Wall clock time and date at job start Wed Apr 1 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00058 * 2 1 4 4 C 1.53002 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47390 * 184.99817 * 4 3 2 6 6 C 1.53002 * 109.47183 * 304.99886 * 4 3 2 7 7 N 1.46906 * 109.47305 * 64.99869 * 4 3 2 8 8 C 1.46896 * 110.99743 * 85.56548 * 7 4 3 9 9 H 1.08999 * 109.52523 * 327.51023 * 8 7 4 10 10 C 1.53805 * 109.52182 * 207.38275 * 8 7 4 11 11 C 1.52444 * 109.43007 * 162.25920 * 10 8 7 12 12 C 1.53964 * 110.72213 * 113.72930 * 11 10 8 13 13 C 1.52864 * 109.72481 * 315.63444 * 12 11 10 14 14 C 1.53444 * 109.38212 * 287.12223 * 13 12 11 15 15 N 1.45332 * 108.41912 * 77.74461 * 14 13 12 16 16 C 1.34773 * 120.36189 * 223.35038 * 15 14 13 17 17 O 1.21285 * 120.00044 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00063 * 359.97438 * 16 15 14 19 19 S 1.81003 * 109.47138 * 180.02562 * 18 16 15 20 20 C 1.76191 * 99.99999 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00546 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00159 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00381 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99817 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47197 * 89.99863 * 24 22 20 26 26 H 1.48499 * 109.47202 * 210.00281 * 24 22 20 27 27 H 1.48500 * 109.47154 * 330.00361 * 24 22 20 28 28 C 1.46928 * 119.33345 * 43.37094 * 15 14 13 29 29 H 1.09001 * 109.46835 * 300.00161 * 1 2 3 30 30 H 1.09001 * 109.46965 * 59.99763 * 1 2 3 31 31 H 1.08999 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47443 * 60.00064 * 3 2 1 33 33 H 1.09004 * 109.47259 * 299.99772 * 3 2 1 34 34 H 1.09003 * 109.46973 * 305.20701 * 6 4 3 35 35 H 1.09002 * 109.46990 * 65.19983 * 6 4 3 36 36 H 1.08995 * 109.47399 * 185.20388 * 6 4 3 37 37 H 1.00900 * 110.99893 * 209.52268 * 7 4 3 38 38 H 1.09002 * 109.47358 * 282.24461 * 10 8 7 39 39 H 1.08996 * 109.47803 * 42.26511 * 10 8 7 40 40 H 1.09004 * 109.22302 * 234.04798 * 11 10 8 41 41 H 1.08997 * 109.23310 * 353.44813 * 11 10 8 42 42 H 1.09001 * 109.42270 * 75.71541 * 12 11 10 43 43 H 1.09000 * 109.42923 * 195.60651 * 12 11 10 44 44 H 1.09002 * 109.48738 * 47.09583 * 13 12 11 45 45 H 1.08999 * 109.48318 * 167.13150 * 13 12 11 46 46 H 1.09000 * 109.67876 * 197.47709 * 14 13 12 47 47 H 1.09004 * 109.67643 * 317.98181 * 14 13 12 48 48 H 1.08998 * 109.46942 * 299.99912 * 18 16 15 49 49 H 1.08995 * 109.46955 * 60.00446 * 18 16 15 50 50 H 0.97001 * 119.99899 * 179.97438 * 23 22 20 51 51 H 1.08994 * 109.58344 * 128.51755 * 28 15 14 52 52 H 1.08995 * 109.47668 * 8.27970 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1764 0.0889 6 6 3.9790 0.3193 1.1807 7 7 3.9769 0.5626 -1.2562 8 6 4.1319 1.5682 -2.3157 9 1 3.4002 2.3634 -2.1731 10 6 3.9124 0.9076 -3.6873 11 6 3.6349 1.9844 -4.7301 12 6 4.7764 2.0514 -5.7611 13 6 6.1244 1.9906 -5.0429 14 6 6.3817 3.3244 -4.3291 15 7 5.5926 3.3518 -3.1090 16 6 4.9185 4.4649 -2.7585 17 8 4.2616 4.4804 -1.7391 18 6 4.9808 5.6904 -3.6334 19 16 3.9800 7.0076 -2.8989 20 6 4.2255 8.2801 -4.0925 21 1 4.8486 8.0981 -4.9557 22 6 3.6173 9.5165 -3.9241 23 7 3.8012 10.4673 -4.8155 24 14 2.5379 9.8308 -2.4323 25 1 3.3688 10.3664 -1.3241 26 1 1.4845 10.8171 -2.7825 27 1 1.9025 8.5588 -2.0042 28 6 5.5373 2.1536 -2.2604 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.5731 0.7306 2.1049 35 1 3.6122 -0.6980 1.0439 36 1 5.0676 0.3088 1.2349 37 1 4.8320 0.0441 -1.1217 38 1 4.8056 0.3502 -3.9692 39 1 3.0622 0.2279 -3.6314 40 1 2.7008 1.7550 -5.2431 41 1 3.5436 2.9503 -4.2334 42 1 4.6935 1.2097 -6.4488 43 1 4.7059 2.9845 -6.3200 44 1 6.1104 1.1832 -4.3109 45 1 6.9158 1.8085 -5.7700 46 1 7.4401 3.4111 -4.0836 47 1 6.0862 4.1501 -4.9764 48 1 6.0149 6.0244 -3.7177 49 1 4.5948 5.4497 -4.6239 50 1 3.3758 11.3311 -4.6980 51 1 5.7799 2.4224 -1.2324 52 1 6.2535 1.4170 -2.6246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566065011.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:48 Heat of formation + Delta-G solvation = -100.004360 kcal Electronic energy + Delta-G solvation = -30058.096846 eV Core-core repulsion = 26183.094892 eV Total energy + Delta-G solvation = -3875.001954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70976 -39.46501 -38.63252 -37.10727 -35.20754 -34.69698 -33.80357 -31.39388 -30.49770 -28.32941 -27.99763 -27.60131 -27.28293 -26.50127 -24.12512 -22.59657 -21.65854 -20.98043 -20.32468 -19.41416 -18.09152 -17.73782 -17.58582 -17.18758 -17.04502 -16.85555 -16.17654 -15.96644 -15.87525 -15.62761 -15.43697 -15.36348 -14.93022 -14.74062 -14.31845 -14.30405 -14.11858 -13.63094 -13.62449 -13.39851 -13.15005 -13.08344 -13.04089 -12.90547 -12.69050 -12.66873 -12.52264 -12.20521 -12.00876 -11.90181 -11.89329 -11.73166 -11.47362 -11.46384 -11.28229 -11.19730 -10.80985 -10.55987 -10.54716 -9.87754 -9.16075 -9.01468 -8.54199 -6.24847 0.95313 1.28012 1.42990 1.51457 1.53594 2.06963 2.22059 2.66239 2.84109 2.90259 3.14145 3.52939 3.76245 3.87021 3.95364 4.01421 4.02644 4.07893 4.12391 4.14028 4.32220 4.34938 4.37641 4.41762 4.47874 4.51441 4.53515 4.57779 4.60887 4.71118 4.72907 4.76962 4.82709 4.84673 4.93477 5.00795 5.03522 5.11189 5.15491 5.23332 5.33886 5.38826 5.41769 5.56166 5.58780 5.68255 6.03696 6.08648 6.29331 6.30590 6.56490 6.91087 7.10660 8.58389 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010224 B = 0.003526 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.000266 B = 7938.330396 C = 9566.770057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.385 6.385 3 C 0.077 3.923 4 C 0.086 3.914 5 H 0.045 0.955 6 C -0.139 4.139 7 N -0.662 5.662 8 C 0.074 3.926 9 H 0.052 0.948 10 C -0.096 4.096 11 C -0.123 4.123 12 C -0.115 4.115 13 C -0.136 4.136 14 C 0.094 3.906 15 N -0.592 5.592 16 C 0.534 3.466 17 O -0.557 6.557 18 C -0.106 4.106 19 S -0.174 6.174 20 C -0.528 4.528 21 H 0.061 0.939 22 C 0.048 3.952 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.258 1.258 27 H -0.239 1.239 28 C 0.096 3.904 29 H 0.044 0.956 30 H 0.033 0.967 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.024 0.976 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.351 0.649 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.106 0.894 49 H 0.104 0.896 50 H 0.277 0.723 51 H 0.054 0.946 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 -26.333 4.433 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.304 6.304 3 C 0.000 4.000 4 C -0.023 4.023 5 H 0.063 0.937 6 C -0.196 4.196 7 N -0.294 5.294 8 C -0.037 4.037 9 H 0.070 0.930 10 C -0.134 4.134 11 C -0.162 4.162 12 C -0.152 4.152 13 C -0.174 4.174 14 C -0.028 4.028 15 N -0.326 5.326 16 C 0.321 3.679 17 O -0.435 6.435 18 C -0.257 4.257 19 S 0.053 5.947 20 C -0.676 4.676 21 H 0.079 0.921 22 C -0.158 4.158 23 N -0.554 5.554 24 Si 0.735 3.265 25 H -0.186 1.186 26 H -0.182 1.182 27 H -0.163 1.163 28 C -0.028 4.028 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.171 0.829 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.125 0.875 49 H 0.123 0.877 50 H 0.087 0.913 51 H 0.073 0.927 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.324 -26.498 5.672 27.198 hybrid contribution 0.622 1.972 -0.748 2.199 sum 2.946 -24.526 4.924 25.188 Atomic orbital electron populations 1.22859 0.80825 1.03529 0.99884 1.87882 1.19952 1.27239 1.95279 1.22463 0.94203 0.84625 0.98732 1.21507 0.92978 0.97106 0.90757 0.93665 1.21772 1.01286 1.00501 0.96055 1.60589 1.37877 1.25333 1.05607 1.22070 0.95726 0.93040 0.92834 0.92979 1.21640 1.02884 0.97165 0.91681 1.21690 0.98854 0.98422 0.97199 1.21738 0.94042 1.02200 0.97266 1.22271 0.97876 0.96519 1.00695 1.21977 0.95799 1.00276 0.84796 1.47642 1.48610 1.11386 1.24917 1.19875 0.78863 0.83978 0.85220 1.90661 1.42152 1.83644 1.27037 1.23283 1.04556 0.95424 1.02417 1.84666 1.65278 1.09241 1.35531 1.22444 1.35800 0.99391 1.09944 0.92058 1.25534 0.96659 0.94620 0.98987 1.70011 1.44154 1.04877 1.36395 0.85891 0.80062 0.80684 0.79879 1.18619 1.18247 1.16281 1.22347 0.99004 0.86941 0.94488 0.93748 0.94837 0.88120 0.93315 0.95763 0.92038 0.91174 0.91440 0.82891 0.89065 0.92145 0.92989 0.94873 0.90318 0.92788 0.88999 0.88285 0.89547 0.90372 0.87542 0.87747 0.91334 0.92722 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.38 -9.25 9.87 -148.98 -1.47 -10.72 16 3 C 0.08 1.95 5.68 71.98 0.41 2.36 16 4 C 0.09 1.94 2.78 44.92 0.12 2.06 16 5 H 0.05 1.22 7.32 -2.39 -0.02 1.21 16 6 C -0.14 -2.40 8.88 71.98 0.64 -1.76 16 7 N -0.66 -13.18 6.02 -469.17 -2.83 -16.01 16 8 C 0.07 1.65 1.86 44.97 0.08 1.73 16 9 H 0.05 1.66 5.21 -2.39 -0.01 1.64 16 10 C -0.10 -1.82 5.11 30.68 0.16 -1.66 16 11 C -0.12 -2.68 5.40 30.74 0.17 -2.52 16 12 C -0.11 -1.88 5.75 30.87 0.18 -1.70 16 13 C -0.14 -1.69 5.45 30.70 0.17 -1.53 16 14 C 0.09 1.65 5.88 86.75 0.51 2.16 16 15 N -0.59 -14.21 1.68 -824.03 -1.39 -15.59 16 16 C 0.53 18.51 6.17 87.66 0.54 19.05 16 17 O -0.56 -23.32 14.60 -3.04 -0.04 -23.37 16 18 C -0.11 -4.10 4.54 71.24 0.32 -3.77 16 19 S -0.17 -8.87 18.55 -56.49 -1.05 -9.91 16 20 C -0.53 -30.94 10.04 67.96 0.68 -30.26 16 21 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 22 C 0.05 2.80 5.50 84.86 0.47 3.27 16 23 N -0.92 -55.97 13.97 21.65 0.30 -55.67 16 24 Si 0.91 45.28 27.74 68.60 1.90 47.19 16 25 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 27 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 28 C 0.10 1.90 4.43 86.08 0.38 2.28 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.02 0.72 7.46 -2.38 -0.02 0.70 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.26 7.74 -2.39 -0.02 1.24 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.35 5.28 8.06 -89.69 -0.72 4.56 16 38 H 0.09 1.25 5.47 -2.39 -0.01 1.24 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.03 0.94 5.38 -2.39 -0.01 0.93 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.05 1.01 7.87 -2.39 -0.02 0.99 16 44 H 0.09 0.97 3.35 -2.39 -0.01 0.96 16 45 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.08 1.57 5.76 -2.38 -0.01 1.56 16 48 H 0.11 3.85 8.09 -2.40 -0.02 3.83 16 49 H 0.10 3.84 7.51 -2.40 -0.02 3.82 16 50 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 51 H 0.05 1.25 7.51 -2.39 -0.02 1.23 16 52 H 0.12 1.50 6.07 -2.39 -0.01 1.48 16 Total: -1.00 -73.36 400.57 1.66 -71.70 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.15 Total: 20.93 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 6.08 Total: -8.55 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -3.91 Total: -87.27 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.52 Total: -34.08 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.05 Total: -9.91 kcal Total: -73.36 1.66 -71.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566065011.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.300 kcal (2) G-P(sol) polarization free energy of solvation -73.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds