.208 11.920 7.278 21.395
hybrid contribution -0.289 -0.286 -1.108 1.180
sum 15.919 11.634 6.171 20.660
Atomic orbital electron populations
1.21861 0.92314 1.03377 1.03012 1.18579 0.96639 0.95271 0.90773
1.21857 1.01599 0.93935 1.02999 1.22713 0.93093 0.96348 0.94301
1.20587 1.04856 1.02263 0.96015 1.14601 0.77051 0.81374 0.84400
1.90859 1.51583 1.66283 1.31349 1.45874 1.67779 1.07887 1.15715
1.21704 1.00683 0.90766 0.87442 1.21805 0.92042 0.91977 0.98119
0.93220 1.21725 1.01066 1.00348 0.96428 1.60630 1.18814 1.09580
1.42489 1.20716 0.94253 0.92260 0.93953 1.19156 0.98482 1.03097
0.97261 1.20624 0.95043 0.98032 0.94987 1.21225 0.97205 1.02650
1.02962 1.19147 0.86302 0.91606 0.91984 1.83578 1.31493 1.55172
1.41909 1.20759 1.02325 1.23265 1.00194 0.87660 1.24467 0.95856
0.97825 0.95812 1.69644 1.18925 1.41892 1.21218 0.86184 0.79841
0.81456 0.79452 1.19837 1.20759 1.18353 1.20235 0.98557 1.06203
0.96312 1.20466 0.93391 0.95474 0.97807 0.91924 0.90939 0.91512
0.87864 0.92072 0.91054 0.91896 0.76247 0.89905 0.90423 0.92392
0.91456 0.91978 0.83916 0.90744 0.95234 0.87769 0.85033 0.91019
0.86540 0.86832
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.05 9.15 37.16 0.34 -0.71 16
2 C 0.01 0.04 3.30 -93.41 -0.31 -0.27 16
3 C -0.15 -0.88 9.15 37.16 0.34 -0.54 16
4 C -0.06 -0.63 12.56 -37.13 -0.47 -1.10 16
5 C -0.23 -2.78 13.61 -38.83 -0.53 -3.31 16
6 C 0.64 8.08 7.65 -14.33 -0.11 7.97 16
7 O -0.52 -8.31 17.09 5.26 0.09 -8.22 16
8 N -0.72 -7.07 4.98 -62.77 -0.31 -7.38 16
9 C 0.12 1.06 5.31 -4.04 -0.02 1.04 16
10 C 0.07 0.60 2.81 -67.71 -0.19 0.41 16
11 H 0.05 0.39 7.80 -51.93 -0.40 -0.01 16
12 C -0.14 -1.06 9.42 37.16 0.35 -0.71 16
13 N -0.68 -7.30 6.29 -107.99 -0.68 -7.98 16
14 C 0.12 1.34 5.61 -4.98 -0.03 1.31 16
15 C -0.18 -2.73 5.40 -104.58 -0.56 -3.29 16
16 C -0.07 -1.14 9.69 -39.61 -0.38 -1.52 16
17 C -0.22 -4.57 9.17 -39.39 -0.36 -4.93 16
18 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16
19 O -0.22 -5.63 8.59 0.04 0.00 -5.63 16
20 C -0.39 -10.80 9.95 30.89 0.31 -10.50 16
21 H 0.11 2.97 5.44 -52.48 -0.29 2.68 16
22 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16
23 N -0.88 -25.02 13.96 55.48 0.77 -24.25 16
24 Si 0.91 21.44 28.62 -169.99 -4.86 16.58 16
25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
27 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16
28 C -0.19 -3.74 9.99 -39.40 -0.39 -4.14 16
29 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16
30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16
34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
37 H 0.40 3.37 7.34 -40.82 -0.30 3.07 16
38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16
40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
41 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16
42 H 0.06 0.49 7.45 -51.93 -0.39 0.10 16
43 H 0.34 3.78 6.70 -39.29 -0.26 3.52 16
44 H 0.07 0.81 7.38 -51.93 -0.38 0.43 16
45 H 0.03 0.31 8.00 -51.93 -0.42 -0.10 16
46 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16
47 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16
48 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16
49 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16
50 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16
LS Contribution 423.21 15.07 6.38 6.38
Total: -1.00 -31.55 423.21 -9.16 -40.71
By element:
Atomic # 1 Polarization: 14.06 SS G_CDS: -7.79 Total: 6.27 kcal
Atomic # 6 Polarization: -13.72 SS G_CDS: -2.76 Total: -16.48 kcal
Atomic # 7 Polarization: -39.39 SS G_CDS: -0.22 Total: -39.61 kcal
Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -4.86 Total: 16.58 kcal
Total LS contribution 6.38 Total: 6.38 kcal
Total: -31.55 -9.16 -40.71 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001480458239.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.392 kcal
(2) G-P(sol) polarization free energy of solvation -31.550 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.842 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.682 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds