Wall clock time and date at job start Wed Apr 1 2020 03:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00513 * 2 1 4 4 C 1.53002 * 109.47301 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47122 * 176.08106 * 4 3 2 6 6 C 1.52999 * 109.46735 * 56.08531 * 4 3 2 7 7 N 1.46900 * 109.47375 * 296.08440 * 4 3 2 8 8 C 1.46842 * 110.99489 * 174.11924 * 7 4 3 9 9 C 1.53044 * 109.52059 * 185.80250 * 8 7 4 10 10 C 1.53117 * 109.30769 * 300.87828 * 9 8 7 11 11 C 1.53002 * 109.52679 * 297.66669 * 10 9 8 12 12 C 1.53001 * 109.52126 * 177.53857 * 10 9 8 13 13 N 1.46502 * 109.47158 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00062 * 180.02562 * 13 12 10 15 15 O 1.21285 * 119.99823 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99915 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.46945 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00044 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99711 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00075 * 179.97438 * 18 17 16 21 21 N 1.31631 * 120.00255 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00029 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47259 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47197 * 119.99854 * 22 20 18 25 25 H 1.48495 * 109.47351 * 239.99840 * 22 20 18 26 26 C 1.53123 * 109.15942 * 57.63850 * 10 9 8 27 27 C 1.46849 * 110.99855 * 298.37151 * 7 4 3 28 28 H 1.08994 * 109.47510 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46806 * 299.99738 * 1 2 3 30 30 H 1.08997 * 109.47342 * 59.99670 * 1 2 3 31 31 H 1.09000 * 109.46856 * 60.00036 * 3 2 1 32 32 H 1.09002 * 109.46888 * 300.00488 * 3 2 1 33 33 H 1.09004 * 109.47122 * 180.02562 * 6 4 3 34 34 H 1.09005 * 109.47081 * 299.99601 * 6 4 3 35 35 H 1.08994 * 109.47492 * 60.00166 * 6 4 3 36 36 H 1.08994 * 109.43533 * 65.80851 * 8 7 4 37 37 H 1.09004 * 109.49559 * 305.83304 * 8 7 4 38 38 H 1.09003 * 109.50125 * 180.92187 * 9 8 7 39 39 H 1.08995 * 109.50256 * 60.84033 * 9 8 7 40 40 H 1.08999 * 109.46650 * 59.99790 * 11 10 9 41 41 H 1.09000 * 109.47137 * 180.02562 * 11 10 9 42 42 H 1.09001 * 109.46807 * 300.00197 * 11 10 9 43 43 H 1.08997 * 109.47372 * 300.00334 * 12 10 9 44 44 H 1.09009 * 109.46726 * 60.00379 * 12 10 9 45 45 H 0.96995 * 119.99805 * 0.02562 * 13 12 10 46 46 H 1.09000 * 109.46769 * 299.99356 * 16 14 13 47 47 H 1.08999 * 109.47322 * 60.00003 * 16 14 13 48 48 H 0.96998 * 120.00332 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.50242 * 62.28458 * 26 10 9 50 50 H 1.09002 * 109.50155 * 182.35933 * 26 10 9 51 51 H 1.08995 * 109.46144 * 54.14110 * 27 7 4 52 52 H 1.09002 * 109.45246 * 294.16781 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9787 2.1778 -0.0696 6 6 3.9807 0.3416 -1.1961 7 7 3.9751 0.5390 1.2448 8 6 5.4202 0.2796 1.2209 9 6 5.8170 -0.5199 2.4641 10 6 5.4420 0.2748 3.7181 11 6 6.2249 1.5891 3.7437 12 6 5.7804 -0.5463 4.9639 13 7 5.4207 0.2148 6.1630 14 6 5.6309 -0.3136 7.3849 15 8 6.1174 -1.4195 7.4918 16 6 5.2603 0.4691 8.6182 17 16 5.6622 -0.5016 10.0921 18 6 5.1406 0.6188 11.3480 19 1 4.7215 1.5765 11.0770 20 6 5.2685 0.2706 12.6854 21 7 5.7788 -0.8969 13.0157 22 14 4.7162 1.4587 14.0169 23 1 4.1814 2.6931 13.3880 24 1 3.6552 0.8229 14.8387 25 1 5.8722 1.8045 14.8824 26 6 3.9402 0.5726 3.6939 27 6 3.5980 1.3412 2.4156 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 5.0673 0.2551 -1.1955 34 1 3.5375 -0.6518 -1.1259 35 1 3.6546 0.8206 -2.1193 36 1 5.9586 1.2272 1.2115 37 1 5.6727 -0.2904 0.3267 38 1 6.8923 -0.6981 2.4543 39 1 5.2899 -1.4739 2.4668 40 1 5.9815 2.1743 2.8569 41 1 5.9577 2.1539 4.6368 42 1 7.2936 1.3752 3.7557 43 1 5.2206 -1.4813 4.9460 44 1 6.8488 -0.7625 4.9774 45 1 5.0313 1.0990 6.0774 46 1 5.8192 1.4047 8.6363 47 1 4.1918 0.6842 8.6046 48 1 5.8678 -1.1405 13.9504 49 1 3.3831 -0.3640 3.7156 50 1 3.6745 1.1742 4.5632 51 1 2.5271 1.5424 2.3884 52 1 4.1451 2.2839 2.4012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569697737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:00 Heat of formation + Delta-G solvation = -110.193884 kcal Electronic energy + Delta-G solvation = -28491.055927 eV Core-core repulsion = 24615.612122 eV Total energy + Delta-G solvation = -3875.443805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.34990 -40.30381 -38.86002 -37.04692 -34.78623 -34.57773 -32.32351 -31.90308 -30.73732 -28.27936 -28.21112 -27.77133 -27.17103 -26.43924 -23.81754 -23.25607 -21.67357 -21.08248 -19.91144 -19.30799 -18.04727 -17.59521 -17.30354 -17.00401 -16.87846 -16.68255 -16.36547 -16.01137 -15.84562 -15.65571 -15.40415 -15.09534 -14.86821 -14.68462 -14.50555 -14.27781 -14.02071 -13.72930 -13.52849 -13.23711 -13.15907 -12.95236 -12.90793 -12.82219 -12.63486 -12.61152 -12.53272 -12.32557 -12.06192 -12.02582 -11.76175 -11.72543 -11.50536 -11.26516 -11.15849 -11.01999 -10.88550 -10.45782 -10.26723 -10.08834 -9.06269 -8.66564 -8.34589 -6.12640 1.27404 1.41505 1.47531 1.58614 1.63077 2.26391 2.32372 2.85867 2.99488 3.02932 3.32758 3.61363 3.68957 3.79508 3.98957 4.00300 4.07077 4.19396 4.29777 4.31996 4.40752 4.41604 4.43862 4.50508 4.52551 4.55231 4.57389 4.60555 4.70734 4.76209 4.76761 4.80258 4.82218 4.89236 4.92346 4.94527 5.07566 5.08617 5.13228 5.14545 5.28492 5.34049 5.42248 5.45117 5.47201 5.52870 6.20274 6.20299 6.26053 6.41475 6.50970 7.06674 7.25695 8.74910 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.001883 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.126910 B =14866.678738 C =15546.060275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.065 3.935 4 C 0.082 3.918 5 H 0.063 0.937 6 C -0.140 4.140 7 N -0.537 5.537 8 C 0.057 3.943 9 C -0.101 4.101 10 C -0.060 4.060 11 C -0.143 4.143 12 C 0.134 3.866 13 N -0.708 5.708 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.129 4.129 17 S -0.153 6.153 18 C -0.544 4.544 19 H 0.083 0.917 20 C 0.011 3.989 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.103 4.103 27 C 0.058 3.942 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.413 0.587 46 H 0.110 0.890 47 H 0.109 0.891 48 H 0.271 0.729 49 H 0.057 0.943 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 10.586 -32.598 34.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C -0.012 4.012 4 C -0.026 4.026 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.263 5.263 8 C -0.070 4.070 9 C -0.140 4.140 10 C -0.060 4.060 11 C -0.200 4.200 12 C 0.010 3.990 13 N -0.363 5.363 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.280 4.280 17 S 0.074 5.926 18 C -0.692 4.692 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.141 4.141 27 C -0.070 4.070 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.251 0.749 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.091 0.909 51 H 0.092 0.908 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.231 8.032 -32.299 33.861 hybrid contribution -0.750 2.625 0.943 2.888 sum -6.981 10.657 -31.355 33.845 Atomic orbital electron populations 1.22824 0.80684 1.03155 1.00297 1.87964 1.20030 1.28022 1.95373 1.22709 0.93063 0.84910 1.00542 1.21723 0.93511 0.96883 0.90493 0.91955 1.21780 1.01215 1.00519 0.96181 1.61861 1.15061 1.47727 1.01678 1.22154 0.87193 0.99237 0.98421 1.21548 1.01322 0.98564 0.92522 1.20737 0.96185 0.95983 0.93114 1.21962 0.99887 0.95717 1.02430 1.21407 0.99866 0.94478 0.83232 1.45778 1.64781 1.21534 1.04163 1.20077 0.77322 0.85851 0.84949 1.90691 1.44914 1.21929 1.87107 1.23367 1.05951 1.03095 0.95596 1.85605 1.83264 1.27102 0.96591 1.23233 1.48072 1.04838 0.93085 0.89873 1.26152 0.94660 0.97741 1.00774 1.70193 1.43363 1.22338 1.18919 0.84888 0.78012 0.77944 0.76982 1.17966 1.19958 1.19930 1.21597 0.94322 1.00807 0.97344 1.22112 1.00750 0.94420 0.89676 0.89524 0.94039 0.93228 0.93051 0.91862 0.91853 0.92674 0.91446 0.93871 0.89705 0.90490 0.91994 0.91093 0.92275 0.92413 0.93043 0.92431 0.74931 0.87208 0.87283 0.92007 0.92461 0.90915 0.90753 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.39 -6.63 9.80 -148.98 -1.46 -8.09 16 3 C 0.06 0.78 5.37 71.98 0.39 1.17 16 4 C 0.08 0.97 2.47 44.92 0.11 1.08 16 5 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 6 C -0.14 -1.59 8.59 71.98 0.62 -0.97 16 7 N -0.54 -7.73 4.46 -871.13 -3.88 -11.62 16 8 C 0.06 0.74 4.85 86.33 0.42 1.16 16 9 C -0.10 -1.54 4.88 30.65 0.15 -1.39 16 10 C -0.06 -0.96 0.53 -52.10 -0.03 -0.99 16 11 C -0.14 -1.93 7.73 71.98 0.56 -1.37 16 12 C 0.13 3.16 4.57 86.38 0.39 3.55 16 13 N -0.71 -18.34 4.98 -463.04 -2.31 -20.64 16 14 C 0.53 20.08 7.85 87.66 0.69 20.77 16 15 O -0.57 -27.10 15.86 -3.04 -0.05 -27.15 16 16 C -0.13 -5.16 6.16 71.24 0.44 -4.73 16 17 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 18 C -0.54 -31.28 9.50 67.95 0.65 -30.64 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.65 5.49 84.86 0.47 1.11 16 21 N -0.91 -56.45 13.22 21.65 0.29 -56.16 16 22 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 C -0.10 -1.64 4.68 30.65 0.14 -1.49 16 27 C 0.06 0.78 5.00 86.32 0.43 1.22 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.59 6.12 -2.39 -0.01 0.58 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.63 6.20 -2.39 -0.01 0.61 16 34 H 0.05 0.87 7.58 -2.38 -0.02 0.85 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 36 H 0.04 0.49 6.52 -2.39 -0.02 0.47 16 37 H 0.08 1.04 5.87 -2.38 -0.01 1.02 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 0.80 4.93 -2.39 -0.01 0.79 16 41 H 0.06 0.78 6.86 -2.39 -0.02 0.77 16 42 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.41 7.99 6.20 -92.71 -0.57 7.42 16 46 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 47 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 48 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.07 1.06 6.96 -2.39 -0.02 1.04 16 51 H 0.07 1.02 5.98 -2.39 -0.01 1.00 16 52 H 0.04 0.52 6.51 -2.39 -0.02 0.50 16 Total: -1.00 -77.17 408.28 0.45 -76.72 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.33 Total: 20.83 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 6.67 Total: -9.97 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -5.90 Total: -88.42 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.51 Total: -35.23 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -77.17 0.45 -76.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569697737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.476 kcal (2) G-P(sol) polarization free energy of solvation -77.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds