Wall clock time and date at job start Wed Apr 1 2020 03:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00047 * 2 1 4 4 C 1.52999 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46826 * 176.06375 * 4 3 2 6 6 C 1.52992 * 109.47172 * 56.06737 * 4 3 2 7 7 N 1.46897 * 109.46764 * 296.06348 * 4 3 2 8 8 C 1.46853 * 110.99721 * 172.35077 * 7 4 3 9 9 C 1.53037 * 109.52178 * 185.84270 * 8 7 4 10 10 C 1.53123 * 109.27609 * 300.81584 * 9 8 7 11 11 C 1.52996 * 109.52125 * 177.56290 * 10 9 8 12 12 H 1.08999 * 109.47179 * 300.31250 * 11 10 9 13 13 C 1.52997 * 109.46919 * 180.31815 * 11 10 9 14 14 N 1.46496 * 109.47509 * 60.31709 * 11 10 9 15 15 C 1.34778 * 120.00452 * 205.00267 * 14 11 10 16 16 O 1.21281 * 119.99926 * 359.97438 * 15 14 11 17 17 C 1.50698 * 120.00430 * 180.02562 * 15 14 11 18 18 S 1.80997 * 109.47248 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99924 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99829 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00133 * 179.97438 * 19 18 17 22 22 N 1.31636 * 119.99614 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00238 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47011 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46843 * 120.00362 * 23 21 19 26 26 H 1.48495 * 109.47269 * 240.00392 * 23 21 19 27 27 C 1.53119 * 109.16136 * 57.65647 * 10 9 8 28 28 C 1.46848 * 111.00102 * 296.55320 * 7 4 3 29 29 H 1.09001 * 109.47185 * 60.00348 * 1 2 3 30 30 H 1.08998 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47450 * 300.00155 * 1 2 3 32 32 H 1.09007 * 109.46987 * 300.00058 * 3 2 1 33 33 H 1.08994 * 109.47261 * 59.99334 * 3 2 1 34 34 H 1.09002 * 109.47783 * 60.00322 * 6 4 3 35 35 H 1.09002 * 109.47319 * 180.02562 * 6 4 3 36 36 H 1.09004 * 109.47446 * 299.99582 * 6 4 3 37 37 H 1.09000 * 109.45940 * 305.85243 * 8 7 4 38 38 H 1.09000 * 109.46565 * 65.82121 * 8 7 4 39 39 H 1.08998 * 109.50199 * 180.88001 * 9 8 7 40 40 H 1.08996 * 109.53722 * 60.77449 * 9 8 7 41 41 H 1.08999 * 109.52290 * 297.75274 * 10 9 8 42 42 H 1.09002 * 109.47233 * 299.99729 * 13 11 10 43 43 H 1.08996 * 109.47575 * 59.99894 * 13 11 10 44 44 H 1.09005 * 109.47371 * 180.02562 * 13 11 10 45 45 H 0.97006 * 120.00096 * 24.99854 * 14 11 10 46 46 H 1.09008 * 109.46958 * 299.99414 * 17 15 14 47 47 H 1.09002 * 109.47257 * 59.99171 * 17 15 14 48 48 H 0.97006 * 119.99783 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.50415 * 182.40515 * 27 10 9 50 50 H 1.09004 * 109.53331 * 62.30372 * 27 10 9 51 51 H 1.08993 * 109.46401 * 294.18189 * 28 7 4 52 52 H 1.08999 * 109.45986 * 54.14876 * 28 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1780 -0.0712 6 6 3.9798 0.3419 -1.1978 7 7 3.9759 0.5391 1.2432 8 6 5.4134 0.2417 1.2012 9 6 5.8069 -0.5574 2.4457 10 6 5.4718 0.2586 3.6973 11 6 5.8067 -0.5596 4.9459 12 1 5.2260 -1.4821 4.9424 13 6 5.4641 0.2537 6.1957 14 7 7.2357 -0.8822 4.9497 15 6 7.6806 -1.9645 5.6184 16 8 6.8979 -2.6713 6.2174 17 6 9.1506 -2.2960 5.6228 18 16 9.4284 -3.7940 6.6000 19 6 11.1766 -3.9447 6.4387 20 1 11.7301 -3.2192 5.8611 21 6 11.8423 -4.9958 7.0539 22 7 11.1675 -5.8803 7.7575 23 14 13.6954 -5.1560 6.8824 24 1 14.2132 -4.0430 6.0465 25 1 14.3238 -5.0986 8.2267 26 1 14.0226 -6.4532 6.2380 27 6 3.9784 0.5964 3.6921 28 6 3.6380 1.3621 2.4115 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.6530 0.8208 -2.1207 35 1 5.0663 0.2554 -1.1980 36 1 3.5367 -0.6516 -1.1273 37 1 5.6375 -0.3425 0.3087 38 1 5.9767 1.1745 1.1755 39 1 6.8767 -0.7646 2.4219 40 1 5.2546 -1.4969 2.4652 41 1 6.0537 1.1803 3.6977 42 1 6.0448 1.1762 6.1993 43 1 4.4009 0.4937 6.1929 44 1 5.7031 -0.3290 7.0853 45 1 7.8619 -0.3168 4.4709 46 1 9.4889 -2.4612 4.5998 47 1 9.7085 -1.4682 6.0607 48 1 11.6327 -6.6151 8.1872 49 1 3.7419 1.2136 4.5589 50 1 3.3963 -0.3244 3.7313 51 1 4.2095 2.2895 2.3800 52 1 2.5725 1.5916 2.3980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701010670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:31 Heat of formation + Delta-G solvation = -113.971999 kcal Electronic energy + Delta-G solvation = -28378.628086 eV Core-core repulsion = 24503.020450 eV Total energy + Delta-G solvation = -3875.607636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.13563 -40.23670 -38.68528 -37.11726 -34.69566 -34.57358 -32.63205 -31.98328 -30.60112 -29.53901 -28.19239 -27.65848 -26.68521 -25.56261 -23.64404 -22.69528 -21.58868 -21.15955 -20.61535 -19.78601 -18.00796 -17.62669 -17.45616 -16.99063 -16.87800 -16.45764 -16.31310 -16.05782 -15.89462 -15.57617 -15.03883 -14.90732 -14.86633 -14.56403 -14.47057 -14.36576 -13.93176 -13.81824 -13.56764 -13.37027 -13.15537 -13.05868 -12.91635 -12.82184 -12.67889 -12.58510 -12.35058 -12.30779 -12.06356 -12.02729 -11.89425 -11.70747 -11.50967 -11.23092 -11.15729 -11.06142 -10.82245 -10.45384 -10.26107 -10.04990 -9.10967 -8.66071 -8.34554 -6.12421 1.27824 1.41402 1.47771 1.58853 1.66296 2.26558 2.33024 2.86714 2.99538 3.03299 3.33131 3.60408 3.79153 3.86770 3.97026 4.03999 4.07551 4.27733 4.31530 4.34431 4.37735 4.41884 4.45408 4.47965 4.51473 4.54213 4.57482 4.60080 4.66535 4.72306 4.74566 4.79636 4.88259 4.91964 4.92850 4.95245 5.01545 5.07909 5.10066 5.18029 5.27588 5.38242 5.42224 5.43088 5.49226 5.61395 6.20182 6.20272 6.25990 6.42629 6.56642 7.06747 7.30843 8.74948 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.001877 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.200499 B =14915.576782 C =15409.088380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.066 3.934 4 C 0.082 3.918 5 H 0.065 0.935 6 C -0.142 4.142 7 N -0.541 5.541 8 C 0.058 3.942 9 C -0.110 4.110 10 C -0.079 4.079 11 C 0.149 3.851 12 H 0.057 0.943 13 C -0.159 4.159 14 N -0.707 5.707 15 C 0.535 3.465 16 O -0.567 6.567 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.105 4.105 28 C 0.058 3.942 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.029 0.971 45 H 0.414 0.586 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.271 0.729 49 H 0.087 0.913 50 H 0.056 0.944 51 H 0.043 0.957 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.801 23.226 -18.800 34.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.010 4.010 4 C -0.026 4.026 5 H 0.082 0.918 6 C -0.199 4.199 7 N -0.267 5.267 8 C -0.069 4.069 9 C -0.148 4.148 10 C -0.098 4.098 11 C 0.045 3.955 12 H 0.075 0.925 13 C -0.217 4.217 14 N -0.360 5.360 15 C 0.320 3.680 16 O -0.445 6.445 17 C -0.280 4.280 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.143 4.143 28 C -0.069 4.069 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.049 0.951 45 H 0.251 0.749 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.080 0.920 49 H 0.105 0.895 50 H 0.074 0.926 51 H 0.061 0.939 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.258 21.319 -17.684 33.735 hybrid contribution 2.227 1.190 -0.616 2.599 sum -17.031 22.509 -18.299 33.639 Atomic orbital electron populations 1.22830 0.80607 1.03118 1.00396 1.87979 1.20140 1.28134 1.95386 1.22694 0.92823 0.84859 1.00670 1.21726 0.93757 0.96839 0.90306 0.91768 1.21802 1.01104 1.00538 0.96483 1.61880 1.16142 1.46559 1.02127 1.22112 0.87427 0.98960 0.98421 1.21589 1.00918 0.98446 0.93802 1.21382 0.97898 0.98423 0.92113 1.20999 0.80528 0.98041 0.95928 0.92491 1.22184 1.03085 1.00016 0.96451 1.45834 1.09593 1.27429 1.53165 1.20033 0.89374 0.80511 0.78038 1.90687 1.57958 1.51268 1.44572 1.23376 0.96044 1.03122 1.05496 1.85597 1.09859 1.30322 1.66785 1.23242 0.92304 1.15534 1.38222 0.89914 1.26148 1.05125 0.94157 0.93846 1.70200 1.38369 1.14125 1.32127 0.84892 0.75907 0.78647 0.78411 1.17981 1.19911 1.19946 1.21607 0.94194 1.00870 0.97656 1.22111 1.01124 0.94048 0.89626 0.93247 0.89672 0.93741 0.91826 0.92709 0.91301 0.92111 0.92884 0.90355 0.93938 0.91178 0.93398 0.88965 0.90790 0.89655 0.95139 0.74942 0.87360 0.87330 0.92016 0.89479 0.92565 0.93923 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -6.91 9.80 -148.98 -1.46 -8.37 16 3 C 0.07 0.81 5.41 71.98 0.39 1.20 16 4 C 0.08 1.05 2.47 44.91 0.11 1.16 16 5 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 6 C -0.14 -1.89 8.53 71.98 0.61 -1.28 16 7 N -0.54 -8.48 4.46 -871.13 -3.88 -12.37 16 8 C 0.06 0.89 5.05 86.32 0.44 1.33 16 9 C -0.11 -1.99 5.19 30.65 0.16 -1.83 16 10 C -0.08 -1.27 1.89 -10.71 -0.02 -1.29 16 11 C 0.15 3.43 2.16 44.99 0.10 3.53 16 12 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 13 C -0.16 -3.37 9.13 71.98 0.66 -2.71 16 14 N -0.71 -18.05 4.43 -442.55 -1.96 -20.02 16 15 C 0.53 20.11 7.81 87.66 0.68 20.80 16 16 O -0.57 -26.97 15.52 -3.03 -0.05 -27.02 16 17 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 18 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 19 C -0.55 -31.49 9.50 67.95 0.65 -30.85 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -56.66 13.22 21.65 0.29 -56.37 16 23 Si 1.00 44.01 29.55 68.60 2.03 46.04 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 C -0.11 -1.55 4.95 30.65 0.15 -1.40 16 28 C 0.06 0.76 5.28 86.33 0.46 1.22 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.05 0.59 6.18 -2.39 -0.01 0.58 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.76 6.19 -2.39 -0.01 0.74 16 36 H 0.05 0.96 7.58 -2.39 -0.02 0.94 16 37 H 0.08 1.24 5.85 -2.39 -0.01 1.23 16 38 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 1.24 7.56 -2.39 -0.02 1.22 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.44 6.49 -2.39 -0.02 1.42 16 44 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.41 7.66 8.42 -92.70 -0.78 6.88 16 46 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 47 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 48 H 0.27 15.57 8.31 -92.70 -0.77 14.79 16 49 H 0.09 1.02 6.58 -2.39 -0.02 1.00 16 50 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 52 H 0.08 0.97 6.05 -2.39 -0.01 0.95 16 Total: -1.00 -78.59 415.60 0.45 -78.14 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.11 Total: 21.92 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 6.53 Total: -12.17 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -5.56 Total: -88.75 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.51 Total: -35.39 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -78.59 0.45 -78.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701010670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.831 kcal (2) G-P(sol) polarization free energy of solvation -78.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds