Wall clock time and date at job start Wed Apr 1 2020 03:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00024 * 2 1 4 4 C 1.52999 * 109.46806 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47049 * 176.14947 * 4 3 2 6 6 C 1.53002 * 109.47107 * 56.15449 * 4 3 2 7 7 N 1.46895 * 109.47564 * 296.15144 * 4 3 2 8 8 C 1.46844 * 110.99900 * 298.41673 * 7 4 3 9 9 C 1.53033 * 109.52656 * 174.15613 * 8 7 4 10 10 C 1.53126 * 109.27860 * 59.17593 * 9 8 7 11 11 C 1.53001 * 109.52360 * 182.43957 * 10 9 8 12 12 C 1.52995 * 109.47483 * 294.68567 * 11 10 9 13 13 N 1.46500 * 109.47015 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99817 * 179.97438 * 13 12 11 15 15 O 1.21287 * 120.00093 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00217 * 180.02562 * 14 13 12 17 17 S 1.80992 * 109.47305 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00071 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00044 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00018 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00400 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47447 * 89.99778 * 22 20 18 24 24 H 1.48497 * 109.47258 * 210.00124 * 22 20 18 25 25 H 1.48508 * 109.46934 * 329.99921 * 22 20 18 26 26 C 1.53114 * 109.15952 * 302.34661 * 10 9 8 27 27 C 1.46842 * 111.00492 * 174.20300 * 7 4 3 28 28 H 1.09007 * 109.47057 * 59.99973 * 1 2 3 29 29 H 1.08998 * 109.47626 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47123 * 299.99963 * 1 2 3 31 31 H 1.09004 * 109.47118 * 299.99746 * 3 2 1 32 32 H 1.08998 * 109.47052 * 60.00224 * 3 2 1 33 33 H 1.09004 * 109.46849 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47040 * 299.99233 * 6 4 3 35 35 H 1.09000 * 109.47344 * 60.00063 * 6 4 3 36 36 H 1.09005 * 109.46260 * 294.17411 * 8 7 4 37 37 H 1.09007 * 109.46901 * 54.13968 * 8 7 4 38 38 H 1.09004 * 109.50560 * 299.23570 * 9 8 7 39 39 H 1.08996 * 109.50882 * 179.11677 * 9 8 7 40 40 H 1.09001 * 109.51967 * 62.25602 * 10 9 8 41 41 H 1.09009 * 109.46668 * 54.68653 * 11 10 9 42 42 H 1.09001 * 109.46806 * 174.68052 * 11 10 9 43 43 H 1.08996 * 109.46909 * 300.00260 * 12 11 10 44 44 H 1.09001 * 109.47076 * 59.99623 * 12 11 10 45 45 H 0.96994 * 120.00134 * 0.02562 * 13 12 11 46 46 H 1.09000 * 109.46404 * 299.99698 * 16 14 13 47 47 H 1.09001 * 109.47044 * 59.99367 * 16 14 13 48 48 H 0.97000 * 120.00526 * 180.02562 * 21 20 18 49 49 H 1.08993 * 109.50963 * 297.71244 * 26 10 9 50 50 H 1.09003 * 109.50326 * 177.58908 * 26 10 9 51 51 H 1.08992 * 109.46137 * 305.85655 * 27 7 4 52 52 H 1.08995 * 109.46224 * 65.82568 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9786 2.1780 -0.0697 6 6 3.9799 0.3435 -1.1990 7 7 3.9760 0.5371 1.2422 8 6 3.5989 1.3370 2.4145 9 6 3.9420 0.5665 3.6914 10 6 5.4440 0.2695 3.7145 11 6 5.7834 -0.5535 4.9588 12 6 5.5250 0.2859 6.2116 13 7 5.8495 -0.5024 7.4030 14 6 5.6988 0.0364 8.6291 15 8 5.2950 1.1741 8.7462 16 6 6.0331 -0.7742 9.8548 17 16 5.7273 0.2187 11.3368 18 6 6.1868 -0.9403 12.5819 19 1 6.5315 -1.9249 12.3023 20 6 6.1068 -0.5876 13.9219 21 7 5.6872 0.6126 14.2627 22 14 6.5946 -1.8161 15.2418 23 1 8.0407 -1.6683 15.5456 24 1 5.8020 -1.5622 16.4716 25 1 6.3289 -3.1946 14.7575 26 6 5.8189 -0.5227 2.4590 27 6 5.4214 0.2795 1.2178 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 5.0666 0.2578 -1.1997 34 1 3.5368 -0.6500 -1.1300 35 1 3.6531 0.8240 -2.1213 36 1 4.1452 2.2802 2.4016 37 1 2.5277 1.5376 2.3882 38 1 3.3854 -0.3706 3.7116 39 1 3.6764 1.1670 4.5613 40 1 6.0003 1.2067 3.7336 41 1 5.1593 -1.4468 4.9849 42 1 6.8333 -0.8446 4.9266 43 1 6.1490 1.1792 6.1854 44 1 4.4751 0.5770 6.2437 45 1 6.1735 -1.4118 7.3094 46 1 5.4087 -1.6673 9.8810 47 1 7.0829 -1.0657 9.8224 48 1 5.6316 0.8592 15.1992 49 1 5.2920 -1.4768 2.4598 50 1 6.8944 -0.7003 2.4484 51 1 5.6740 -0.2880 0.3223 52 1 5.9592 1.2275 1.2105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495505637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:53 Heat of formation + Delta-G solvation = -95.274514 kcal Electronic energy + Delta-G solvation = -27494.198148 eV Core-core repulsion = 23619.401295 eV Total energy + Delta-G solvation = -3874.796852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.06526 -39.09920 -38.08081 -36.17674 -34.25175 -32.41200 -31.84591 -31.36448 -29.75074 -27.96836 -27.72232 -26.11580 -25.48149 -24.34463 -23.08609 -21.80059 -20.62878 -20.30629 -19.85325 -17.79651 -17.26333 -16.67956 -16.19036 -15.94222 -15.85979 -15.63706 -15.35631 -14.98694 -14.78840 -14.66562 -14.27416 -14.04864 -13.97342 -13.66239 -13.46180 -13.20727 -13.06143 -12.99763 -12.53459 -12.32015 -12.13058 -12.04521 -11.98227 -11.84127 -11.54001 -11.45351 -11.37934 -11.14472 -11.04790 -11.00632 -10.87436 -10.75172 -10.50454 -10.34021 -9.93892 -9.79440 -9.34600 -9.05290 -8.80942 -8.57973 -8.21210 -6.47850 -6.19923 -3.90301 3.07851 3.15135 3.23623 3.29469 3.34390 3.36788 3.52590 3.76313 4.22245 4.34416 4.45484 4.47976 4.55398 4.59837 4.83625 4.90790 4.94375 4.97009 4.98634 5.03041 5.08941 5.10982 5.15159 5.18415 5.23508 5.27798 5.31831 5.32629 5.34729 5.39783 5.44298 5.54767 5.62527 5.64235 5.71161 5.71891 5.83814 5.89954 5.92055 5.94566 5.98857 6.08539 6.17129 6.21875 6.68997 6.71334 6.80871 6.89951 7.61271 7.77166 8.36979 8.66880 9.25337 10.87511 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.001505 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.543750 B =18601.638893 C =19047.038262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.067 3.933 4 C 0.083 3.917 5 H 0.051 0.949 6 C -0.144 4.144 7 N -0.523 5.523 8 C 0.053 3.947 9 C -0.114 4.114 10 C -0.084 4.084 11 C -0.124 4.124 12 C 0.120 3.880 13 N -0.740 5.740 14 C 0.530 3.470 15 O -0.520 6.520 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.109 4.109 27 C 0.052 3.948 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.397 0.603 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 49 H 0.073 0.927 50 H 0.066 0.934 51 H 0.080 0.920 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 -1.720 -33.951 34.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.010 4.010 4 C -0.025 4.025 5 H 0.068 0.932 6 C -0.202 4.202 7 N -0.249 5.249 8 C -0.075 4.075 9 C -0.151 4.151 10 C -0.103 4.103 11 C -0.162 4.162 12 C -0.004 4.004 13 N -0.394 5.394 14 C 0.316 3.684 15 O -0.394 6.394 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.147 4.147 27 C -0.075 4.075 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.231 0.769 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.091 0.909 50 H 0.085 0.915 51 H 0.098 0.902 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.077 -0.293 -33.579 33.962 hybrid contribution 1.098 -1.414 0.631 1.898 sum -3.979 -1.707 -32.948 33.231 Atomic orbital electron populations 1.22738 0.81626 1.02731 0.99618 1.87993 1.18817 1.26783 1.95210 1.22611 0.93067 0.85451 0.99888 1.21658 0.93412 0.96431 0.91044 0.93165 1.21832 1.00964 1.01599 0.95773 1.61914 1.14596 1.47173 1.01190 1.22156 1.00658 0.94262 0.90394 1.21703 0.95689 1.01316 0.96428 1.21127 0.96525 0.98790 0.93887 1.21820 1.02142 0.98969 0.93282 1.21333 1.01158 0.94499 0.83417 1.46020 1.70001 1.17805 1.05577 1.20306 0.76856 0.87332 0.83862 1.90697 1.44100 1.18338 1.86258 1.23532 1.04543 1.03644 0.98694 1.85388 1.86764 1.19294 0.92012 1.22877 1.51344 1.01435 0.92718 0.90928 1.24990 0.94778 0.95901 0.97916 1.70019 1.43654 1.18649 1.17990 0.86168 0.78566 0.80593 0.80163 1.20282 1.20756 1.19701 1.21621 1.00626 0.99386 0.93094 1.22174 0.87368 0.98855 0.99152 0.94504 0.89656 0.94239 0.93222 0.93121 0.92483 0.90659 0.92504 0.95109 0.90694 0.90796 0.90999 0.91214 0.91085 0.91281 0.91922 0.91547 0.76896 0.89248 0.89267 0.92203 0.90854 0.91525 0.90206 0.95201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.18 9.80 -35.23 -0.35 -3.53 16 3 C 0.07 0.46 5.37 37.16 0.20 0.66 16 4 C 0.08 0.57 2.47 -67.71 -0.17 0.41 16 5 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 6 C -0.14 -0.91 8.60 37.16 0.32 -0.59 16 7 N -0.52 -4.18 4.46 -226.70 -1.01 -5.19 16 8 C 0.05 0.43 5.25 -3.84 -0.02 0.41 16 9 C -0.11 -0.96 5.08 -26.65 -0.14 -1.09 16 10 C -0.08 -0.66 2.25 -90.50 -0.20 -0.86 16 11 C -0.12 -1.03 4.80 -26.73 -0.13 -1.16 16 12 C 0.12 1.42 5.44 -4.04 -0.02 1.39 16 13 N -0.74 -10.12 5.56 -60.30 -0.33 -10.45 16 14 C 0.53 10.15 7.85 -10.98 -0.09 10.07 16 15 O -0.52 -12.10 15.86 5.55 0.09 -12.01 16 16 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 22 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.11 -0.78 5.38 -26.65 -0.14 -0.92 16 27 C 0.05 0.37 5.10 -3.83 -0.02 0.35 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.34 6.13 -51.93 -0.32 0.02 16 33 H 0.06 0.32 6.20 -51.93 -0.32 0.00 16 34 H 0.07 0.59 7.59 -51.93 -0.39 0.20 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.60 5.98 -51.93 -0.31 0.29 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.64 6.70 -51.93 -0.35 0.30 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.85 6.64 -51.93 -0.34 0.50 16 45 H 0.40 4.23 8.47 -40.82 -0.35 3.88 16 46 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 47 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 48 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.08 0.52 5.87 -51.93 -0.30 0.22 16 52 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 418.18 15.07 6.30 6.30 Total: -1.00 -34.96 418.18 -10.10 -45.06 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -9.42 Total: -1.10 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 1.13 Total: -6.08 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -0.61 Total: -41.27 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.26 Total: -15.54 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.96 -10.10 -45.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495505637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.217 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds