Wall clock time and date at job start Wed Apr 1 2020 03:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99967 * 2 1 4 4 C 1.53001 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47238 * 174.99805 * 4 3 2 6 6 C 1.52998 * 109.47007 * 55.00080 * 4 3 2 7 7 N 1.46896 * 109.47381 * 294.99950 * 4 3 2 8 8 C 1.46897 * 111.00258 * 204.99710 * 7 4 3 9 9 H 1.09001 * 109.48452 * 324.97307 * 8 7 4 10 10 C 1.52876 * 109.48793 * 204.91981 * 8 7 4 11 11 C 1.53961 * 109.72894 * 167.13170 * 10 8 7 12 12 C 1.52445 * 110.72617 * 315.63261 * 11 10 8 13 13 C 1.53798 * 109.40313 * 113.73519 * 12 11 10 14 14 C 1.52335 * 109.15478 * 282.15683 * 13 12 11 15 15 N 1.46967 * 109.10827 * 72.70735 * 14 13 12 16 16 C 1.34776 * 120.36896 * 68.33508 * 15 14 13 17 17 O 1.21283 * 119.99492 * 355.09859 * 16 15 14 18 18 C 1.50691 * 120.00152 * 175.10264 * 16 15 14 19 19 S 1.81000 * 109.47204 * 185.06771 * 18 16 15 20 20 C 1.76202 * 100.00050 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00213 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00012 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99804 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00070 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47501 * 60.00393 * 24 22 20 26 26 H 1.48500 * 109.47421 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47255 * 300.00297 * 24 22 20 28 28 C 1.45340 * 119.26374 * 248.36162 * 15 14 13 29 29 H 1.08998 * 109.46806 * 59.99818 * 1 2 3 30 30 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46879 * 300.00533 * 1 2 3 32 32 H 1.09002 * 109.47328 * 299.99632 * 3 2 1 33 33 H 1.08997 * 109.47377 * 60.00153 * 3 2 1 34 34 H 1.09002 * 109.47479 * 60.00324 * 6 4 3 35 35 H 1.09000 * 109.47448 * 179.97438 * 6 4 3 36 36 H 1.08997 * 109.47440 * 299.99820 * 6 4 3 37 37 H 1.00899 * 111.00071 * 81.04286 * 7 4 3 38 38 H 1.09005 * 109.42618 * 287.21115 * 10 8 7 39 39 H 1.08998 * 109.42636 * 47.05073 * 10 8 7 40 40 H 1.09003 * 109.22097 * 195.31111 * 11 10 8 41 41 H 1.08994 * 109.19004 * 75.93713 * 11 10 8 42 42 H 1.08998 * 109.48658 * 353.75192 * 12 11 10 43 43 H 1.08997 * 109.48068 * 233.71023 * 12 11 10 44 44 H 1.09000 * 109.52183 * 162.25648 * 13 12 11 45 45 H 1.09003 * 109.58203 * 42.09525 * 13 12 11 46 46 H 1.08999 * 109.53515 * 312.81336 * 14 13 12 47 47 H 1.09008 * 109.53266 * 192.59049 * 14 13 12 48 48 H 1.09005 * 109.47026 * 305.06637 * 18 16 15 49 49 H 1.08998 * 109.47457 * 65.06569 * 18 16 15 50 50 H 0.97000 * 119.99695 * 179.97438 * 23 22 20 51 51 H 1.08998 * 109.67601 * 283.60547 * 28 15 14 52 52 H 1.09003 * 109.70303 * 163.09373 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1765 -0.0890 6 6 3.9790 0.3193 -1.1806 7 7 3.9769 0.5627 1.2561 8 6 5.3587 0.9454 1.5758 9 1 5.9325 1.0393 0.6539 10 6 5.9919 -0.1256 2.4642 11 6 7.5138 0.0947 2.5394 12 6 8.0842 0.3958 1.1581 13 6 8.6121 1.8400 1.1269 14 6 7.4370 2.7987 0.9828 15 7 6.6985 2.8488 2.2524 16 6 7.2573 3.4078 3.3441 17 8 8.4069 3.7926 3.3072 18 6 6.4539 3.5546 4.6105 19 16 7.4224 4.4676 5.8371 20 6 6.2762 4.4924 7.1751 21 1 5.3096 4.0229 7.0670 22 6 6.6160 5.1144 8.3685 23 7 7.7942 5.6862 8.5005 24 14 5.4012 5.1401 9.7873 25 1 5.0786 3.7471 10.1881 26 1 6.0004 5.8608 10.9391 27 1 4.1585 5.8333 9.3624 28 6 5.3591 2.2885 2.3179 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 3.6515 0.7808 -2.1123 35 1 5.0656 0.2336 -1.1805 36 1 3.5360 -0.6725 -1.0911 37 1 3.8797 -0.4408 1.2163 38 1 5.5666 -0.0635 3.4660 39 1 5.7884 -1.1110 2.0452 40 1 7.9873 -0.8037 2.9353 41 1 7.7221 0.9329 3.2043 42 1 7.3020 0.2783 0.4082 43 1 8.9003 -0.2942 0.9435 44 1 9.2881 1.9626 0.2807 45 1 9.1454 2.0541 2.0531 46 1 6.7758 2.4483 0.1902 47 1 7.8068 3.7942 0.7368 48 1 5.5338 4.0983 4.3961 49 1 6.2095 2.5672 5.0023 50 1 8.0315 6.1213 9.3344 51 1 4.6526 2.9699 1.8439 52 1 5.0764 2.1327 3.3590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566065010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:44 Heat of formation + Delta-G solvation = -100.569156 kcal Electronic energy + Delta-G solvation = -29707.557989 eV Core-core repulsion = 25832.531544 eV Total energy + Delta-G solvation = -3875.026445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.65655 -39.58906 -38.61076 -36.68356 -35.34714 -34.58906 -33.90421 -31.55459 -30.08371 -28.15143 -27.90857 -27.69524 -27.17946 -26.41222 -24.03585 -22.91563 -21.49557 -21.03384 -20.24072 -19.32484 -18.11813 -17.51567 -17.38471 -17.07910 -16.88343 -16.82869 -16.26642 -16.03946 -15.77962 -15.52560 -15.32903 -15.10494 -14.84435 -14.52432 -14.29099 -14.05710 -14.01263 -13.76098 -13.60784 -13.41908 -13.17178 -13.06029 -12.87389 -12.78957 -12.68464 -12.62387 -12.57309 -12.19145 -11.98655 -11.94483 -11.84707 -11.74205 -11.57373 -11.47407 -11.25672 -11.13278 -10.71284 -10.48196 -10.28020 -9.56569 -9.22174 -8.67228 -8.34836 -6.12981 1.25420 1.43250 1.44954 1.54929 1.61568 2.11987 2.27588 2.99015 2.99838 3.11055 3.31532 3.60180 3.79902 3.82832 3.95571 4.02276 4.05010 4.15913 4.19901 4.22303 4.28920 4.41619 4.44668 4.45205 4.48522 4.55003 4.57547 4.60025 4.65311 4.70623 4.77095 4.82112 4.86658 4.91244 4.93420 4.98991 5.06064 5.07874 5.14681 5.22889 5.30917 5.36369 5.40291 5.40811 5.48089 5.70138 6.08591 6.19188 6.33975 6.37702 6.53725 7.06161 7.19429 8.74198 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.003030 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.143150 B = 9240.025136 C =11090.949742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.402 6.402 3 C 0.071 3.929 4 C 0.085 3.915 5 H 0.094 0.906 6 C -0.171 4.171 7 N -0.678 5.678 8 C 0.076 3.924 9 H 0.079 0.921 10 C -0.111 4.111 11 C -0.123 4.123 12 C -0.112 4.112 13 C -0.141 4.141 14 C 0.118 3.882 15 N -0.596 5.596 16 C 0.537 3.463 17 O -0.557 6.557 18 C -0.124 4.124 19 S -0.147 6.147 20 C -0.547 4.547 21 H 0.080 0.920 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.262 1.262 26 H -0.278 1.278 27 H -0.262 1.262 28 C 0.114 3.886 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.354 0.646 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.035 0.965 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.113 0.887 47 H 0.058 0.942 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.271 0.729 51 H 0.076 0.924 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.735 -14.622 -23.265 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C -0.007 4.007 4 C -0.025 4.025 5 H 0.112 0.888 6 C -0.230 4.230 7 N -0.312 5.312 8 C -0.034 4.034 9 H 0.096 0.904 10 C -0.149 4.149 11 C -0.161 4.161 12 C -0.149 4.149 13 C -0.179 4.179 14 C -0.004 4.004 15 N -0.330 5.330 16 C 0.324 3.676 17 O -0.436 6.436 18 C -0.275 4.275 19 S 0.081 5.919 20 C -0.695 4.695 21 H 0.098 0.902 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.187 1.187 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.010 4.010 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.174 0.826 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.131 0.869 47 H 0.076 0.924 48 H 0.118 0.882 49 H 0.117 0.883 50 H 0.080 0.920 51 H 0.094 0.906 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.143 -13.577 -22.864 28.831 hybrid contribution -1.276 -0.427 0.765 1.548 sum -12.419 -14.003 -22.098 28.960 Atomic orbital electron populations 1.22816 0.80405 1.03285 1.00266 1.87816 1.20450 1.28429 1.95471 1.22627 0.93094 0.84622 1.00311 1.21713 0.93464 0.99031 0.88283 0.88785 1.22322 1.01133 1.00860 0.98676 1.60313 1.21103 1.15805 1.33931 1.22085 0.89190 0.93694 0.98400 0.90364 1.21839 0.94398 0.98553 1.00121 1.21702 0.95735 1.00752 0.97918 1.21731 1.00841 0.95438 0.96880 1.22050 0.97950 0.95445 1.02494 1.21638 0.94069 0.99774 0.84889 1.47666 1.17339 1.58238 1.09786 1.19894 0.86407 0.76799 0.84474 1.90667 1.18807 1.50244 1.83840 1.23377 1.02787 1.04642 0.96703 1.85492 1.25307 1.71807 1.09339 1.23146 1.03449 1.42625 1.00236 0.90218 1.26113 0.97894 0.93780 1.01221 1.70176 1.22036 1.35030 1.27485 0.85026 0.77810 0.79025 0.76285 1.18703 1.20252 1.18607 1.21691 0.81973 0.94914 1.02390 0.93435 0.89037 0.94164 0.92144 0.93323 0.91614 0.92366 0.92200 0.82551 0.92391 0.90151 0.92136 0.94649 0.89610 0.91369 0.89657 0.93691 0.86909 0.92352 0.88188 0.88314 0.91966 0.90595 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -6.15 9.77 -148.98 -1.46 -7.61 16 3 C 0.07 0.93 5.77 71.98 0.42 1.34 16 4 C 0.08 1.03 2.73 44.92 0.12 1.15 16 5 H 0.09 1.07 7.18 -2.38 -0.02 1.05 16 6 C -0.17 -1.77 8.95 71.98 0.64 -1.12 16 7 N -0.68 -9.81 6.01 -468.92 -2.82 -12.62 16 8 C 0.08 1.21 1.82 45.02 0.08 1.29 16 9 H 0.08 1.07 2.32 -2.39 -0.01 1.06 16 10 C -0.11 -1.98 5.18 30.88 0.16 -1.82 16 11 C -0.12 -2.67 5.40 30.74 0.17 -2.50 16 12 C -0.11 -1.98 5.49 30.68 0.17 -1.81 16 13 C -0.14 -3.17 5.54 30.64 0.17 -3.01 16 14 C 0.12 2.58 5.20 86.07 0.45 3.03 16 15 N -0.60 -16.05 1.68 -823.92 -1.39 -17.44 16 16 C 0.54 20.66 6.23 87.65 0.55 21.20 16 17 O -0.56 -26.10 14.44 -3.04 -0.04 -26.14 16 18 C -0.12 -5.22 4.56 71.23 0.32 -4.90 16 19 S -0.15 -8.35 20.58 -56.49 -1.16 -9.52 16 20 C -0.55 -31.93 9.50 67.95 0.65 -31.28 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 22 C 0.01 0.85 5.49 84.86 0.47 1.32 16 23 N -0.91 -56.69 13.22 21.65 0.29 -56.40 16 24 Si 1.00 44.26 29.55 68.60 2.03 46.29 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 28 C 0.11 2.45 5.32 86.75 0.46 2.91 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.54 7.43 -2.39 -0.02 0.52 16 36 H 0.06 0.74 7.55 -2.39 -0.02 0.72 16 37 H 0.35 5.02 7.90 -89.69 -0.71 4.31 16 38 H 0.06 1.22 7.87 -2.38 -0.02 1.20 16 39 H 0.08 1.14 7.82 -2.39 -0.02 1.12 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.03 1.04 5.38 -2.39 -0.01 1.03 16 42 H 0.09 1.14 5.47 -2.39 -0.01 1.13 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.04 1.43 6.04 -2.39 -0.01 1.42 16 46 H 0.11 1.62 6.07 -2.39 -0.01 1.61 16 47 H 0.06 1.44 8.13 -2.38 -0.02 1.42 16 48 H 0.10 3.91 8.04 -2.39 -0.02 3.89 16 49 H 0.10 3.92 7.59 -2.40 -0.02 3.91 16 50 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 51 H 0.08 1.48 7.39 -2.39 -0.02 1.46 16 52 H 0.08 1.90 5.89 -2.39 -0.01 1.88 16 Total: -1.00 -75.28 402.22 1.72 -73.56 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.20 Total: 22.53 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 6.07 Total: -12.64 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -3.92 Total: -86.46 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.50 Total: -33.75 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -75.28 1.72 -73.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566065010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.008 kcal (2) G-P(sol) polarization free energy of solvation -75.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds