Wall clock time and date at job start Wed Apr 1 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00047 * 2 1 4 4 C 1.52999 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46826 * 176.06375 * 4 3 2 6 6 C 1.52992 * 109.47172 * 56.06737 * 4 3 2 7 7 N 1.46897 * 109.46764 * 296.06348 * 4 3 2 8 8 C 1.46853 * 110.99721 * 172.35077 * 7 4 3 9 9 C 1.53037 * 109.52178 * 185.84270 * 8 7 4 10 10 C 1.53123 * 109.27609 * 300.81584 * 9 8 7 11 11 C 1.52996 * 109.52125 * 177.56290 * 10 9 8 12 12 H 1.08999 * 109.47179 * 300.31250 * 11 10 9 13 13 C 1.52997 * 109.46919 * 180.31815 * 11 10 9 14 14 N 1.46496 * 109.47509 * 60.31709 * 11 10 9 15 15 C 1.34778 * 120.00452 * 205.00267 * 14 11 10 16 16 O 1.21281 * 119.99926 * 359.97438 * 15 14 11 17 17 C 1.50698 * 120.00430 * 180.02562 * 15 14 11 18 18 S 1.80997 * 109.47248 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99924 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99829 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00133 * 179.97438 * 19 18 17 22 22 N 1.31636 * 119.99614 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00238 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47011 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46843 * 120.00362 * 23 21 19 26 26 H 1.48495 * 109.47269 * 240.00392 * 23 21 19 27 27 C 1.53119 * 109.16136 * 57.65647 * 10 9 8 28 28 C 1.46848 * 111.00102 * 296.55320 * 7 4 3 29 29 H 1.09001 * 109.47185 * 60.00348 * 1 2 3 30 30 H 1.08998 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47450 * 300.00155 * 1 2 3 32 32 H 1.09007 * 109.46987 * 300.00058 * 3 2 1 33 33 H 1.08994 * 109.47261 * 59.99334 * 3 2 1 34 34 H 1.09002 * 109.47783 * 60.00322 * 6 4 3 35 35 H 1.09002 * 109.47319 * 180.02562 * 6 4 3 36 36 H 1.09004 * 109.47446 * 299.99582 * 6 4 3 37 37 H 1.09000 * 109.45940 * 305.85243 * 8 7 4 38 38 H 1.09000 * 109.46565 * 65.82121 * 8 7 4 39 39 H 1.08998 * 109.50199 * 180.88001 * 9 8 7 40 40 H 1.08996 * 109.53722 * 60.77449 * 9 8 7 41 41 H 1.08999 * 109.52290 * 297.75274 * 10 9 8 42 42 H 1.09002 * 109.47233 * 299.99729 * 13 11 10 43 43 H 1.08996 * 109.47575 * 59.99894 * 13 11 10 44 44 H 1.09005 * 109.47371 * 180.02562 * 13 11 10 45 45 H 0.97006 * 120.00096 * 24.99854 * 14 11 10 46 46 H 1.09008 * 109.46958 * 299.99414 * 17 15 14 47 47 H 1.09002 * 109.47257 * 59.99171 * 17 15 14 48 48 H 0.97006 * 119.99783 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.50415 * 182.40515 * 27 10 9 50 50 H 1.09004 * 109.53331 * 62.30372 * 27 10 9 51 51 H 1.08993 * 109.46401 * 294.18189 * 28 7 4 52 52 H 1.08999 * 109.45986 * 54.14876 * 28 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1780 -0.0712 6 6 3.9798 0.3419 -1.1978 7 7 3.9759 0.5391 1.2432 8 6 5.4134 0.2417 1.2012 9 6 5.8069 -0.5574 2.4457 10 6 5.4718 0.2586 3.6973 11 6 5.8067 -0.5596 4.9459 12 1 5.2260 -1.4821 4.9424 13 6 5.4641 0.2537 6.1957 14 7 7.2357 -0.8822 4.9497 15 6 7.6806 -1.9645 5.6184 16 8 6.8979 -2.6713 6.2174 17 6 9.1506 -2.2960 5.6228 18 16 9.4284 -3.7940 6.6000 19 6 11.1766 -3.9447 6.4387 20 1 11.7301 -3.2192 5.8611 21 6 11.8423 -4.9958 7.0539 22 7 11.1675 -5.8803 7.7575 23 14 13.6954 -5.1560 6.8824 24 1 14.2132 -4.0430 6.0465 25 1 14.3238 -5.0986 8.2267 26 1 14.0226 -6.4532 6.2380 27 6 3.9784 0.5964 3.6921 28 6 3.6380 1.3621 2.4115 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.6530 0.8208 -2.1207 35 1 5.0663 0.2554 -1.1980 36 1 3.5367 -0.6516 -1.1273 37 1 5.6375 -0.3425 0.3087 38 1 5.9767 1.1745 1.1755 39 1 6.8767 -0.7646 2.4219 40 1 5.2546 -1.4969 2.4652 41 1 6.0537 1.1803 3.6977 42 1 6.0448 1.1762 6.1993 43 1 4.4009 0.4937 6.1929 44 1 5.7031 -0.3290 7.0853 45 1 7.8619 -0.3168 4.4709 46 1 9.4889 -2.4612 4.5998 47 1 9.7085 -1.4682 6.0607 48 1 11.6327 -6.6151 8.1872 49 1 3.7419 1.2136 4.5589 50 1 3.3963 -0.3244 3.7313 51 1 4.2095 2.2895 2.3800 52 1 2.5725 1.5916 2.3980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701010670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:32 Heat of formation + Delta-G solvation = -89.682240 kcal Electronic energy + Delta-G solvation = -28377.574803 eV Core-core repulsion = 24503.020450 eV Total energy + Delta-G solvation = -3874.554353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.20476 -39.15034 -37.94734 -36.18418 -33.70829 -32.40450 -31.62441 -31.22378 -29.54973 -28.34786 -27.63172 -26.13100 -25.46749 -24.78045 -22.94303 -21.75839 -20.47544 -20.33130 -19.76501 -17.82948 -17.21320 -16.70314 -16.26460 -15.99870 -15.80008 -15.42763 -14.96070 -14.86524 -14.78454 -14.30966 -14.20035 -14.00460 -13.90600 -13.63067 -13.29373 -13.07151 -13.00097 -12.83757 -12.53276 -12.37551 -12.17209 -12.12492 -11.84383 -11.63587 -11.49119 -11.40781 -11.35844 -11.24734 -11.05486 -10.99328 -10.74810 -10.70187 -10.44620 -10.33752 -9.92128 -9.77265 -9.29144 -9.05425 -8.79654 -8.51997 -8.19390 -6.46579 -6.19492 -3.89422 3.08794 3.17930 3.23027 3.30047 3.35228 3.40944 3.56781 3.77320 4.22685 4.38877 4.47353 4.55267 4.58758 4.71957 4.87900 4.93099 4.98488 5.01669 5.05582 5.09626 5.15521 5.16015 5.19093 5.24217 5.30165 5.33022 5.35802 5.40340 5.43123 5.48190 5.53784 5.60544 5.68022 5.69378 5.77172 5.79233 5.89983 5.93639 5.98846 6.02691 6.12182 6.18121 6.24426 6.34433 6.74953 6.78338 6.86362 6.94641 7.62133 7.80908 8.37745 8.70853 9.25953 10.87972 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.001877 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.200499 B =14915.576782 C =15409.088380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.069 3.931 4 C 0.083 3.917 5 H 0.050 0.950 6 C -0.146 4.146 7 N -0.523 5.523 8 C 0.053 3.947 9 C -0.111 4.111 10 C -0.093 4.093 11 C 0.149 3.851 12 H 0.088 0.912 13 C -0.165 4.165 14 N -0.733 5.733 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.108 4.108 28 C 0.055 3.945 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.029 0.971 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.395 0.605 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.267 0.733 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.029 0.971 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.670 20.070 -17.147 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.287 6.287 3 C -0.009 4.009 4 C -0.025 4.025 5 H 0.068 0.932 6 C -0.204 4.204 7 N -0.248 5.248 8 C -0.074 4.074 9 C -0.149 4.149 10 C -0.112 4.112 11 C 0.044 3.956 12 H 0.106 0.894 13 C -0.223 4.223 14 N -0.387 5.387 15 C 0.319 3.681 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.146 4.146 28 C -0.072 4.072 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.229 0.771 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.095 0.905 51 H 0.048 0.952 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.114 18.104 -15.991 31.434 hybrid contribution 2.623 2.106 -1.066 3.529 sum -17.491 20.211 -17.057 31.708 Atomic orbital electron populations 1.22732 0.81704 1.02760 0.99478 1.88018 1.18745 1.26729 1.95174 1.22591 0.93138 0.85444 0.99694 1.21652 0.93361 0.96410 0.91076 0.93224 1.21852 1.01141 1.01647 0.95711 1.61910 1.16154 1.45548 1.01219 1.22198 0.87094 0.98733 0.99418 1.21626 1.01345 0.99261 0.92623 1.21467 0.96909 0.98478 0.94338 1.20882 0.82334 0.98629 0.93707 0.89382 1.22233 1.01287 1.00091 0.98694 1.46078 1.08312 1.29221 1.55100 1.20267 0.90398 0.79628 0.77824 1.90696 1.57180 1.49232 1.42080 1.23535 0.94378 1.06552 1.05955 1.85398 1.08794 1.25004 1.64185 1.22915 0.92322 1.15025 1.38016 0.90924 1.24995 0.99323 0.94774 0.94552 1.70035 1.35937 1.13310 1.31001 0.86120 0.83169 0.78172 0.78051 1.19644 1.20592 1.20575 1.21627 0.95316 1.01340 0.96344 1.22127 1.00568 0.93992 0.90555 0.94555 0.89626 0.94347 0.93292 0.93299 0.92514 0.92346 0.90567 0.90030 0.95274 0.91204 0.90637 0.91224 0.92823 0.91757 0.91790 0.77123 0.89348 0.89389 0.92267 0.91054 0.90535 0.95249 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -3.34 9.80 -35.23 -0.35 -3.69 16 3 C 0.07 0.48 5.41 37.16 0.20 0.68 16 4 C 0.08 0.62 2.47 -67.72 -0.17 0.45 16 5 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 6 C -0.15 -1.06 8.53 37.15 0.32 -0.75 16 7 N -0.52 -4.53 4.46 -226.69 -1.01 -5.54 16 8 C 0.05 0.45 5.05 -3.83 -0.02 0.43 16 9 C -0.11 -1.06 5.19 -26.65 -0.14 -1.20 16 10 C -0.09 -0.84 1.89 -90.50 -0.17 -1.01 16 11 C 0.15 1.78 2.16 -67.94 -0.15 1.63 16 12 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 13 C -0.16 -1.86 9.13 37.16 0.34 -1.52 16 14 N -0.73 -9.83 4.43 -53.81 -0.24 -10.06 16 15 C 0.53 10.00 7.81 -10.99 -0.09 9.91 16 16 O -0.52 -11.85 15.52 5.56 0.09 -11.76 16 17 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 23 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.11 -0.90 4.95 -26.65 -0.13 -1.03 16 28 C 0.06 0.43 5.28 -3.83 -0.02 0.41 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.32 6.18 -51.93 -0.32 0.00 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.40 6.19 -51.93 -0.32 0.08 16 36 H 0.08 0.69 7.58 -51.93 -0.39 0.30 16 37 H 0.08 0.69 5.85 -51.93 -0.30 0.39 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.67 7.56 -51.93 -0.39 0.28 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.60 6.49 -51.93 -0.34 0.27 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.40 4.22 8.42 -40.82 -0.34 3.87 16 46 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 47 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 48 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.07 0.52 6.58 -51.93 -0.34 0.18 16 50 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 52 H 0.07 0.54 6.05 -51.93 -0.31 0.23 16 LS Contribution 415.60 15.07 6.26 6.26 Total: -1.00 -34.60 415.60 -9.58 -44.18 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -9.35 Total: 0.23 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 1.51 Total: -6.67 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.52 Total: -41.25 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.26 Total: -15.45 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.60 -9.58 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701010670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.498 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds