Wall clock time and date at job start Wed Apr 1 2020 03:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99967 * 2 1 4 4 C 1.53001 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47238 * 174.99805 * 4 3 2 6 6 C 1.52998 * 109.47007 * 55.00080 * 4 3 2 7 7 N 1.46896 * 109.47381 * 294.99950 * 4 3 2 8 8 C 1.46897 * 111.00258 * 204.99710 * 7 4 3 9 9 H 1.09001 * 109.48452 * 324.97307 * 8 7 4 10 10 C 1.52876 * 109.48793 * 204.91981 * 8 7 4 11 11 C 1.53961 * 109.72894 * 167.13170 * 10 8 7 12 12 C 1.52445 * 110.72617 * 315.63261 * 11 10 8 13 13 C 1.53798 * 109.40313 * 113.73519 * 12 11 10 14 14 C 1.52335 * 109.15478 * 282.15683 * 13 12 11 15 15 N 1.46967 * 109.10827 * 72.70735 * 14 13 12 16 16 C 1.34776 * 120.36896 * 68.33508 * 15 14 13 17 17 O 1.21283 * 119.99492 * 355.09859 * 16 15 14 18 18 C 1.50691 * 120.00152 * 175.10264 * 16 15 14 19 19 S 1.81000 * 109.47204 * 185.06771 * 18 16 15 20 20 C 1.76202 * 100.00050 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00213 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00012 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99804 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00070 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47501 * 60.00393 * 24 22 20 26 26 H 1.48500 * 109.47421 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47255 * 300.00297 * 24 22 20 28 28 C 1.45340 * 119.26374 * 248.36162 * 15 14 13 29 29 H 1.08998 * 109.46806 * 59.99818 * 1 2 3 30 30 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46879 * 300.00533 * 1 2 3 32 32 H 1.09002 * 109.47328 * 299.99632 * 3 2 1 33 33 H 1.08997 * 109.47377 * 60.00153 * 3 2 1 34 34 H 1.09002 * 109.47479 * 60.00324 * 6 4 3 35 35 H 1.09000 * 109.47448 * 179.97438 * 6 4 3 36 36 H 1.08997 * 109.47440 * 299.99820 * 6 4 3 37 37 H 1.00899 * 111.00071 * 81.04286 * 7 4 3 38 38 H 1.09005 * 109.42618 * 287.21115 * 10 8 7 39 39 H 1.08998 * 109.42636 * 47.05073 * 10 8 7 40 40 H 1.09003 * 109.22097 * 195.31111 * 11 10 8 41 41 H 1.08994 * 109.19004 * 75.93713 * 11 10 8 42 42 H 1.08998 * 109.48658 * 353.75192 * 12 11 10 43 43 H 1.08997 * 109.48068 * 233.71023 * 12 11 10 44 44 H 1.09000 * 109.52183 * 162.25648 * 13 12 11 45 45 H 1.09003 * 109.58203 * 42.09525 * 13 12 11 46 46 H 1.08999 * 109.53515 * 312.81336 * 14 13 12 47 47 H 1.09008 * 109.53266 * 192.59049 * 14 13 12 48 48 H 1.09005 * 109.47026 * 305.06637 * 18 16 15 49 49 H 1.08998 * 109.47457 * 65.06569 * 18 16 15 50 50 H 0.97000 * 119.99695 * 179.97438 * 23 22 20 51 51 H 1.08998 * 109.67601 * 283.60547 * 28 15 14 52 52 H 1.09003 * 109.70303 * 163.09373 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1765 -0.0890 6 6 3.9790 0.3193 -1.1806 7 7 3.9769 0.5627 1.2561 8 6 5.3587 0.9454 1.5758 9 1 5.9325 1.0393 0.6539 10 6 5.9919 -0.1256 2.4642 11 6 7.5138 0.0947 2.5394 12 6 8.0842 0.3958 1.1581 13 6 8.6121 1.8400 1.1269 14 6 7.4370 2.7987 0.9828 15 7 6.6985 2.8488 2.2524 16 6 7.2573 3.4078 3.3441 17 8 8.4069 3.7926 3.3072 18 6 6.4539 3.5546 4.6105 19 16 7.4224 4.4676 5.8371 20 6 6.2762 4.4924 7.1751 21 1 5.3096 4.0229 7.0670 22 6 6.6160 5.1144 8.3685 23 7 7.7942 5.6862 8.5005 24 14 5.4012 5.1401 9.7873 25 1 5.0786 3.7471 10.1881 26 1 6.0004 5.8608 10.9391 27 1 4.1585 5.8333 9.3624 28 6 5.3591 2.2885 2.3179 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 3.6515 0.7808 -2.1123 35 1 5.0656 0.2336 -1.1805 36 1 3.5360 -0.6725 -1.0911 37 1 3.8797 -0.4408 1.2163 38 1 5.5666 -0.0635 3.4660 39 1 5.7884 -1.1110 2.0452 40 1 7.9873 -0.8037 2.9353 41 1 7.7221 0.9329 3.2043 42 1 7.3020 0.2783 0.4082 43 1 8.9003 -0.2942 0.9435 44 1 9.2881 1.9626 0.2807 45 1 9.1454 2.0541 2.0531 46 1 6.7758 2.4483 0.1902 47 1 7.8068 3.7942 0.7368 48 1 5.5338 4.0983 4.3961 49 1 6.2095 2.5672 5.0023 50 1 8.0315 6.1213 9.3344 51 1 4.6526 2.9699 1.8439 52 1 5.0764 2.1327 3.3590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566065010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:45 Heat of formation + Delta-G solvation = -78.912490 kcal Electronic energy + Delta-G solvation = -29706.618886 eV Core-core repulsion = 25832.531544 eV Total energy + Delta-G solvation = -3874.087342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52496 -38.74824 -37.65241 -35.86893 -34.20282 -33.08268 -32.39921 -30.41749 -28.89131 -27.62762 -26.89720 -26.37477 -25.83838 -25.40634 -23.00175 -22.03626 -20.81244 -20.04540 -18.76786 -17.67760 -17.01003 -16.48422 -16.35079 -16.18626 -16.10444 -15.45561 -14.92498 -14.77604 -14.69018 -14.41033 -14.30863 -13.98250 -13.65872 -13.46008 -13.28617 -13.07971 -12.95344 -12.65513 -12.53537 -12.36747 -12.13504 -11.98193 -11.78181 -11.74472 -11.43359 -11.32312 -11.19667 -11.08006 -11.01474 -11.00898 -10.73913 -10.70515 -10.52180 -10.39554 -9.91801 -9.78769 -9.23932 -9.02984 -8.62000 -8.30531 -8.19515 -6.46724 -6.18747 -3.88921 2.97520 3.09239 3.25685 3.28081 3.31243 3.52655 3.61324 3.92079 4.23459 4.50891 4.52915 4.69473 4.74235 4.85035 4.89939 4.96571 5.00628 5.02163 5.05124 5.08196 5.13461 5.16320 5.17983 5.31661 5.36612 5.37082 5.40250 5.48239 5.53720 5.58921 5.60263 5.65008 5.70246 5.73715 5.88083 5.88911 5.91116 5.97332 6.00560 6.13489 6.15406 6.20263 6.31171 6.42327 6.71618 6.82026 6.92475 7.18966 7.62167 7.65691 8.38169 8.62672 9.26575 10.88638 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.003030 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.143150 B = 9240.025136 C =11090.949742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.071 3.929 4 C 0.085 3.915 5 H 0.089 0.911 6 C -0.178 4.178 7 N -0.675 5.675 8 C 0.061 3.939 9 H 0.067 0.933 10 C -0.115 4.115 11 C -0.122 4.122 12 C -0.120 4.120 13 C -0.143 4.143 14 C 0.121 3.879 15 N -0.615 5.615 16 C 0.536 3.464 17 O -0.514 6.514 18 C -0.151 4.151 19 S -0.062 6.062 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.121 3.879 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.350 0.650 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.268 0.732 51 H 0.061 0.939 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 -13.107 -21.430 27.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.006 4.006 4 C -0.025 4.025 5 H 0.107 0.893 6 C -0.237 4.237 7 N -0.307 5.307 8 C -0.049 4.049 9 H 0.085 0.915 10 C -0.153 4.153 11 C -0.160 4.160 12 C -0.157 4.157 13 C -0.182 4.182 14 C -0.001 4.001 15 N -0.351 5.351 16 C 0.324 3.676 17 O -0.388 6.388 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.199 1.199 28 C -0.004 4.004 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.171 0.829 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.078 0.922 51 H 0.080 0.920 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.729 -12.031 -20.982 25.714 hybrid contribution -1.972 -0.836 0.308 2.164 sum -10.702 -12.867 -20.675 26.599 Atomic orbital electron populations 1.22698 0.81324 1.02511 0.99838 1.87845 1.19343 1.27924 1.95373 1.22599 0.92971 0.84827 1.00172 1.21659 0.93518 0.98760 0.88536 0.89267 1.22399 1.00917 1.01502 0.98854 1.60390 1.21913 1.15473 1.32935 1.22310 0.88451 0.95525 0.98620 0.91547 1.21881 0.95697 0.97225 1.00526 1.21723 0.94398 1.02217 0.97685 1.21771 0.99938 0.96675 0.97345 1.22114 0.97945 0.94232 1.03863 1.21391 0.93389 0.99911 0.85442 1.47784 1.16656 1.60230 1.10477 1.20227 0.87163 0.76320 0.83883 1.90681 1.17185 1.47834 1.83118 1.23572 1.03533 1.05374 0.97633 1.85356 1.21988 1.69822 1.06318 1.22821 1.03274 1.42359 0.99770 0.91013 1.24980 0.95843 0.94603 0.98116 1.70011 1.19749 1.34075 1.26536 0.86241 0.80477 0.78430 0.80460 1.19922 1.20851 1.19942 1.21480 0.83299 0.93156 1.02449 0.94472 0.89891 0.93995 0.93427 0.92295 0.92286 0.92930 0.91411 0.82942 0.90927 0.92223 0.92265 0.90930 0.91933 0.92373 0.91568 0.89494 0.90769 0.91311 0.89506 0.89303 0.92177 0.92037 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.36 9.77 -35.23 -0.34 -3.71 16 3 C 0.07 0.55 5.77 37.16 0.21 0.77 16 4 C 0.09 0.65 2.73 -67.72 -0.18 0.47 16 5 H 0.09 0.68 7.18 -51.93 -0.37 0.30 16 6 C -0.18 -1.23 8.95 37.16 0.33 -0.90 16 7 N -0.67 -5.82 6.01 -99.57 -0.60 -6.42 16 8 C 0.06 0.56 1.82 -67.55 -0.12 0.44 16 9 H 0.07 0.59 2.32 -51.93 -0.12 0.47 16 10 C -0.12 -1.14 5.18 -26.29 -0.14 -1.28 16 11 C -0.12 -1.39 5.40 -26.51 -0.14 -1.53 16 12 C -0.12 -1.21 5.49 -26.60 -0.15 -1.35 16 13 C -0.14 -1.69 5.54 -26.66 -0.15 -1.84 16 14 C 0.12 1.43 5.20 -4.13 -0.02 1.41 16 15 N -0.62 -8.51 1.68 -174.35 -0.29 -8.80 16 16 C 0.54 10.05 6.23 -10.99 -0.07 9.98 16 17 O -0.51 -11.45 14.44 5.55 0.08 -11.37 16 18 C -0.15 -3.10 4.56 36.00 0.16 -2.93 16 19 S -0.06 -1.68 20.58 -107.50 -2.21 -3.89 16 20 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 24 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 C 0.12 1.40 5.32 -4.43 -0.02 1.38 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.36 7.43 -51.93 -0.39 -0.03 16 36 H 0.07 0.52 7.55 -51.93 -0.39 0.13 16 37 H 0.35 3.00 7.90 -39.29 -0.31 2.69 16 38 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 39 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.06 5.38 -51.93 -0.28 0.78 16 42 H 0.06 0.55 5.47 -51.93 -0.28 0.27 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.34 6.04 -51.93 -0.31 1.03 16 46 H 0.07 0.68 6.07 -51.93 -0.32 0.37 16 47 H 0.07 0.88 8.13 -51.92 -0.42 0.46 16 48 H 0.09 1.69 8.04 -51.91 -0.42 1.27 16 49 H 0.09 1.72 7.59 -51.92 -0.39 1.33 16 50 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 51 H 0.06 0.68 7.39 -51.93 -0.38 0.30 16 52 H 0.09 1.16 5.89 -51.93 -0.31 0.86 16 LS Contribution 402.22 15.07 6.06 6.06 Total: -1.00 -33.01 402.22 -9.43 -42.44 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.86 Total: 1.80 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 1.03 Total: -7.04 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -0.16 Total: -40.81 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.26 Total: -15.08 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.01 -9.43 -42.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566065010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.477 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds