Wall clock time and date at job start Wed Apr 1 2020 03:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47556 * 2 1 4 4 C 1.53002 * 109.46768 * 120.00011 * 2 1 3 5 5 N 1.46506 * 109.47128 * 175.30557 * 4 2 1 6 6 C 1.34774 * 119.99972 * 175.19265 * 5 4 2 7 7 O 1.21281 * 120.00094 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99815 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47133 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99924 * 180.02562 * 9 8 6 11 11 H 1.08004 * 120.00391 * 359.97438 * 10 9 8 12 12 C 1.38794 * 119.99935 * 180.02562 * 10 9 8 13 13 N 1.31638 * 120.00180 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00088 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47176 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46928 * 120.00127 * 14 12 10 17 17 H 1.48499 * 109.47572 * 239.99898 * 14 12 10 18 18 N 1.46896 * 109.47146 * 239.99539 * 2 1 3 19 19 C 1.46906 * 111.00014 * 72.38432 * 18 2 1 20 20 C 1.46900 * 111.00643 * 308.42908 * 18 2 1 21 21 C 1.52993 * 109.47398 * 190.00090 * 20 18 2 22 22 C 1.53006 * 109.47136 * 179.97438 * 21 20 18 23 23 H 1.08995 * 109.47768 * 305.02158 * 22 21 20 24 24 C 1.53088 * 109.48158 * 184.99615 * 22 21 20 25 25 C 1.53179 * 109.16237 * 182.39479 * 24 22 21 26 26 C 1.53174 * 109.03318 * 56.98649 * 25 24 22 27 27 C 1.53089 * 109.21270 * 302.98395 * 26 25 24 28 28 O 1.42898 * 109.48823 * 65.04884 * 22 21 20 29 29 H 1.09005 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46998 * 300.00276 * 1 2 3 31 31 H 1.08996 * 109.46740 * 60.00292 * 1 2 3 32 32 H 1.09001 * 109.47247 * 295.30151 * 4 2 1 33 33 H 1.08998 * 109.47178 * 55.30862 * 4 2 1 34 34 H 0.97000 * 119.99916 * 355.19782 * 5 4 2 35 35 H 1.09000 * 109.47299 * 299.99999 * 8 6 5 36 36 H 1.09000 * 109.47639 * 59.99775 * 8 6 5 37 37 H 0.96998 * 120.00350 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.46662 * 290.02314 * 19 18 2 39 39 H 1.09004 * 109.47083 * 50.02133 * 19 18 2 40 40 H 1.09001 * 109.47064 * 170.02171 * 19 18 2 41 41 H 1.09001 * 109.46827 * 69.99335 * 20 18 2 42 42 H 1.09003 * 109.46733 * 310.00039 * 20 18 2 43 43 H 1.09001 * 109.47747 * 59.99809 * 21 20 18 44 44 H 1.09003 * 109.47137 * 299.99701 * 21 20 18 45 45 H 1.09003 * 109.52291 * 62.49165 * 24 22 21 46 46 H 1.09001 * 109.57693 * 302.33839 * 24 22 21 47 47 H 1.08993 * 109.54515 * 297.11623 * 25 24 22 48 48 H 1.09009 * 109.61252 * 176.89129 * 25 24 22 49 49 H 1.08996 * 109.52708 * 62.92228 * 26 25 24 50 50 H 1.09001 * 109.51893 * 183.04766 * 26 25 24 51 51 H 1.09005 * 109.48127 * 177.62581 * 27 26 25 52 52 H 1.08999 * 109.48105 * 297.65801 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5006 -0.8200 1.1942 6 6 4.1812 -1.3335 2.2380 7 8 3.5845 -1.7134 3.2231 8 6 5.6837 -1.4345 2.1815 9 16 6.2981 -2.1589 3.7223 10 6 8.0288 -2.1585 3.3918 11 1 8.3989 -1.7785 2.4509 12 6 8.9165 -2.6474 4.3401 13 7 8.4655 -3.1109 5.4866 14 14 10.7513 -2.6475 3.9895 15 1 10.9976 -2.0777 2.6405 16 1 11.4502 -1.8245 5.0092 17 1 11.2650 -4.0399 4.0405 18 7 2.0197 -0.6926 -1.1993 19 6 1.8039 0.1220 -2.4027 20 6 1.3916 -2.0133 -1.3381 21 6 2.0990 -2.8009 -2.4426 22 6 1.4451 -4.1767 -2.5867 23 1 1.4477 -4.6832 -1.6215 24 6 2.2293 -5.0108 -3.6030 25 6 1.5346 -6.3637 -3.7861 26 6 0.0859 -6.1262 -4.2233 27 6 -0.6169 -5.2498 -3.1833 28 8 0.0987 -4.0197 -3.0389 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7469 -0.1611 2.1373 33 1 1.6096 -1.7218 1.2923 34 1 3.9779 -0.5157 0.4065 35 1 5.9741 -2.0657 1.3417 36 1 6.1102 -0.4397 2.0528 37 1 9.0859 -3.4529 6.1493 38 1 0.7374 0.1696 -2.6226 39 1 2.1851 1.1290 -2.2330 40 1 2.3289 -0.3281 -3.2451 41 1 0.3398 -1.8900 -1.5962 42 1 1.4734 -2.5552 -0.3959 43 1 3.1508 -2.9242 -2.1845 44 1 2.0172 -2.2590 -3.3848 45 1 3.2444 -5.1690 -3.2387 46 1 2.2627 -4.4862 -4.5579 47 1 1.5461 -6.9101 -2.8431 48 1 2.0556 -6.9422 -4.5492 49 1 0.0749 -5.6237 -5.1904 50 1 -0.4316 -7.0822 -4.3036 51 1 -1.6358 -5.0430 -3.5110 52 1 -0.6413 -5.7703 -2.2260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570697183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:06 Heat of formation + Delta-G solvation = -122.058337 kcal Electronic energy + Delta-G solvation = -28374.040610 eV Core-core repulsion = 24498.082324 eV Total energy + Delta-G solvation = -3875.958286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.83673 -40.38493 -39.29610 -35.64787 -34.56741 -34.54680 -34.17972 -32.22464 -30.72191 -29.84755 -27.73212 -27.20607 -26.55115 -25.33240 -24.25367 -22.46414 -21.60420 -21.25140 -20.48014 -19.73433 -17.73532 -17.55342 -17.43834 -17.15993 -16.86826 -16.82397 -16.21772 -15.98123 -15.83760 -15.62063 -15.43700 -15.19789 -14.70528 -14.49659 -14.48644 -14.27094 -14.09585 -13.65168 -13.53958 -13.34961 -13.19748 -13.13780 -12.99747 -12.90092 -12.84335 -12.67347 -12.56459 -12.27286 -12.12847 -11.99537 -11.80963 -11.67814 -11.54994 -11.51103 -11.16565 -11.14236 -10.90397 -10.36011 -10.24544 -10.00460 -9.24358 -8.64277 -8.33040 -6.10657 1.29535 1.42432 1.49186 1.60570 1.68847 2.28240 2.37595 2.81243 2.94461 3.00960 3.36263 3.66118 3.85039 3.88330 3.93270 3.97574 4.00957 4.11651 4.13437 4.28537 4.29954 4.34182 4.38898 4.42300 4.52279 4.55049 4.56147 4.59425 4.67509 4.71448 4.75975 4.81269 4.85459 4.88262 4.93489 4.99376 5.02439 5.08885 5.11427 5.13707 5.20468 5.25571 5.31862 5.38112 5.43926 5.53112 6.10380 6.13839 6.22016 6.31023 6.64239 7.08309 7.34220 8.76472 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.002338 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.490192 B =11972.909284 C =13642.727342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 H 0.103 0.897 4 C 0.131 3.869 5 N -0.698 5.698 6 C 0.531 3.469 7 O -0.572 6.572 8 C -0.126 4.126 9 S -0.152 6.152 10 C -0.543 4.543 11 H 0.082 0.918 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.257 1.257 16 H -0.274 1.274 17 H -0.274 1.274 18 N -0.541 5.541 19 C 0.024 3.976 20 C 0.061 3.939 21 C -0.100 4.100 22 C 0.091 3.909 23 H 0.047 0.953 24 C -0.148 4.148 25 C -0.127 4.127 26 C -0.152 4.152 27 C 0.054 3.946 28 O -0.394 6.394 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.418 0.582 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.271 0.729 38 H 0.030 0.970 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.085 0.915 51 H 0.104 0.896 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.468 2.020 -25.025 31.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.031 4.031 3 H 0.121 0.879 4 C 0.006 3.994 5 N -0.351 5.351 6 C 0.317 3.683 7 O -0.452 6.452 8 C -0.278 4.278 9 S 0.075 5.925 10 C -0.691 4.691 11 H 0.100 0.900 12 C -0.193 4.193 13 N -0.549 5.549 14 Si 0.821 3.179 15 H -0.180 1.180 16 H -0.199 1.199 17 H -0.199 1.199 18 N -0.265 5.265 19 C -0.124 4.124 20 C -0.067 4.067 21 C -0.138 4.138 22 C 0.032 3.968 23 H 0.065 0.935 24 C -0.185 4.185 25 C -0.164 4.164 26 C -0.190 4.190 27 C -0.022 4.022 28 O -0.314 6.314 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.256 0.744 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.104 0.896 51 H 0.122 0.878 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.015 1.451 -23.254 30.073 hybrid contribution 1.026 0.056 -1.091 1.499 sum -17.989 1.508 -24.345 30.308 Atomic orbital electron populations 1.22318 0.95336 1.02587 1.03382 1.21917 0.94182 0.98398 0.88617 0.87897 1.21424 0.79689 1.00218 0.98035 1.45584 1.07501 1.63456 1.18604 1.20056 0.88833 0.76672 0.82768 1.90679 1.70878 1.49660 1.33938 1.23339 0.94882 1.05853 1.03697 1.85563 1.05645 1.81310 1.20011 1.23230 0.91593 1.48256 1.06036 0.89979 1.26140 1.05239 0.93849 0.94047 1.70197 1.37210 1.39930 1.07524 0.84897 0.75865 0.78221 0.78906 1.18015 1.19939 1.19924 1.62137 1.58023 1.03269 1.03069 1.22450 0.99814 0.97985 0.92110 1.22030 0.96504 0.89687 0.98442 1.21547 0.99533 0.93450 0.99277 1.22099 0.82313 0.96451 0.95889 0.93513 1.22166 0.99750 0.96476 1.00139 1.21626 0.96011 0.96794 1.01970 1.22157 0.96239 1.00979 0.99595 1.22728 0.96106 0.85275 0.98139 1.87911 1.24859 1.30818 1.87822 0.92619 0.91111 0.91030 0.91792 0.93150 0.74429 0.87520 0.87425 0.92033 0.95154 0.90474 0.90816 0.93846 0.92490 0.90016 0.90609 0.90631 0.90958 0.92138 0.90604 0.91199 0.89639 0.87819 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 8.42 71.98 0.61 -1.87 16 2 C 0.08 1.24 2.47 44.92 0.11 1.35 16 3 H 0.10 1.43 7.88 -2.39 -0.02 1.42 16 4 C 0.13 3.07 4.93 86.38 0.43 3.50 16 5 N -0.70 -18.81 5.42 -463.05 -2.51 -21.31 16 6 C 0.53 20.34 7.85 87.66 0.69 21.03 16 7 O -0.57 -27.35 15.86 -3.03 -0.05 -27.40 16 8 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 9 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.54 -31.40 9.50 67.95 0.65 -30.75 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 12 C 0.01 0.68 5.49 84.86 0.47 1.14 16 13 N -0.91 -56.56 13.22 21.65 0.29 -56.28 16 14 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 15 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 N -0.54 -8.48 4.09 -897.04 -3.66 -12.15 16 19 C 0.02 0.29 8.87 127.69 1.13 1.42 16 20 C 0.06 1.08 3.72 86.30 0.32 1.40 16 21 C -0.10 -1.65 4.84 30.59 0.15 -1.50 16 22 C 0.09 1.56 2.64 30.63 0.08 1.64 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 C -0.15 -2.18 5.42 30.68 0.17 -2.01 16 25 C -0.13 -1.65 6.03 30.71 0.19 -1.47 16 26 C -0.15 -1.77 6.13 30.68 0.19 -1.58 16 27 C 0.05 0.74 6.85 72.01 0.49 1.24 16 28 O -0.39 -7.21 9.95 -148.98 -1.48 -8.69 16 29 H 0.05 0.88 6.54 -2.38 -0.02 0.87 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.87 7.00 -2.39 -0.02 0.85 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.33 6.65 -2.39 -0.02 1.31 16 34 H 0.42 9.16 8.08 -92.71 -0.75 8.41 16 35 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 36 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 37 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.03 0.36 7.07 -2.39 -0.02 0.35 16 39 H 0.08 0.79 7.90 -2.38 -0.02 0.77 16 40 H 0.07 0.87 6.77 -2.39 -0.02 0.85 16 41 H 0.04 0.80 6.45 -2.39 -0.02 0.78 16 42 H 0.06 1.22 6.29 -2.39 -0.02 1.21 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 44 H 0.08 1.17 6.69 -2.39 -0.02 1.15 16 45 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 52 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -75.39 416.72 -0.31 -75.71 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.14 Total: 25.09 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 6.10 Total: -11.20 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -5.89 Total: -89.74 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.53 Total: -36.09 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -75.39 -0.31 -75.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570697183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.352 kcal (2) G-P(sol) polarization free energy of solvation -75.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds