Wall clock time and date at job start Wed Apr 1 2020 02:50:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53005 * 109.47017 * 2 1
4 4 C 1.47196 * 109.47585 * 120.00197 * 2 1 3
5 5 C 2.64592 * 109.47491 * 120.00063 * 2 1 3
6 6 C 4.07798 * 109.47533 * 120.00162 * 2 1 3
7 7 O 1.21617 * 119.99639 * 240.45341 * 6 5 4
8 8 N 1.34769 * 120.00232 * 60.44894 * 6 5 4
9 9 C 1.46500 * 120.00130 * 179.97438 * 8 6 5
10 10 C 1.52996 * 109.47014 * 180.02562 * 9 8 6
11 11 H 1.08999 * 109.47035 * 65.00547 * 10 9 8
12 12 C 1.53001 * 109.47080 * 185.00135 * 10 9 8
13 13 N 1.46903 * 109.47483 * 305.00507 * 10 9 8
14 14 C 1.46896 * 110.99987 * 155.00363 * 13 10 9
15 15 C 1.50701 * 109.47050 * 179.97438 * 14 13 10
16 16 C 1.38302 * 119.93101 * 89.99407 * 15 14 13
17 17 C 1.38106 * 120.07107 * 180.02562 * 16 15 14
18 18 C 1.38879 * 119.92571 * 359.97438 * 17 16 15
19 19 O 1.35753 * 120.06541 * 180.02562 * 18 17 16
20 20 C 1.34831 * 117.00188 * 354.46649 * 19 18 17
21 21 H 1.08005 * 119.99910 * 5.05947 * 20 19 18
22 22 C 1.38653 * 120.00325 * 185.05796 * 20 19 18
23 23 N 1.31556 * 119.99986 * 180.02562 * 22 20 19
24 24 Si 1.86797 * 119.99759 * 359.97438 * 22 20 19
25 25 H 1.48505 * 109.47054 * 90.00219 * 24 22 20
26 26 H 1.48502 * 109.47026 * 209.99915 * 24 22 20
27 27 H 1.48498 * 109.47177 * 330.00281 * 24 22 20
28 28 C 1.38871 * 119.86478 * 0.27488 * 18 17 16
29 29 C 1.38102 * 119.92968 * 359.49233 * 28 18 17
30 30 H 1.08999 * 109.47203 * 299.99546 * 1 2 3
31 31 H 1.08995 * 109.47890 * 59.99825 * 1 2 3
32 32 H 1.09004 * 109.47375 * 180.02562 * 1 2 3
33 33 H 1.08999 * 109.46743 * 240.00184 * 2 1 3
34 34 H 1.09000 * 109.47290 * 180.02562 * 3 2 1
35 35 H 1.08999 * 109.46693 * 300.00310 * 3 2 1
36 36 H 1.08999 * 109.46764 * 60.00184 * 3 2 1
37 37 H 0.97007 * 119.99804 * 0.02562 * 8 6 5
38 38 H 1.08999 * 109.46752 * 60.00811 * 9 8 6
39 39 H 1.08999 * 109.47463 * 300.01014 * 9 8 6
40 40 H 1.08993 * 109.47635 * 300.00301 * 12 10 9
41 41 H 1.09007 * 109.46711 * 60.00005 * 12 10 9
42 42 H 1.08996 * 109.47568 * 179.97438 * 12 10 9
43 43 H 1.00895 * 111.00134 * 31.04533 * 13 10 9
44 44 H 1.09000 * 109.47303 * 59.99863 * 14 13 10
45 45 H 1.09000 * 109.46921 * 299.99445 * 14 13 10
46 46 H 1.08001 * 119.96675 * 0.02562 * 16 15 14
47 47 H 1.07996 * 120.03520 * 179.97438 * 17 16 15
48 48 H 0.97002 * 119.99567 * 179.97438 * 23 22 20
49 49 H 1.08001 * 120.03616 * 179.72161 * 28 18 17
50 50 H 1.08003 * 119.96565 * 180.22670 * 29 28 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0207 -0.6939 1.2018
5 6 2.4121 -1.2473 2.1603
6 6 2.8896 -1.9224 3.3295
7 8 3.0844 -1.2984 4.3550
8 7 3.1229 -3.2493 3.2935
9 6 3.6119 -3.9398 4.4894
10 6 3.7932 -5.4274 4.1811
11 1 4.5786 -5.5508 3.4355
12 6 4.1836 -6.1696 5.4608
13 7 2.5338 -5.9768 3.6611
14 6 2.7807 -7.1591 2.8251
15 6 1.4688 -7.6940 2.3115
16 6 0.9599 -7.2362 1.1098
17 6 -0.2424 -7.7239 0.6366
18 6 -0.9402 -8.6756 1.3688
19 8 -2.1221 -9.1574 0.9061
20 6 -2.6196 -8.5892 -0.2108
21 1 -2.0432 -7.8456 -0.7412
22 6 -3.8712 -8.9596 -0.6787
23 7 -4.3564 -8.4055 -1.7688
24 14 -4.8678 -10.2463 0.2382
25 1 -5.7196 -9.5800 1.2559
26 1 -5.7284 -10.9826 -0.7223
27 1 -3.9477 -11.1990 0.9097
28 6 -0.4292 -9.1295 2.5776
29 6 0.7759 -8.6413 3.0430
30 1 -0.3633 0.5138 0.8900
31 1 -0.3635 0.5138 -0.8899
32 1 -0.3634 -1.0277 0.0005
33 1 1.8932 -0.5138 -0.8900
34 1 3.1300 1.4426 -0.0005
35 1 1.6765 1.9563 -0.8900
36 1 1.6766 1.9563 0.8900
37 1 2.9678 -3.7469 2.4754
38 1 2.8905 -3.8213 5.2978
39 1 4.5683 -3.5122 4.7904
40 1 5.1180 -5.7620 5.8465
41 1 3.3981 -6.0461 6.2064
42 1 4.3123 -7.2294 5.2413
43 1 2.0163 -5.2758 3.1524
44 1 3.2781 -7.9263 3.4186
45 1 3.4153 -6.8827 1.9832
46 1 1.5033 -6.4964 0.5407
47 1 -0.6394 -7.3657 -0.3016
48 1 -5.2318 -8.6649 -2.0962
49 1 -0.9718 -9.8662 3.1515
50 1 1.1757 -8.9967 3.9813
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001480458239.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:50:43
Heat of formation + Delta-G solvation = -17.060169 kcal
Electronic energy + Delta-G solvation = -28414.843276 eV
Core-core repulsion = 24407.994101 eV
Total energy + Delta-G solvation = -4006.849175 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-41.04646 -40.84234 -39.04739 -37.93293 -37.36457 -35.26449 -34.45505 -33.27266
-32.51692 -31.78390 -30.08375 -28.10644 -27.89598 -27.41737 -25.39233 -24.55177
-23.65605 -22.51181 -21.92784 -21.67041 -19.97030 -19.75926 -19.09369 -17.56104
-17.26965 -17.08171 -16.75336 -16.44565 -16.24832 -15.95965 -15.69130 -15.57367
-15.48233 -15.28790 -15.13268 -14.47064 -14.40085 -14.20915 -14.09338 -13.80662
-13.68216 -13.40134 -13.14930 -13.07995 -13.01506 -12.91009 -12.78449 -12.52373
-12.44398 -12.37404 -12.35621 -12.04804 -11.93320 -11.78794 -11.63383 -11.40507
-11.26307 -11.24210 -10.90072 -10.34113 -9.78565 -9.39538 -8.97542 -8.50317
-6.22374 0.39683 0.59125 0.63505 1.17924 1.31013 1.34742 1.51152
1.92578 2.27575 2.36947 2.72498 2.98889 3.09682 3.16528 3.39340
3.67039 4.00060 4.00567 4.03835 4.07264 4.12605 4.16608 4.24062
4.36476 4.43091 4.47855 4.60214 4.61435 4.73704 4.74103 4.78991
4.82608 4.89047 4.90318 4.99443 5.02963 5.07588 5.09652 5.13812
5.27866 5.28098 5.30366 5.37805 5.47290 5.59664 5.77152 5.81759
5.91964 6.07608 6.12713 6.18511 6.27474 6.36860 6.84552 6.88306
7.59887 8.61255
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.007396 B = 0.002580 C = 0.001985
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3784.863891 B =10849.260223 C =14099.991793
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.002 3.998
3 C -0.144 4.144
4 C -0.042 4.042
5 C -0.277 4.277
6 C 0.637 3.363
7 O -0.566 6.566
8 N -0.706 5.706
9 C 0.118 3.882
10 C 0.080 3.920
11 H 0.067 0.933
12 C -0.136 4.136
13 N -0.691 5.691
14 C 0.120 3.880
15 C -0.150 4.150
16 C -0.066 4.066
17 C -0.237 4.237
18 C 0.119 3.881
19 O -0.247 6.247
20 C -0.398 4.398
21 H 0.082 0.918
22 C 0.011 3.989
23 N -0.923 5.923
24 Si 0.968 3.032
25 H -0.267 1.267
26 H -0.267 1.267
27 H -0.264 1.264
28 C -0.196 4.196
29 C -0.049 4.049
30 H 0.054 0.946
31 H 0.092 0.908
32 H 0.053 0.947
33 H 0.124 0.876
34 H 0.061 0.939
35 H 0.092 0.908
36 H 0.053 0.947
37 H 0.411 0.589
38 H 0.069 0.931
39 H 0.086 0.914
40 H 0.073 0.927
41 H 0.056 0.944
42 H 0.065 0.935
43 H 0.337 0.663
44 H 0.093 0.907
45 H 0.050 0.950
46 H 0.136 0.864
47 H 0.107 0.893
48 H 0.284 0.716
49 H 0.124 0.876
50 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.997 11.948 7.151 23.553
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.016 4.016
3 C -0.202 4.202
4 C -0.045 4.045
5 C -0.280 4.280
6 C 0.425 3.575
7 O -0.447 6.447
8 N -0.357 5.357
9 C -0.005 4.005
10 C -0.029 4.029
11 H 0.085 0.915
12 C -0.194 4.194
13 N -0.325 5.325
14 C -0.008 4.008
15 C -0.151 4.151
16 C -0.085 4.085
17 C -0.256 4.256
18 C 0.070 3.930
19 O -0.155 6.155
20 C -0.474 4.474
21 H 0.099 0.901
22 C -0.188 4.188
23 N -0.564 5.564
24 Si 0.791 3.209
25 H -0.192 1.192
26 H -0.192 1.192
27 H -0.188 1.188
28 C -0.215 4.215
29 C -0.067 4.067
30 H 0.073 0.927
31 H 0.111 0.889
32 H 0.073 0.927
33 H 0.142 0.858
34 H 0.080 0.920
35 H 0.111 0.889
36 H 0.072 0.928
37 H 0.248 0.752
38 H 0.087 0.913
39 H 0.104 0.896
40 H 0.092 0.908
41 H 0.075 0.925
42 H 0.084 0.916
43 H 0.157 0.843
44 H 0.111 0.889
45 H 0.068 0.932
46 H 0.154 0.846
47 H 0.125 0.875
48 H 0.094 0.906
49 H 0.142 0.858
50 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 18.731 11.824 8.414 23.695
hybrid contribution -0.724 -0.122 -1.339 1.527
sum 18.007 11.702 7.075 22.611
Atomic orbital electron populations
1.21875 0.92189 1.02772 1.03706 1.18864 0.96637 0.96001 0.90087
1.21862 1.01660 0.92977 1.03659 1.23464 0.91543 0.95108 0.94366
1.20714 1.06548 1.03876 0.96824 1.14766 0.76618 0.82041 0.84092
1.90825 1.53761 1.67269 1.32811 1.45807 1.66556 1.07046 1.16335
1.21759 1.00619 0.91362 0.86739 1.21802 0.91296 0.91008 0.98839
0.91491 1.21731 1.01536 1.00518 0.95656 1.60586 1.20201 1.09495
1.42213 1.20744 0.91917 0.93041 0.95138 1.19681 0.99150 1.00706
0.95593 1.20948 0.93602 0.98121 0.95831 1.21250 0.98917 1.03099
1.02357 1.19709 0.86057 0.93453 0.93812 1.83520 1.33544 1.56663
1.41778 1.20702 1.02603 1.23107 1.00991 0.90054 1.25248 0.96849
0.99958 0.96729 1.69724 1.19780 1.43971 1.22894 0.85249 0.78286
0.78931 0.78456 1.19219 1.19173 1.18789 1.20541 0.99662 1.06180
0.95125 1.20921 0.92022 0.94862 0.98913 0.92661 0.88884 0.92745
0.85821 0.91989 0.88902 0.92770 0.75221 0.91269 0.89609 0.90772
0.92485 0.91563 0.84288 0.88918 0.93237 0.84649 0.87527 0.90603
0.85760 0.83248
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.92 9.15 71.98 0.66 -1.26 16
2 C 0.00 0.02 3.30 -12.60 -0.04 -0.02 16
3 C -0.14 -1.46 9.15 71.98 0.66 -0.80 16
4 C -0.04 -0.83 12.56 31.12 0.39 -0.44 16
5 C -0.28 -6.53 13.61 30.02 0.41 -6.12 16
6 C 0.64 16.03 7.65 85.49 0.65 16.69 16
7 O -0.57 -18.28 17.09 -4.08 -0.07 -18.35 16
8 N -0.71 -12.84 4.98 -470.75 -2.34 -15.19 16
9 C 0.12 1.90 5.31 86.38 0.46 2.36 16
10 C 0.08 1.05 2.81 44.91 0.13 1.18 16
11 H 0.07 0.72 7.80 -2.39 -0.02 0.70 16
12 C -0.14 -1.60 9.42 71.98 0.68 -0.92 16
13 N -0.69 -12.15 6.29 -495.58 -3.12 -15.27 16
14 C 0.12 2.16 5.61 85.56 0.48 2.64 16
15 C -0.15 -4.04 5.40 -19.84 -0.11 -4.15 16
16 C -0.07 -2.10 9.69 22.25 0.22 -1.88 16
17 C -0.24 -10.03 9.17 22.39 0.21 -9.82 16
18 C 0.12 5.47 6.65 22.58 0.15 5.62 16
19 O -0.25 -13.41 8.59 -22.78 -0.20 -13.61 16
20 C -0.40 -23.31 9.95 67.92 0.68 -22.63 16
21 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16
22 C 0.01 0.61 5.49 84.83 0.47 1.07 16
23 N -0.92 -54.79 13.96 21.61 0.30 -54.49 16
24 Si 0.97 45.43 28.62 68.60 1.96 47.39 16
25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
27 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16
28 C -0.20 -7.36 9.99 22.39 0.22 -7.14 16
29 C -0.05 -1.43 9.69 22.25 0.22 -1.21 16
30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16
31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16
32 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16
33 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16
34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
35 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16
36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16
37 H 0.41 6.00 7.34 -92.70 -0.68 5.32 16
38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16
40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16
41 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16
42 H 0.07 0.75 7.45 -2.39 -0.02 0.73 16
43 H 0.34 6.42 6.70 -89.70 -0.60 5.81 16
44 H 0.09 1.46 7.38 -2.39 -0.02 1.44 16
45 H 0.05 0.76 8.00 -2.39 -0.02 0.74 16
46 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16
47 H 0.11 5.00 5.64 -2.91 -0.02 4.98 16
48 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16
49 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16
50 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16
Total: -1.00 -73.33 423.21 2.73 -70.59
By element:
Atomic # 1 Polarization: 26.07 SS G_CDS: -0.32 Total: 25.75 kcal
Atomic # 6 Polarization: -33.35 SS G_CDS: 6.52 Total: -26.84 kcal
Atomic # 7 Polarization: -79.78 SS G_CDS: -5.16 Total: -84.94 kcal
Atomic # 8 Polarization: -31.69 SS G_CDS: -0.27 Total: -31.96 kcal
Atomic # 14 Polarization: 45.43 SS G_CDS: 1.96 Total: 47.39 kcal
Total: -73.33 2.73 -70.59 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001480458239.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.534 kcal
(2) G-P(sol) polarization free energy of solvation -73.327 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.794 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.594 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.060 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds