Wall clock time and date at job start Wed Apr 1 2020 04:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47049 * 2 1 4 4 C 1.46499 * 119.99660 * 269.99657 * 3 2 1 5 5 C 1.52995 * 109.47224 * 270.00005 * 4 3 2 6 6 N 1.46904 * 109.47324 * 180.02562 * 5 4 3 7 7 C 1.46904 * 111.00357 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47083 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.54336 * 305.17463 * 8 7 6 10 10 C 1.53173 * 109.54424 * 65.44436 * 8 7 6 11 11 C 1.53098 * 109.16406 * 176.84572 * 10 8 7 12 12 O 1.42909 * 109.41283 * 302.39570 * 11 10 8 13 13 C 1.42902 * 114.09714 * 61.15592 * 12 11 10 14 14 H 1.09002 * 109.48192 * 58.82786 * 13 12 11 15 15 C 1.53002 * 109.47778 * 178.85813 * 13 12 11 16 16 C 1.53089 * 109.41749 * 298.83906 * 13 12 11 17 17 C 1.34778 * 120.00061 * 90.00186 * 3 2 1 18 18 O 1.21278 * 119.99748 * 179.97438 * 17 3 2 19 19 C 1.50697 * 120.00209 * 359.97438 * 17 3 2 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 3 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31634 * 119.99756 * 0.27728 * 23 21 20 25 25 Si 1.86803 * 120.00005 * 180.27923 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99753 * 25 23 21 27 27 H 1.48497 * 109.46782 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00030 * 25 23 21 29 29 H 1.09001 * 109.47421 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47246 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47108 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47349 * 239.99482 * 2 1 3 33 33 H 1.09004 * 109.47108 * 119.99936 * 2 1 3 34 34 H 1.09000 * 109.47398 * 30.00420 * 4 3 2 35 35 H 1.08999 * 109.47169 * 150.00313 * 4 3 2 36 36 H 1.09001 * 109.47502 * 299.99743 * 5 4 3 37 37 H 1.09003 * 109.47416 * 60.00439 * 5 4 3 38 38 H 1.00907 * 110.99830 * 303.95752 * 6 5 4 39 39 H 1.08995 * 109.47226 * 300.00395 * 7 6 5 40 40 H 1.09000 * 109.46585 * 60.00155 * 7 6 5 41 41 H 1.08992 * 109.52316 * 296.75062 * 10 8 7 42 42 H 1.09004 * 109.52134 * 56.94604 * 10 8 7 43 43 H 1.08992 * 109.48136 * 182.40967 * 11 10 8 44 44 H 1.09005 * 109.47905 * 62.37357 * 11 10 8 45 45 H 1.08997 * 109.47426 * 179.97438 * 15 13 12 46 46 H 1.08999 * 109.47264 * 299.94605 * 15 13 12 47 47 H 1.09005 * 109.47051 * 59.94162 * 15 13 12 48 48 H 1.09003 * 109.52333 * 297.70597 * 16 13 12 49 49 H 1.08998 * 109.57689 * 177.54822 * 16 13 12 50 50 H 1.08999 * 109.47278 * 59.99800 * 19 17 3 51 51 H 1.09002 * 109.46837 * 300.00183 * 19 17 3 52 52 H 0.97000 * 119.99219 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7075 1.8313 -1.7104 6 7 3.9526 2.5242 -2.9823 7 6 5.3335 2.3158 -3.4379 8 6 5.5503 3.0513 -4.7618 9 1 4.7994 2.7310 -5.4841 10 6 5.4334 4.5615 -4.5341 11 6 5.7293 5.2921 -5.8466 12 8 7.0318 4.9289 -6.3091 13 6 7.1857 3.5351 -6.5841 14 1 6.4624 3.2319 -7.3412 15 6 8.6027 3.2696 -7.0967 16 6 6.9484 2.7340 -5.3013 17 6 2.2430 2.0166 1.1672 18 8 2.6477 3.1598 1.1671 19 6 1.9913 1.3064 2.4723 20 16 2.3829 2.4156 3.8480 21 6 2.0083 1.3600 5.2082 22 1 1.6533 0.3556 5.0305 23 6 2.1753 1.8173 6.5080 24 7 2.6084 3.0413 6.7246 25 14 1.7856 0.6955 7.9501 26 1 2.6440 -0.5143 7.8822 27 1 2.0449 1.4165 9.2221 28 1 0.3574 0.2929 7.8921 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0956 3.1409 -1.1385 36 1 4.3883 2.2155 -0.9508 37 1 3.8745 0.7621 -1.8407 38 1 3.2912 2.2324 -3.6864 39 1 6.0253 2.7032 -2.6900 40 1 5.5120 1.2500 -3.5805 41 1 4.4236 4.8028 -4.2026 42 1 6.1511 4.8720 -3.7747 43 1 5.6896 6.3685 -5.6803 44 1 4.9870 5.0118 -6.5939 45 1 8.7201 2.2064 -7.3060 46 1 8.7716 3.8401 -8.0100 47 1 9.3257 3.5734 -6.3396 48 1 7.6966 3.0075 -4.5574 49 1 7.0222 1.6682 -5.5174 50 1 2.6211 0.4187 2.5303 51 1 0.9432 1.0126 2.5299 52 1 2.7247 3.3609 7.6330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715721045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:41 Heat of formation + Delta-G solvation = -100.725749 kcal Electronic energy + Delta-G solvation = -27637.267304 eV Core-core repulsion = 23762.234069 eV Total energy + Delta-G solvation = -3875.033235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.95887 -39.59751 -37.03792 -35.76254 -33.95269 -33.06417 -32.42515 -31.12618 -29.76560 -28.62652 -27.53121 -25.54339 -25.13233 -23.48847 -23.37190 -22.39335 -21.58791 -20.43539 -18.95834 -17.65630 -16.76905 -16.68919 -16.37171 -16.25757 -15.76087 -15.41805 -15.15881 -14.80642 -14.76923 -14.65117 -14.02563 -13.99984 -13.73531 -13.54113 -13.36205 -13.06688 -12.88210 -12.75959 -12.53977 -12.50886 -12.43378 -12.12722 -12.06703 -11.81780 -11.70504 -11.44986 -11.20567 -11.16714 -11.14462 -11.03648 -11.03101 -10.82845 -10.75683 -10.53952 -9.81194 -9.74011 -9.34663 -9.05607 -8.70357 -8.54494 -8.22029 -6.49499 -6.21075 -3.91722 2.88427 3.06102 3.23166 3.24545 3.28729 3.46462 3.56109 3.95321 4.20712 4.33676 4.47827 4.52492 4.62867 4.72713 4.83593 4.88474 4.94231 4.96651 5.05737 5.06419 5.13550 5.17233 5.20507 5.24866 5.25323 5.30724 5.32688 5.38058 5.42500 5.45125 5.54453 5.62562 5.66305 5.67038 5.70210 5.75015 5.83053 5.86506 5.92678 5.95747 6.00530 6.05330 6.09899 6.21572 6.61374 6.78554 6.95483 7.11978 7.54645 7.59544 8.35193 8.57936 9.23918 10.86251 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.001753 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.120033 B =15970.565296 C =16771.433828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 N -0.620 5.620 4 C 0.122 3.878 5 C 0.046 3.954 6 N -0.683 5.683 7 C 0.067 3.933 8 C -0.086 4.086 9 H 0.068 0.932 10 C -0.142 4.142 11 C 0.060 3.940 12 O -0.383 6.383 13 C 0.088 3.912 14 H 0.055 0.945 15 C -0.146 4.146 16 C -0.146 4.146 17 C 0.533 3.467 18 O -0.511 6.511 19 C -0.150 4.150 20 S -0.061 6.061 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.027 0.973 38 H 0.336 0.664 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.088 0.912 51 H 0.089 0.911 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 -5.486 -28.417 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 N -0.357 5.357 4 C -0.002 4.002 5 C -0.085 4.085 6 N -0.314 5.314 7 C -0.063 4.063 8 C -0.104 4.104 9 H 0.087 0.913 10 C -0.180 4.180 11 C -0.017 4.017 12 O -0.302 6.302 13 C 0.030 3.970 14 H 0.073 0.927 15 C -0.203 4.203 16 C -0.184 4.184 17 C 0.321 3.679 18 O -0.384 6.384 19 C -0.301 4.301 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.154 0.846 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.106 0.894 51 H 0.107 0.893 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.725 -2.908 -27.982 28.527 hybrid contribution -1.062 -3.356 0.719 3.593 sum 3.663 -6.264 -27.263 28.212 Atomic orbital electron populations 1.22222 0.95926 1.02146 1.02781 1.21523 0.94501 0.82593 1.03029 1.47963 1.67744 1.14390 1.05585 1.21226 0.94524 0.99633 0.84808 1.22336 0.98471 0.95625 0.92018 1.60312 1.04036 1.61689 1.05374 1.21978 0.90517 0.97414 0.96351 1.21190 0.96624 0.96149 0.96481 0.91330 1.22150 1.03811 0.94195 0.97858 1.22630 0.84332 0.99947 0.94770 1.87931 1.32194 1.23869 1.86206 1.22039 0.97713 0.81972 0.95278 0.92727 1.21773 0.95095 1.01640 1.01793 1.22264 0.97466 1.00336 0.98313 1.20350 0.76471 0.86515 0.84589 1.90709 1.43571 1.17422 1.86743 1.23583 1.04727 1.04465 0.97321 1.85407 1.86813 1.17913 0.93310 1.22819 1.51837 1.01513 0.92252 0.91032 1.24989 0.94660 0.95548 0.98347 1.70013 1.42816 1.15650 1.21749 0.86235 0.78933 0.80048 0.80349 1.19967 1.20799 1.19942 0.91636 0.91817 0.92535 0.90929 0.89960 0.91293 0.88948 0.90214 0.95430 0.84641 0.90647 0.95308 0.89522 0.91078 0.88868 0.93523 0.91185 0.91906 0.91719 0.90746 0.91091 0.89413 0.89262 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.11 1.12 5.93 -4.04 -0.02 1.10 16 3 N -0.62 -8.57 2.47 -173.69 -0.43 -9.00 16 4 C 0.12 1.44 5.67 -4.04 -0.02 1.42 16 5 C 0.05 0.51 6.01 -3.82 -0.02 0.49 16 6 N -0.68 -6.31 6.04 -113.78 -0.69 -7.00 16 7 C 0.07 0.57 5.08 -3.82 -0.02 0.55 16 8 C -0.09 -0.63 2.42 -90.44 -0.22 -0.85 16 9 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 10 C -0.14 -1.19 5.27 -26.59 -0.14 -1.33 16 11 C 0.06 0.48 6.84 37.21 0.25 0.73 16 12 O -0.38 -3.68 10.41 -35.23 -0.37 -4.05 16 13 C 0.09 0.65 3.26 -26.68 -0.09 0.56 16 14 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 15 C -0.15 -0.90 9.56 37.16 0.36 -0.54 16 16 C -0.15 -1.02 4.71 -26.59 -0.13 -1.15 16 17 C 0.53 10.11 7.69 -10.99 -0.08 10.02 16 18 O -0.51 -11.72 15.44 5.56 0.09 -11.63 16 19 C -0.15 -3.06 4.71 36.00 0.17 -2.89 16 20 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 21 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 22 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 25 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.75 7.22 -51.93 -0.37 0.37 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.08 0.90 6.44 -51.93 -0.33 0.56 16 34 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 35 H 0.09 1.33 7.42 -51.93 -0.39 0.94 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.34 2.49 8.73 -39.29 -0.34 2.15 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 1.66 7.40 -51.92 -0.38 1.27 16 51 H 0.09 1.69 7.18 -51.91 -0.37 1.32 16 52 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 426.22 15.07 6.42 6.42 Total: -1.00 -34.06 426.22 -10.61 -44.67 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -9.75 Total: -0.27 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 0.61 Total: -6.16 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.38 Total: -41.47 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.28 Total: -15.68 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -34.06 -10.61 -44.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715721045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.053 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds