Wall clock time and date at job start Wed Apr 1 2020 03:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00297 * 2 1 4 4 C 1.53004 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46904 * 174.99561 * 4 3 2 6 6 C 1.53001 * 109.46864 * 54.99746 * 4 3 2 7 7 N 1.46897 * 109.47143 * 294.99930 * 4 3 2 8 8 C 1.46899 * 110.99742 * 204.99939 * 7 4 3 9 9 C 1.53008 * 109.46961 * 180.02562 * 8 7 4 10 10 C 1.53000 * 109.47314 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.52156 * 54.91576 * 10 9 8 12 12 C 1.53031 * 109.49803 * 174.99912 * 10 9 8 13 13 C 1.53046 * 109.53726 * 181.31760 * 12 10 9 14 14 C 1.53195 * 109.30793 * 298.63346 * 13 12 10 15 15 N 1.46923 * 108.77776 * 54.63922 * 14 13 12 16 16 C 1.34770 * 120.63141 * 126.40957 * 15 14 13 17 17 O 1.21286 * 120.00056 * 179.97438 * 16 15 14 18 18 C 1.50695 * 120.00355 * 359.97438 * 16 15 14 19 19 S 1.81000 * 109.47518 * 179.97438 * 18 16 15 20 20 C 1.76192 * 100.00227 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00332 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00047 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00370 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00124 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47376 * 89.99957 * 24 22 20 26 26 H 1.48501 * 109.47388 * 210.00010 * 24 22 20 27 27 H 1.48510 * 109.46972 * 329.99967 * 24 22 20 28 28 C 1.46927 * 118.73554 * 306.38601 * 15 14 13 29 29 H 1.08997 * 109.47077 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47100 * 300.00494 * 1 2 3 31 31 H 1.09001 * 109.46633 * 60.00000 * 1 2 3 32 32 H 1.08996 * 109.47628 * 59.99737 * 3 2 1 33 33 H 1.09007 * 109.46941 * 299.99610 * 3 2 1 34 34 H 1.09003 * 109.46999 * 179.97438 * 6 4 3 35 35 H 1.08995 * 109.47313 * 299.99983 * 6 4 3 36 36 H 1.09003 * 109.47138 * 60.00208 * 6 4 3 37 37 H 1.00902 * 111.00294 * 81.04687 * 7 4 3 38 38 H 1.09001 * 109.47375 * 60.00115 * 8 7 4 39 39 H 1.08999 * 109.47370 * 299.99549 * 8 7 4 40 40 H 1.09001 * 109.46986 * 59.99872 * 9 8 7 41 41 H 1.08999 * 109.46707 * 299.99951 * 9 8 7 42 42 H 1.08995 * 109.46212 * 61.29559 * 12 10 9 43 43 H 1.09006 * 109.46201 * 301.33426 * 12 10 9 44 44 H 1.08990 * 109.49711 * 58.58414 * 13 12 10 45 45 H 1.08999 * 109.49785 * 178.68661 * 13 12 10 46 46 H 1.09009 * 109.58115 * 174.42370 * 14 13 12 47 47 H 1.08995 * 109.58619 * 294.84531 * 14 13 12 48 48 H 1.09001 * 109.47078 * 300.00169 * 18 16 15 49 49 H 1.09004 * 109.47098 * 59.99973 * 18 16 15 50 50 H 0.97000 * 120.00435 * 179.97438 * 23 22 20 51 51 H 1.08993 * 109.58956 * 293.82344 * 28 15 14 52 52 H 1.08999 * 109.70338 * 173.46710 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1764 -0.0890 6 6 3.9790 0.3192 -1.1806 7 7 3.9769 0.5626 1.2561 8 6 5.3587 0.9454 1.5758 9 6 5.7821 0.2793 2.8866 10 6 7.2210 0.6785 3.2200 11 1 7.3027 1.7653 3.2378 12 6 7.6028 0.1150 4.5907 13 6 9.0307 0.5413 4.9396 14 6 9.9982 -0.0270 3.8966 15 7 9.5528 0.3919 2.5606 16 6 10.3986 1.0208 1.7207 17 8 10.0190 1.3612 0.6202 18 6 11.8160 1.3011 2.1487 19 16 12.6937 2.1488 0.8119 20 6 14.2755 2.3477 1.5622 21 1 14.4480 1.9821 2.5637 22 6 15.3002 2.9733 0.8657 23 7 15.0902 3.4185 -0.3551 24 14 16.9774 3.1836 1.6609 25 1 17.8233 2.0030 1.3517 26 1 17.6262 4.4098 1.1310 27 1 16.8159 3.3052 3.1321 28 6 8.1680 0.1118 2.1575 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 5.0656 0.2335 -1.1805 35 1 3.5359 -0.6726 -1.0910 36 1 3.6515 0.7807 -2.1123 37 1 3.8797 -0.4409 1.2164 38 1 5.4204 2.0285 1.6817 39 1 6.0207 0.6204 0.7733 40 1 5.7204 -0.8037 2.7803 41 1 5.1201 0.6039 3.6894 42 1 7.5447 -0.9731 4.5650 43 1 6.9151 0.4975 5.3450 44 1 9.0954 1.6293 4.9411 45 1 9.2937 0.1593 5.9260 46 1 11.0021 0.3544 4.0834 47 1 10.0016 -1.1153 3.9561 48 1 11.8092 1.9326 3.0371 49 1 12.3198 0.3613 2.3749 50 1 15.8062 3.8561 -0.8417 51 1 8.0221 -0.9652 2.0752 52 1 7.9625 0.5828 1.1963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666084049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:30 Heat of formation + Delta-G solvation = -100.628581 kcal Electronic energy + Delta-G solvation = -27913.256986 eV Core-core repulsion = 24038.227964 eV Total energy + Delta-G solvation = -3875.029022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.02994 -38.78171 -37.66362 -36.55183 -34.22153 -32.43048 -32.26278 -30.95450 -29.34973 -27.62483 -27.12925 -25.91134 -25.57681 -24.96326 -23.54435 -21.46354 -21.14007 -20.31639 -19.04086 -17.65475 -16.89013 -16.67728 -16.31877 -16.03403 -15.81921 -15.28809 -15.20767 -14.80212 -14.78823 -14.69756 -14.30398 -13.94498 -13.73884 -13.56548 -13.21737 -13.15867 -13.07894 -12.82005 -12.69260 -12.46554 -12.11835 -12.10107 -11.91894 -11.72707 -11.43048 -11.30943 -11.25628 -11.15663 -11.06187 -11.01805 -10.83525 -10.76138 -10.71549 -10.41052 -9.95394 -9.79541 -9.32020 -9.06384 -8.61244 -8.46316 -8.21688 -6.49543 -6.21271 -3.91770 2.96434 3.08030 3.22360 3.26554 3.30568 3.50493 3.61543 3.82600 4.20596 4.51194 4.58169 4.63707 4.68816 4.81272 4.86030 4.93746 4.95960 5.00890 5.03597 5.12302 5.13744 5.13866 5.19448 5.20963 5.31518 5.33551 5.38025 5.42760 5.46406 5.55113 5.61719 5.62971 5.64569 5.71085 5.73999 5.78360 5.84555 5.89964 5.95604 5.99388 6.01900 6.10567 6.13083 6.26027 6.69266 6.73346 6.89737 7.18581 7.59132 7.61131 8.35418 8.59230 9.23956 10.86132 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.001915 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.737220 B =14616.840469 C =15965.933770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.072 3.928 4 C 0.085 3.915 5 H 0.090 0.910 6 C -0.180 4.180 7 N -0.682 5.682 8 C 0.052 3.948 9 C -0.106 4.106 10 C -0.101 4.101 11 H 0.076 0.924 12 C -0.111 4.111 13 C -0.136 4.136 14 C 0.107 3.893 15 N -0.619 5.619 16 C 0.535 3.465 17 O -0.519 6.519 18 C -0.150 4.150 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.117 3.883 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.346 0.654 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.268 0.732 51 H 0.060 0.940 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.946 -8.218 8.036 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.005 4.005 4 C -0.025 4.025 5 H 0.108 0.892 6 C -0.238 4.238 7 N -0.313 5.313 8 C -0.077 4.077 9 C -0.145 4.145 10 C -0.121 4.121 11 H 0.095 0.905 12 C -0.149 4.149 13 C -0.174 4.174 14 C -0.016 4.016 15 N -0.355 5.355 16 C 0.323 3.677 17 O -0.394 6.394 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.006 4.006 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.164 0.836 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.107 0.893 50 H 0.078 0.922 51 H 0.079 0.921 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -26.584 -7.290 6.628 28.351 hybrid contribution 1.815 -0.543 1.173 2.229 sum -24.769 -7.833 7.801 27.124 Atomic orbital electron populations 1.22698 0.81409 1.02526 0.99753 1.87860 1.19278 1.27993 1.95349 1.22611 0.93157 0.84741 0.99978 1.21614 0.93256 0.98959 0.88689 0.89206 1.22398 1.01420 1.01262 0.98766 1.60570 1.22437 1.15297 1.32950 1.22117 0.88227 1.00681 0.96677 1.21523 0.95030 1.00380 0.97522 1.21520 0.94090 1.01253 0.95245 0.90537 1.21541 0.96305 1.00745 0.96314 1.21930 0.95158 1.01806 0.98534 1.21723 0.98870 0.99335 0.81715 1.48090 1.11572 1.60052 1.15822 1.20324 0.86904 0.76204 0.84289 1.90681 1.77313 1.50583 1.20781 1.23552 0.95051 1.04963 1.06521 1.85391 1.07842 1.73376 1.16883 1.22861 0.96833 1.44800 1.03839 0.90959 1.24988 0.99033 0.94704 0.94836 1.70018 1.33286 1.36628 1.10350 0.86173 0.82188 0.77870 0.79297 1.20273 1.20751 1.19695 1.21611 0.80423 0.99726 0.98798 0.89861 0.94171 0.94402 0.92606 0.93345 0.92496 0.91515 0.92229 0.83590 0.90960 0.94524 0.91928 0.90835 0.91832 0.91698 0.91294 0.90748 0.89286 0.91618 0.89301 0.89331 0.92198 0.92150 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.38 9.77 -35.23 -0.34 -3.72 16 3 C 0.07 0.57 5.77 37.16 0.21 0.78 16 4 C 0.09 0.72 2.99 -67.71 -0.20 0.51 16 5 H 0.09 0.75 7.80 -51.93 -0.40 0.35 16 6 C -0.18 -1.54 8.96 37.16 0.33 -1.21 16 7 N -0.68 -5.99 6.20 -106.72 -0.66 -6.65 16 8 C 0.05 0.47 5.25 -3.82 -0.02 0.45 16 9 C -0.11 -0.87 4.94 -26.73 -0.13 -1.01 16 10 C -0.10 -0.98 2.34 -90.50 -0.21 -1.19 16 11 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 12 C -0.11 -0.93 5.17 -26.69 -0.14 -1.07 16 13 C -0.14 -1.24 6.08 -26.61 -0.16 -1.40 16 14 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 15 N -0.62 -8.97 2.97 -172.77 -0.51 -9.48 16 16 C 0.53 10.36 7.72 -10.99 -0.08 10.28 16 17 O -0.52 -12.00 15.28 5.55 0.08 -11.92 16 18 C -0.15 -3.10 4.50 36.00 0.16 -2.94 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 24 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.12 1.44 5.33 -3.71 -0.02 1.42 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 34 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 35 H 0.07 0.60 7.55 -51.93 -0.39 0.21 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.35 3.02 8.47 -39.29 -0.33 2.69 16 38 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 39 H 0.04 0.37 5.99 -51.93 -0.31 0.06 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.02 5.93 -51.92 -0.31 0.72 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.70 7.69 -51.92 -0.40 1.30 16 49 H 0.09 1.69 7.94 -51.91 -0.41 1.28 16 50 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 51 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.09 1.32 5.73 -51.93 -0.30 1.03 16 LS Contribution 421.14 15.07 6.35 6.35 Total: -1.00 -33.93 421.14 -10.11 -44.04 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -9.55 Total: 0.25 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 1.03 Total: -5.87 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.44 Total: -41.64 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.26 Total: -15.64 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.93 -10.11 -44.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666084049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.584 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds