Wall clock time and date at job start Wed Apr 1 2020 03:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00024 * 2 1 4 4 C 1.52999 * 109.46806 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47049 * 176.14947 * 4 3 2 6 6 C 1.53002 * 109.47107 * 56.15449 * 4 3 2 7 7 N 1.46895 * 109.47564 * 296.15144 * 4 3 2 8 8 C 1.46844 * 110.99900 * 298.41673 * 7 4 3 9 9 C 1.53033 * 109.52656 * 174.15613 * 8 7 4 10 10 C 1.53126 * 109.27860 * 59.17593 * 9 8 7 11 11 C 1.53001 * 109.52360 * 182.43957 * 10 9 8 12 12 C 1.52995 * 109.47483 * 294.68567 * 11 10 9 13 13 N 1.46500 * 109.47015 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99817 * 179.97438 * 13 12 11 15 15 O 1.21287 * 120.00093 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00217 * 180.02562 * 14 13 12 17 17 S 1.80992 * 109.47305 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00071 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00044 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00018 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00400 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47447 * 89.99778 * 22 20 18 24 24 H 1.48497 * 109.47258 * 210.00124 * 22 20 18 25 25 H 1.48508 * 109.46934 * 329.99921 * 22 20 18 26 26 C 1.53114 * 109.15952 * 302.34661 * 10 9 8 27 27 C 1.46842 * 111.00492 * 174.20300 * 7 4 3 28 28 H 1.09007 * 109.47057 * 59.99973 * 1 2 3 29 29 H 1.08998 * 109.47626 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47123 * 299.99963 * 1 2 3 31 31 H 1.09004 * 109.47118 * 299.99746 * 3 2 1 32 32 H 1.08998 * 109.47052 * 60.00224 * 3 2 1 33 33 H 1.09004 * 109.46849 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47040 * 299.99233 * 6 4 3 35 35 H 1.09000 * 109.47344 * 60.00063 * 6 4 3 36 36 H 1.09005 * 109.46260 * 294.17411 * 8 7 4 37 37 H 1.09007 * 109.46901 * 54.13968 * 8 7 4 38 38 H 1.09004 * 109.50560 * 299.23570 * 9 8 7 39 39 H 1.08996 * 109.50882 * 179.11677 * 9 8 7 40 40 H 1.09001 * 109.51967 * 62.25602 * 10 9 8 41 41 H 1.09009 * 109.46668 * 54.68653 * 11 10 9 42 42 H 1.09001 * 109.46806 * 174.68052 * 11 10 9 43 43 H 1.08996 * 109.46909 * 300.00260 * 12 11 10 44 44 H 1.09001 * 109.47076 * 59.99623 * 12 11 10 45 45 H 0.96994 * 120.00134 * 0.02562 * 13 12 11 46 46 H 1.09000 * 109.46404 * 299.99698 * 16 14 13 47 47 H 1.09001 * 109.47044 * 59.99367 * 16 14 13 48 48 H 0.97000 * 120.00526 * 180.02562 * 21 20 18 49 49 H 1.08993 * 109.50963 * 297.71244 * 26 10 9 50 50 H 1.09003 * 109.50326 * 177.58908 * 26 10 9 51 51 H 1.08992 * 109.46137 * 305.85655 * 27 7 4 52 52 H 1.08995 * 109.46224 * 65.82568 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9786 2.1780 -0.0697 6 6 3.9799 0.3435 -1.1990 7 7 3.9760 0.5371 1.2422 8 6 3.5989 1.3370 2.4145 9 6 3.9420 0.5665 3.6914 10 6 5.4440 0.2695 3.7145 11 6 5.7834 -0.5535 4.9588 12 6 5.5250 0.2859 6.2116 13 7 5.8495 -0.5024 7.4030 14 6 5.6988 0.0364 8.6291 15 8 5.2950 1.1741 8.7462 16 6 6.0331 -0.7742 9.8548 17 16 5.7273 0.2187 11.3368 18 6 6.1868 -0.9403 12.5819 19 1 6.5315 -1.9249 12.3023 20 6 6.1068 -0.5876 13.9219 21 7 5.6872 0.6126 14.2627 22 14 6.5946 -1.8161 15.2418 23 1 8.0407 -1.6683 15.5456 24 1 5.8020 -1.5622 16.4716 25 1 6.3289 -3.1946 14.7575 26 6 5.8189 -0.5227 2.4590 27 6 5.4214 0.2795 1.2178 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 5.0666 0.2578 -1.1997 34 1 3.5368 -0.6500 -1.1300 35 1 3.6531 0.8240 -2.1213 36 1 4.1452 2.2802 2.4016 37 1 2.5277 1.5376 2.3882 38 1 3.3854 -0.3706 3.7116 39 1 3.6764 1.1670 4.5613 40 1 6.0003 1.2067 3.7336 41 1 5.1593 -1.4468 4.9849 42 1 6.8333 -0.8446 4.9266 43 1 6.1490 1.1792 6.1854 44 1 4.4751 0.5770 6.2437 45 1 6.1735 -1.4118 7.3094 46 1 5.4087 -1.6673 9.8810 47 1 7.0829 -1.0657 9.8224 48 1 5.6316 0.8592 15.1992 49 1 5.2920 -1.4768 2.4598 50 1 6.8944 -0.7003 2.4484 51 1 5.6740 -0.2880 0.3223 52 1 5.9592 1.2275 1.2105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495505637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:52 Heat of formation + Delta-G solvation = -119.838593 kcal Electronic energy + Delta-G solvation = -27495.263326 eV Core-core repulsion = 23619.401295 eV Total energy + Delta-G solvation = -3875.862031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.80584 -40.39957 -38.70548 -37.00231 -35.30893 -34.58158 -32.69274 -31.98267 -31.03113 -28.96472 -28.23348 -27.65369 -26.64106 -25.18009 -23.71432 -22.54850 -21.80589 -21.09415 -20.56547 -19.80229 -17.88986 -17.71265 -17.23103 -17.15040 -16.87524 -16.78444 -16.40263 -16.08684 -15.79777 -15.65003 -15.53605 -15.01072 -14.75676 -14.64087 -14.50718 -14.31200 -14.13097 -13.80696 -13.54544 -13.48431 -13.16369 -12.92820 -12.88627 -12.72626 -12.62237 -12.60768 -12.44216 -12.27016 -12.06653 -12.02449 -11.75955 -11.73243 -11.53406 -11.21601 -11.13983 -10.96619 -10.85643 -10.48030 -10.27524 -10.08090 -9.16124 -8.66786 -8.34328 -6.12728 1.27628 1.43014 1.47730 1.58343 1.62082 2.26950 2.32652 2.83724 2.99773 3.00874 3.32712 3.71593 3.81926 3.83974 3.94461 4.00680 4.04898 4.22141 4.30309 4.32757 4.36475 4.39591 4.40658 4.49230 4.51349 4.52550 4.56364 4.59498 4.62722 4.69553 4.75424 4.77558 4.87675 4.90818 4.91464 4.98339 5.04757 5.08273 5.13577 5.20596 5.27857 5.33611 5.42094 5.43482 5.48412 5.56788 6.16498 6.20133 6.23503 6.37844 6.53308 7.06840 7.26284 8.74951 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.001505 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.543750 B =18601.638893 C =19047.038262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.065 3.935 4 C 0.079 3.921 5 H 0.057 0.943 6 C -0.138 4.138 7 N -0.534 5.534 8 C 0.056 3.944 9 C -0.111 4.111 10 C -0.080 4.080 11 C -0.111 4.111 12 C 0.119 3.881 13 N -0.713 5.713 14 C 0.531 3.469 15 O -0.569 6.569 16 C -0.129 4.129 17 S -0.154 6.154 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 C -0.104 4.104 27 C 0.051 3.949 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.417 0.583 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.271 0.729 49 H 0.068 0.932 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 -3.786 -35.324 35.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.029 4.029 5 H 0.075 0.925 6 C -0.195 4.195 7 N -0.260 5.260 8 C -0.072 4.072 9 C -0.149 4.149 10 C -0.099 4.099 11 C -0.148 4.148 12 C -0.004 4.004 13 N -0.367 5.367 14 C 0.317 3.683 15 O -0.448 6.448 16 C -0.281 4.281 17 S 0.073 5.927 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.182 1.182 26 C -0.142 4.142 27 C -0.076 4.076 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.254 0.746 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.099 0.901 51 H 0.105 0.895 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.021 -2.403 -35.009 35.321 hybrid contribution 0.741 -0.764 0.904 1.396 sum -3.280 -3.167 -34.105 34.409 Atomic orbital electron populations 1.22841 0.80614 1.03298 1.00254 1.87953 1.20082 1.27796 1.95367 1.22684 0.93065 0.85010 1.00424 1.21741 0.93543 0.96794 0.90805 0.92514 1.21770 1.01240 1.00562 0.95941 1.61926 1.15196 1.47380 1.01450 1.22093 1.00493 0.94181 0.90443 1.21654 0.96222 1.00734 0.96310 1.21085 0.95850 0.98807 0.94156 1.21738 1.03309 0.98476 0.91313 1.21470 1.00329 0.94759 0.83849 1.45788 1.67936 1.18625 1.04332 1.20103 0.76709 0.86522 0.84993 1.90686 1.46721 1.20350 1.86999 1.23377 1.06233 1.02847 0.95613 1.85581 1.87473 1.22940 0.96656 1.23216 1.51384 1.01671 0.93223 0.89859 1.26138 0.94389 0.98007 1.00622 1.70185 1.44925 1.21019 1.18665 0.84939 0.78412 0.78058 0.76471 1.19271 1.20298 1.18182 1.21577 1.01395 0.98788 0.92400 1.22209 0.86893 0.98992 0.99506 0.93254 0.89202 0.94180 0.91847 0.93376 0.91803 0.92347 0.91468 0.95198 0.91027 0.91608 0.92015 0.91450 0.90249 0.89662 0.92886 0.92626 0.74629 0.87209 0.87131 0.91992 0.91373 0.90130 0.89496 0.95142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.39 -6.55 9.80 -148.98 -1.46 -8.01 16 3 C 0.07 0.84 5.37 71.98 0.39 1.23 16 4 C 0.08 1.01 2.47 44.92 0.11 1.13 16 5 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 6 C -0.14 -1.55 8.60 71.98 0.62 -0.93 16 7 N -0.53 -8.01 4.46 -871.14 -3.88 -11.90 16 8 C 0.06 0.87 5.25 86.32 0.45 1.32 16 9 C -0.11 -1.82 5.08 30.65 0.16 -1.67 16 10 C -0.08 -1.12 2.25 -10.71 -0.02 -1.15 16 11 C -0.11 -1.58 4.80 30.59 0.15 -1.43 16 12 C 0.12 2.67 5.44 86.38 0.47 3.14 16 13 N -0.71 -18.16 5.56 -463.06 -2.57 -20.74 16 14 C 0.53 19.99 7.85 87.66 0.69 20.68 16 15 O -0.57 -27.05 15.86 -3.05 -0.05 -27.10 16 16 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 17 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 18 C -0.55 -31.50 9.50 67.95 0.65 -30.85 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.38 13.22 21.65 0.29 -56.10 16 22 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 26 C -0.10 -1.25 5.38 30.65 0.16 -1.09 16 27 C 0.05 0.65 5.10 86.33 0.44 1.09 16 28 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.05 0.63 6.13 -2.39 -0.01 0.62 16 33 H 0.06 0.62 6.20 -2.38 -0.01 0.60 16 34 H 0.06 0.87 7.59 -2.39 -0.02 0.85 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.07 1.15 5.98 -2.38 -0.01 1.14 16 38 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.06 1.12 6.70 -2.39 -0.02 1.11 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.41 6.64 -2.39 -0.02 1.39 16 45 H 0.42 7.54 8.47 -92.71 -0.79 6.75 16 46 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 47 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 48 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 49 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.09 0.98 5.87 -2.39 -0.01 0.97 16 52 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -77.64 418.18 -0.30 -77.94 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.10 Total: 20.42 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 6.41 Total: -10.51 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -6.17 Total: -88.73 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -1.51 Total: -35.11 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -77.64 -0.30 -77.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495505637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.901 kcal (2) G-P(sol) polarization free energy of solvation -77.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds