Wall clock time and date at job start Wed Apr 1 2020 03:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47241 * 2 1 4 4 C 1.52995 * 109.47192 * 119.99967 * 2 1 3 5 5 O 1.42894 * 109.47375 * 295.00051 * 4 2 1 6 6 C 1.42901 * 114.00022 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47065 * 179.97438 * 6 5 4 8 8 O 1.21287 * 120.00014 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00086 * 179.97438 * 7 6 5 10 10 C 1.47863 * 126.94398 * 359.97438 * 9 7 6 11 11 C 1.56017 * 105.10619 * 182.01975 * 10 9 7 12 12 H 1.09004 * 116.25262 * 158.83091 * 11 10 9 13 13 C 1.57087 * 99.60698 * 32.80274 * 11 10 9 14 14 C 1.49291 * 126.94455 * 180.02562 * 9 7 6 15 15 H 1.08994 * 116.15366 * 16.67761 * 14 9 7 16 16 C 1.56030 * 104.08969 * 246.67914 * 14 9 7 17 17 N 1.49061 * 105.20455 * 288.09605 * 16 14 9 18 18 C 1.36940 * 127.54756 * 182.01146 * 17 16 14 19 19 H 1.07994 * 120.00637 * 181.21629 * 18 17 16 20 20 C 1.38819 * 119.99517 * 1.21985 * 18 17 16 21 21 N 1.31620 * 119.99979 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 119.99866 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47346 * 59.99991 * 22 20 18 24 24 H 1.48503 * 109.46930 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47207 * 299.99436 * 22 20 18 26 26 C 1.50698 * 109.46870 * 240.00041 * 2 1 3 27 27 C 1.38235 * 120.00081 * 299.72833 * 26 2 1 28 28 C 1.38237 * 119.99865 * 179.74415 * 27 26 2 29 29 C 1.38227 * 120.00225 * 0.52649 * 28 27 26 30 30 C 1.38239 * 119.99969 * 359.74737 * 29 28 27 31 31 C 1.38230 * 119.99866 * 359.97438 * 30 29 28 32 32 H 1.08999 * 109.47088 * 59.99670 * 1 2 3 33 33 H 1.08988 * 109.47145 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46991 * 300.00225 * 1 2 3 35 35 H 1.08996 * 109.47216 * 174.99536 * 4 2 1 36 36 H 1.09004 * 109.46748 * 55.00204 * 4 2 1 37 37 H 1.09003 * 109.46905 * 60.00035 * 6 5 4 38 38 H 1.08996 * 109.47562 * 299.99569 * 6 5 4 39 39 H 1.09001 * 110.32061 * 63.11368 * 10 9 7 40 40 H 1.09002 * 110.39822 * 300.96998 * 10 9 7 41 41 H 1.09004 * 112.36292 * 64.27442 * 13 11 10 42 42 H 1.08997 * 112.36893 * 191.71020 * 13 11 10 43 43 H 1.09000 * 110.31326 * 47.67178 * 16 14 9 44 44 H 1.08995 * 110.31218 * 169.85759 * 16 14 9 45 45 H 0.96999 * 120.00214 * 180.02562 * 21 20 18 46 46 H 1.08003 * 119.99634 * 359.97438 * 27 26 2 47 47 H 1.08002 * 119.99866 * 180.29862 * 28 27 26 48 48 H 1.08000 * 120.00129 * 179.76645 * 29 28 27 49 49 H 1.08001 * 120.00211 * 179.97438 * 30 29 28 50 50 H 1.08001 * 120.00050 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 0.0167 2.4130 6 6 2.0914 -0.5745 3.6410 7 6 1.6414 0.2829 4.7958 8 8 1.0142 1.2999 4.5876 9 7 1.9350 -0.0810 6.0598 10 6 2.6842 -1.2818 6.4877 11 6 2.6815 -1.2285 8.0470 12 1 2.8591 -2.1726 8.5620 13 6 1.2832 -0.5530 8.2838 14 6 1.5685 0.6464 7.3110 15 1 0.7821 1.3954 7.2185 16 6 2.9371 1.1273 7.8855 17 7 3.6028 -0.1057 8.3938 18 6 4.8138 -0.2002 9.0259 19 1 5.1915 -1.1658 9.3281 20 6 5.5561 0.9453 9.2785 21 7 5.0956 2.1222 8.9108 22 14 7.2085 0.8165 10.1401 23 1 8.1221 -0.0326 9.3342 24 1 7.7960 2.1722 10.2890 25 1 7.0211 0.2076 11.4815 26 6 2.0323 -0.7104 -1.2305 27 6 1.7029 -2.0355 -1.4464 28 6 2.1593 -2.6856 -2.5778 29 6 2.9540 -2.0138 -3.4877 30 6 3.2880 -0.6904 -3.2690 31 6 2.8269 -0.0386 -2.1406 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0275 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 3.1263 -0.7995 1.2055 36 1 1.6054 -1.7198 1.2950 37 1 3.1788 -0.6501 3.6472 38 1 1.6575 -1.5698 3.7364 39 1 3.7059 -1.2451 6.1097 40 1 2.1846 -2.1856 6.1391 41 1 0.4578 -1.1772 7.9412 42 1 1.1489 -0.2278 9.3154 43 1 3.5333 1.5947 7.1018 44 1 2.7781 1.8247 8.7079 45 1 5.6145 2.9227 9.0868 46 1 1.0860 -2.5617 -0.7330 47 1 1.8980 -3.7194 -2.7489 48 1 3.3136 -2.5228 -4.3697 49 1 3.9092 -0.1656 -3.9797 50 1 3.0882 0.9952 -1.9694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494683627.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:37 Heat of formation + Delta-G solvation = 0.166342 kcal Electronic energy + Delta-G solvation = -29626.442267 eV Core-core repulsion = 25620.340090 eV Total energy + Delta-G solvation = -4006.102177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.10452 -39.82172 -38.38883 -37.17233 -34.69659 -33.61098 -31.66728 -31.20236 -29.86070 -29.30064 -28.58365 -27.69158 -26.03241 -25.20269 -23.51531 -23.38037 -22.67740 -20.72958 -20.32043 -19.85235 -18.50059 -17.32422 -17.30425 -16.63371 -16.38093 -16.10903 -15.75596 -15.24176 -15.22584 -14.95321 -14.50509 -14.13955 -13.91787 -13.77907 -13.56134 -13.47197 -13.21127 -12.99473 -12.59843 -12.27489 -12.18589 -12.08339 -11.88978 -11.70183 -11.58851 -11.30384 -11.26084 -11.05543 -11.02057 -10.87093 -10.84481 -10.79622 -10.60632 -10.30187 -10.11383 -9.72290 -9.64005 -9.37907 -9.20465 -8.99940 -8.73786 -8.03564 -6.95925 -5.79045 -3.13611 1.05087 1.11524 2.92011 3.02533 3.36039 3.40223 3.42581 3.49255 3.92576 4.39526 4.47610 4.56757 4.71860 4.75500 4.82054 4.85344 4.98230 5.08879 5.13972 5.15532 5.17404 5.21705 5.24810 5.26620 5.37629 5.39412 5.53868 5.54070 5.60813 5.70520 5.73275 5.74373 5.80345 5.86282 5.90049 6.10428 6.12457 6.21408 6.23118 6.25346 6.38575 6.38903 6.44116 6.56843 6.64720 6.71567 7.03712 7.38366 7.45137 7.67952 8.03405 8.06835 8.58833 9.05711 9.68239 10.38134 11.33649 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015126 B = 0.002082 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.656523 B =13443.365080 C =14306.082820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 H 0.089 0.911 4 C 0.069 3.931 5 O -0.360 6.360 6 C 0.052 3.948 7 C 0.529 3.471 8 O -0.535 6.535 9 N -0.608 5.608 10 C 0.080 3.920 11 C 0.141 3.859 12 H 0.106 0.894 13 C -0.151 4.151 14 C 0.102 3.898 15 H 0.115 0.885 16 C 0.172 3.828 17 N -0.597 5.597 18 C -0.232 4.232 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C -0.074 4.074 27 C -0.115 4.115 28 C -0.119 4.119 29 C -0.125 4.125 30 C -0.119 4.119 31 C -0.113 4.113 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.059 0.941 45 H 0.255 0.745 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.573 -10.596 -19.679 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 H 0.107 0.893 4 C -0.008 4.008 5 O -0.278 6.278 6 C -0.028 4.028 7 C 0.316 3.684 8 O -0.412 6.412 9 N -0.343 5.343 10 C -0.046 4.046 11 C 0.032 3.968 12 H 0.124 0.876 13 C -0.191 4.191 14 C 0.000 4.000 15 H 0.132 0.868 16 C 0.048 3.952 17 N -0.321 5.321 18 C -0.360 4.360 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.074 4.074 27 C -0.132 4.132 28 C -0.137 4.137 29 C -0.143 4.143 30 C -0.137 4.137 31 C -0.131 4.131 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.798 -9.655 -19.797 23.366 hybrid contribution 1.300 -0.351 0.279 1.375 sum -6.498 -10.006 -19.519 22.876 Atomic orbital electron populations 1.21793 0.93365 1.01996 1.02599 1.20065 0.97050 0.99875 0.89865 0.89258 1.22563 0.98759 0.94517 0.84929 1.87972 1.78289 1.49224 1.12330 1.22157 1.00002 0.96096 0.84550 1.19674 0.80205 0.86048 0.82426 1.90688 1.40733 1.25777 1.84028 1.49158 1.54569 1.25966 1.04636 1.23339 0.95667 0.85912 0.99677 1.23150 0.89793 0.93595 0.90300 0.87624 1.24169 0.97738 0.97537 0.99662 1.24330 0.99638 0.95017 0.81065 0.86752 1.22118 0.87242 0.88680 0.97208 1.45514 1.18913 1.00545 1.67168 1.18986 0.93083 0.93430 1.30521 0.90142 1.24830 0.98971 0.95346 1.01126 1.69893 1.38255 0.97231 1.51133 0.86191 0.83431 0.76658 0.79379 1.21193 1.21617 1.21076 1.19775 0.97465 0.94216 0.95914 1.21049 1.00186 0.94289 0.97724 1.21147 0.98118 0.99913 0.94558 1.21160 0.98759 0.94923 0.99497 1.21159 0.99992 0.94972 0.97568 1.21135 0.97508 1.00134 0.94356 0.92645 0.92778 0.90935 0.93037 0.93116 0.90475 0.90789 0.91103 0.92728 0.91665 0.89652 0.93550 0.92277 0.93476 0.86033 0.86095 0.86214 0.86048 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.91 37.16 0.33 -1.06 16 2 C -0.05 -0.51 2.80 -91.77 -0.26 -0.77 16 3 H 0.09 0.97 7.88 -51.93 -0.41 0.56 16 4 C 0.07 0.77 5.05 37.15 0.19 0.96 16 5 O -0.36 -5.42 9.41 -55.14 -0.52 -5.94 16 6 C 0.05 0.75 5.70 36.01 0.21 0.95 16 7 C 0.53 9.92 7.97 -10.99 -0.09 9.83 16 8 O -0.54 -12.03 16.85 -14.36 -0.24 -12.27 16 9 N -0.61 -11.13 2.95 -156.80 -0.46 -11.59 16 10 C 0.08 1.30 6.03 -1.68 -0.01 1.29 16 11 C 0.14 2.53 5.48 -62.53 -0.34 2.19 16 12 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 13 C -0.15 -2.51 6.80 -22.32 -0.15 -2.66 16 14 C 0.10 1.96 5.24 -62.57 -0.33 1.63 16 15 H 0.11 2.16 8.06 -51.93 -0.42 1.74 16 16 C 0.17 4.10 4.82 -1.00 0.00 4.10 16 17 N -0.60 -14.14 3.08 -155.34 -0.48 -14.62 16 18 C -0.23 -6.09 10.38 -15.06 -0.16 -6.25 16 19 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 21 N -0.92 -26.67 10.66 55.49 0.59 -26.07 16 22 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C -0.07 -0.69 4.78 -104.62 -0.50 -1.19 16 27 C -0.11 -0.98 8.76 -39.58 -0.35 -1.33 16 28 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 29 C -0.13 -0.96 10.05 -39.58 -0.40 -1.35 16 30 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 31 C -0.11 -1.01 9.67 -39.58 -0.38 -1.40 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.48 7.41 -51.94 -0.38 0.10 16 34 H 0.07 0.85 7.82 -51.93 -0.41 0.45 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.49 7.55 -51.93 -0.39 0.09 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.05 1.28 7.77 -51.93 -0.40 0.87 16 44 H 0.06 1.55 7.44 -51.93 -0.39 1.16 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.12 0.90 7.16 -52.48 -0.38 0.53 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 49 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 50 H 0.12 0.97 7.95 -52.49 -0.42 0.55 16 LS Contribution 404.48 15.07 6.10 6.10 Total: -1.00 -32.90 404.48 -11.38 -44.28 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.21 Total: 1.61 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -3.13 Total: 2.00 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.35 Total: -52.28 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.76 Total: -18.21 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.90 -11.38 -44.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494683627.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.450 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds