Wall clock time and date at job start Wed Apr 1 2020 03:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00058 * 2 1 4 4 C 1.53002 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47390 * 184.99817 * 4 3 2 6 6 C 1.53002 * 109.47183 * 304.99886 * 4 3 2 7 7 N 1.46906 * 109.47305 * 64.99869 * 4 3 2 8 8 C 1.46896 * 110.99743 * 85.56548 * 7 4 3 9 9 H 1.08999 * 109.52523 * 327.51023 * 8 7 4 10 10 C 1.53805 * 109.52182 * 207.38275 * 8 7 4 11 11 C 1.52444 * 109.43007 * 162.25920 * 10 8 7 12 12 C 1.53964 * 110.72213 * 113.72930 * 11 10 8 13 13 C 1.52864 * 109.72481 * 315.63444 * 12 11 10 14 14 C 1.53444 * 109.38212 * 287.12223 * 13 12 11 15 15 N 1.45332 * 108.41912 * 77.74461 * 14 13 12 16 16 C 1.34773 * 120.36189 * 223.35038 * 15 14 13 17 17 O 1.21285 * 120.00044 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00063 * 359.97438 * 16 15 14 19 19 S 1.81003 * 109.47138 * 180.02562 * 18 16 15 20 20 C 1.76191 * 99.99999 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00546 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00159 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00381 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99817 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47197 * 89.99863 * 24 22 20 26 26 H 1.48499 * 109.47202 * 210.00281 * 24 22 20 27 27 H 1.48500 * 109.47154 * 330.00361 * 24 22 20 28 28 C 1.46928 * 119.33345 * 43.37094 * 15 14 13 29 29 H 1.09001 * 109.46835 * 300.00161 * 1 2 3 30 30 H 1.09001 * 109.46965 * 59.99763 * 1 2 3 31 31 H 1.08999 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47443 * 60.00064 * 3 2 1 33 33 H 1.09004 * 109.47259 * 299.99772 * 3 2 1 34 34 H 1.09003 * 109.46973 * 305.20701 * 6 4 3 35 35 H 1.09002 * 109.46990 * 65.19983 * 6 4 3 36 36 H 1.08995 * 109.47399 * 185.20388 * 6 4 3 37 37 H 1.00900 * 110.99893 * 209.52268 * 7 4 3 38 38 H 1.09002 * 109.47358 * 282.24461 * 10 8 7 39 39 H 1.08996 * 109.47803 * 42.26511 * 10 8 7 40 40 H 1.09004 * 109.22302 * 234.04798 * 11 10 8 41 41 H 1.08997 * 109.23310 * 353.44813 * 11 10 8 42 42 H 1.09001 * 109.42270 * 75.71541 * 12 11 10 43 43 H 1.09000 * 109.42923 * 195.60651 * 12 11 10 44 44 H 1.09002 * 109.48738 * 47.09583 * 13 12 11 45 45 H 1.08999 * 109.48318 * 167.13150 * 13 12 11 46 46 H 1.09000 * 109.67876 * 197.47709 * 14 13 12 47 47 H 1.09004 * 109.67643 * 317.98181 * 14 13 12 48 48 H 1.08998 * 109.46942 * 299.99912 * 18 16 15 49 49 H 1.08995 * 109.46955 * 60.00446 * 18 16 15 50 50 H 0.97001 * 119.99899 * 179.97438 * 23 22 20 51 51 H 1.08994 * 109.58344 * 128.51755 * 28 15 14 52 52 H 1.08995 * 109.47668 * 8.27970 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1764 0.0889 6 6 3.9790 0.3193 1.1807 7 7 3.9769 0.5626 -1.2562 8 6 4.1319 1.5682 -2.3157 9 1 3.4002 2.3634 -2.1731 10 6 3.9124 0.9076 -3.6873 11 6 3.6349 1.9844 -4.7301 12 6 4.7764 2.0514 -5.7611 13 6 6.1244 1.9906 -5.0429 14 6 6.3817 3.3244 -4.3291 15 7 5.5926 3.3518 -3.1090 16 6 4.9185 4.4649 -2.7585 17 8 4.2616 4.4804 -1.7391 18 6 4.9808 5.6904 -3.6334 19 16 3.9800 7.0076 -2.8989 20 6 4.2255 8.2801 -4.0925 21 1 4.8486 8.0981 -4.9557 22 6 3.6173 9.5165 -3.9241 23 7 3.8012 10.4673 -4.8155 24 14 2.5379 9.8308 -2.4323 25 1 3.3688 10.3664 -1.3241 26 1 1.4845 10.8171 -2.7825 27 1 1.9025 8.5588 -2.0042 28 6 5.5373 2.1536 -2.2604 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.5731 0.7306 2.1049 35 1 3.6122 -0.6980 1.0439 36 1 5.0676 0.3088 1.2349 37 1 4.8320 0.0441 -1.1217 38 1 4.8056 0.3502 -3.9692 39 1 3.0622 0.2279 -3.6314 40 1 2.7008 1.7550 -5.2431 41 1 3.5436 2.9503 -4.2334 42 1 4.6935 1.2097 -6.4488 43 1 4.7059 2.9845 -6.3200 44 1 6.1104 1.1832 -4.3109 45 1 6.9158 1.8085 -5.7700 46 1 7.4401 3.4111 -4.0836 47 1 6.0862 4.1501 -4.9764 48 1 6.0149 6.0244 -3.7177 49 1 4.5948 5.4497 -4.6239 50 1 3.3758 11.3311 -4.6980 51 1 5.7799 2.4224 -1.2324 52 1 6.2535 1.4170 -2.6246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566065011.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:49 Heat of formation + Delta-G solvation = -78.514543 kcal Electronic energy + Delta-G solvation = -30057.164978 eV Core-core repulsion = 26183.094892 eV Total energy + Delta-G solvation = -3874.070085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.61799 -38.45881 -37.53333 -36.19952 -34.16828 -32.93739 -32.46111 -30.04556 -29.55156 -27.48174 -26.73593 -26.41840 -25.64718 -25.58693 -23.13855 -21.71972 -20.72725 -19.94644 -19.00591 -17.71345 -16.77254 -16.72702 -16.58307 -16.05201 -15.91021 -15.25282 -15.02033 -14.80997 -14.72573 -14.53755 -14.47730 -13.95923 -13.70049 -13.31631 -13.28620 -13.16966 -12.83739 -12.77156 -12.37129 -12.23741 -12.15236 -11.97146 -11.85210 -11.68922 -11.39249 -11.26642 -11.20427 -11.05730 -11.03461 -10.84247 -10.65957 -10.62538 -10.54117 -10.37787 -9.88156 -9.63095 -9.47335 -9.02655 -8.87995 -8.51673 -8.17910 -6.94295 -6.31191 -4.02867 2.68879 2.90232 3.17131 3.30643 3.47542 3.56193 3.79223 4.03203 4.30454 4.46436 4.60642 4.73938 4.79736 4.83850 4.87022 4.91767 4.94577 5.07955 5.09579 5.21263 5.23786 5.25474 5.28094 5.35645 5.39228 5.43961 5.45079 5.56084 5.58667 5.61937 5.64286 5.66166 5.72784 5.75454 5.77136 5.81524 5.89819 5.96074 6.00627 6.06854 6.13938 6.18805 6.27594 6.42159 6.54791 6.96160 7.21814 7.31588 7.47142 7.91894 8.39323 8.41494 9.15077 10.78113 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010224 B = 0.003526 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.000266 B = 7938.330396 C = 9566.770057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.075 3.925 4 C 0.084 3.916 5 H 0.068 0.932 6 C -0.148 4.148 7 N -0.666 5.666 8 C 0.066 3.934 9 H 0.094 0.906 10 C -0.106 4.106 11 C -0.123 4.123 12 C -0.116 4.116 13 C -0.146 4.146 14 C 0.105 3.895 15 N -0.608 5.608 16 C 0.533 3.467 17 O -0.519 6.519 18 C -0.122 4.122 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 C 0.095 3.905 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.337 0.663 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.271 0.729 51 H 0.065 0.935 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -23.594 4.159 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.002 4.002 4 C -0.026 4.026 5 H 0.086 0.914 6 C -0.206 4.206 7 N -0.297 5.297 8 C -0.045 4.045 9 H 0.112 0.888 10 C -0.144 4.144 11 C -0.161 4.161 12 C -0.154 4.154 13 C -0.184 4.184 14 C -0.019 4.019 15 N -0.344 5.344 16 C 0.321 3.679 17 O -0.393 6.393 18 C -0.272 4.272 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 C -0.030 4.030 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.155 0.845 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.081 0.919 51 H 0.083 0.917 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.954 -23.724 5.428 24.356 hybrid contribution 1.004 1.235 -0.571 1.691 sum 1.958 -22.489 4.858 23.091 Atomic orbital electron populations 1.22689 0.82057 1.02168 0.99685 1.87915 1.18531 1.27596 1.95274 1.22526 0.93247 0.84575 0.99851 1.21599 0.93788 0.97665 0.89533 0.91449 1.21850 1.00270 1.01333 0.97118 1.60625 1.37078 1.25786 1.06169 1.22271 0.96549 0.93803 0.91884 0.88794 1.21718 1.02112 0.97742 0.92843 1.21703 0.97903 0.99888 0.96627 1.21732 0.94133 1.01932 0.97600 1.22305 0.97984 0.97852 1.00260 1.21656 0.95107 0.99092 0.86000 1.47693 1.50142 1.12393 1.24182 1.20238 0.78343 0.83359 0.85994 1.90669 1.40180 1.82946 1.25544 1.23326 1.05337 0.96475 1.02095 1.84757 1.63184 1.07984 1.35663 1.22305 1.36513 0.98030 1.09987 0.89427 1.24705 0.95412 0.94747 0.96382 1.69935 1.42894 1.04183 1.34668 0.86744 0.81329 0.80734 0.83093 1.19224 1.19930 1.15980 1.22188 0.98470 0.87270 0.95065 0.94631 0.94324 0.90063 0.93519 0.93225 0.92149 0.90995 0.93090 0.84460 0.91686 0.91204 0.92382 0.91578 0.92153 0.91700 0.90059 0.91023 0.91919 0.89325 0.88725 0.88604 0.91932 0.91676 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.37 -4.57 9.87 -35.23 -0.35 -4.92 16 3 C 0.08 0.92 5.68 37.16 0.21 1.13 16 4 C 0.08 0.94 2.78 -67.71 -0.19 0.76 16 5 H 0.07 0.88 7.32 -51.93 -0.38 0.50 16 6 C -0.15 -1.39 8.88 37.16 0.33 -1.06 16 7 N -0.67 -7.01 6.02 -99.65 -0.60 -7.61 16 8 C 0.07 0.75 1.86 -67.63 -0.13 0.63 16 9 H 0.09 1.43 5.21 -51.93 -0.27 1.16 16 10 C -0.11 -1.10 5.11 -26.60 -0.14 -1.23 16 11 C -0.12 -1.38 5.40 -26.51 -0.14 -1.53 16 12 C -0.12 -1.09 5.75 -26.30 -0.15 -1.25 16 13 C -0.15 -1.20 5.45 -26.57 -0.14 -1.35 16 14 C 0.11 1.07 5.88 -4.44 -0.03 1.04 16 15 N -0.61 -7.72 1.68 -174.39 -0.29 -8.02 16 16 C 0.53 9.19 6.17 -10.99 -0.07 9.12 16 17 O -0.52 -10.54 14.60 5.55 0.08 -10.46 16 18 C -0.12 -2.33 4.54 36.00 0.16 -2.17 16 19 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 20 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.43 13.97 55.49 0.78 -25.66 16 24 Si 0.86 21.67 27.74 -169.99 -4.71 16.96 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 28 C 0.09 1.03 4.43 -4.14 -0.02 1.02 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.68 7.46 -51.93 -0.39 0.30 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.71 7.74 -51.93 -0.40 0.31 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.34 2.98 8.06 -39.29 -0.32 2.66 16 38 H 0.06 0.58 5.47 -51.93 -0.28 0.30 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.93 5.38 -51.93 -0.28 0.65 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.65 7.87 -51.93 -0.41 0.25 16 44 H 0.08 0.64 3.35 -51.93 -0.17 0.47 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.97 5.76 -51.93 -0.30 0.67 16 48 H 0.09 1.72 8.09 -51.92 -0.42 1.30 16 49 H 0.10 1.73 7.51 -51.92 -0.39 1.34 16 50 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 51 H 0.06 0.79 7.51 -51.93 -0.39 0.40 16 52 H 0.08 0.69 6.07 -51.93 -0.32 0.38 16 LS Contribution 400.57 15.07 6.04 6.04 Total: -1.00 -32.46 400.57 -8.97 -41.43 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.94 Total: 3.10 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 1.03 Total: -5.32 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.12 Total: -41.28 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.27 Total: -15.37 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.46 -8.97 -41.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566065011.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.084 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds