Wall clock time and date at job start Wed Apr 1 2020 04:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47049 * 2 1 4 4 C 1.46499 * 119.99660 * 269.99657 * 3 2 1 5 5 C 1.52995 * 109.47224 * 270.00005 * 4 3 2 6 6 N 1.46904 * 109.47324 * 180.02562 * 5 4 3 7 7 C 1.46904 * 111.00357 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47083 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.54336 * 305.17463 * 8 7 6 10 10 C 1.53173 * 109.54424 * 65.44436 * 8 7 6 11 11 C 1.53098 * 109.16406 * 176.84572 * 10 8 7 12 12 O 1.42909 * 109.41283 * 302.39570 * 11 10 8 13 13 C 1.42902 * 114.09714 * 61.15592 * 12 11 10 14 14 H 1.09002 * 109.48192 * 58.82786 * 13 12 11 15 15 C 1.53002 * 109.47778 * 178.85813 * 13 12 11 16 16 C 1.53089 * 109.41749 * 298.83906 * 13 12 11 17 17 C 1.34778 * 120.00061 * 90.00186 * 3 2 1 18 18 O 1.21278 * 119.99748 * 179.97438 * 17 3 2 19 19 C 1.50697 * 120.00209 * 359.97438 * 17 3 2 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 3 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31634 * 119.99756 * 0.27728 * 23 21 20 25 25 Si 1.86803 * 120.00005 * 180.27923 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99753 * 25 23 21 27 27 H 1.48497 * 109.46782 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00030 * 25 23 21 29 29 H 1.09001 * 109.47421 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47246 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47108 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47349 * 239.99482 * 2 1 3 33 33 H 1.09004 * 109.47108 * 119.99936 * 2 1 3 34 34 H 1.09000 * 109.47398 * 30.00420 * 4 3 2 35 35 H 1.08999 * 109.47169 * 150.00313 * 4 3 2 36 36 H 1.09001 * 109.47502 * 299.99743 * 5 4 3 37 37 H 1.09003 * 109.47416 * 60.00439 * 5 4 3 38 38 H 1.00907 * 110.99830 * 303.95752 * 6 5 4 39 39 H 1.08995 * 109.47226 * 300.00395 * 7 6 5 40 40 H 1.09000 * 109.46585 * 60.00155 * 7 6 5 41 41 H 1.08992 * 109.52316 * 296.75062 * 10 8 7 42 42 H 1.09004 * 109.52134 * 56.94604 * 10 8 7 43 43 H 1.08992 * 109.48136 * 182.40967 * 11 10 8 44 44 H 1.09005 * 109.47905 * 62.37357 * 11 10 8 45 45 H 1.08997 * 109.47426 * 179.97438 * 15 13 12 46 46 H 1.08999 * 109.47264 * 299.94605 * 15 13 12 47 47 H 1.09005 * 109.47051 * 59.94162 * 15 13 12 48 48 H 1.09003 * 109.52333 * 297.70597 * 16 13 12 49 49 H 1.08998 * 109.57689 * 177.54822 * 16 13 12 50 50 H 1.08999 * 109.47278 * 59.99800 * 19 17 3 51 51 H 1.09002 * 109.46837 * 300.00183 * 19 17 3 52 52 H 0.97000 * 119.99219 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7075 1.8313 -1.7104 6 7 3.9526 2.5242 -2.9823 7 6 5.3335 2.3158 -3.4379 8 6 5.5503 3.0513 -4.7618 9 1 4.7994 2.7310 -5.4841 10 6 5.4334 4.5615 -4.5341 11 6 5.7293 5.2921 -5.8466 12 8 7.0318 4.9289 -6.3091 13 6 7.1857 3.5351 -6.5841 14 1 6.4624 3.2319 -7.3412 15 6 8.6027 3.2696 -7.0967 16 6 6.9484 2.7340 -5.3013 17 6 2.2430 2.0166 1.1672 18 8 2.6477 3.1598 1.1671 19 6 1.9913 1.3064 2.4723 20 16 2.3829 2.4156 3.8480 21 6 2.0083 1.3600 5.2082 22 1 1.6533 0.3556 5.0305 23 6 2.1753 1.8173 6.5080 24 7 2.6084 3.0413 6.7246 25 14 1.7856 0.6955 7.9501 26 1 2.6440 -0.5143 7.8822 27 1 2.0449 1.4165 9.2221 28 1 0.3574 0.2929 7.8921 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0956 3.1409 -1.1385 36 1 4.3883 2.2155 -0.9508 37 1 3.8745 0.7621 -1.8407 38 1 3.2912 2.2324 -3.6864 39 1 6.0253 2.7032 -2.6900 40 1 5.5120 1.2500 -3.5805 41 1 4.4236 4.8028 -4.2026 42 1 6.1511 4.8720 -3.7747 43 1 5.6896 6.3685 -5.6803 44 1 4.9870 5.0118 -6.5939 45 1 8.7201 2.2064 -7.3060 46 1 8.7716 3.8401 -8.0100 47 1 9.3257 3.5734 -6.3396 48 1 7.6966 3.0075 -4.5574 49 1 7.0222 1.6682 -5.5174 50 1 2.6211 0.4187 2.5303 51 1 0.9432 1.0126 2.5299 52 1 2.7247 3.3609 7.6330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715721045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:40 Heat of formation + Delta-G solvation = -123.312802 kcal Electronic energy + Delta-G solvation = -27638.246753 eV Core-core repulsion = 23762.234069 eV Total energy + Delta-G solvation = -3876.012684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99081 -40.54442 -37.94769 -36.90647 -34.71975 -34.59079 -33.64130 -32.06537 -31.13256 -29.47311 -28.40296 -27.64716 -25.96392 -24.32936 -24.12264 -23.40063 -22.21093 -21.09129 -20.42033 -19.43166 -18.14699 -17.47422 -17.31342 -17.09683 -16.88527 -16.58698 -16.36768 -16.16022 -15.79259 -15.58376 -15.31995 -14.92969 -14.83628 -14.55584 -14.43923 -14.34994 -14.04797 -13.50751 -13.46566 -13.38989 -13.19389 -13.16555 -13.02843 -12.88009 -12.74814 -12.72666 -12.63800 -12.62533 -12.13437 -12.01837 -12.00297 -11.81529 -11.72955 -11.46788 -11.15892 -11.13258 -10.88514 -10.37771 -10.27518 -9.76705 -9.40048 -8.68281 -8.34867 -6.13699 1.24882 1.43353 1.45116 1.54812 1.57099 2.06191 2.27166 2.88906 2.99000 3.15485 3.27066 3.66968 3.70578 3.84874 3.92434 4.01713 4.04027 4.07032 4.12501 4.19348 4.27715 4.34265 4.38937 4.42798 4.45718 4.48100 4.55991 4.58240 4.64040 4.65988 4.78656 4.81048 4.83352 4.86691 4.90800 4.95487 4.98220 5.01736 5.09510 5.14723 5.28388 5.32647 5.36315 5.40507 5.44311 5.60233 5.94591 6.18788 6.27821 6.35931 6.49731 7.05876 7.15664 8.74138 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.001753 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.120033 B =15970.565296 C =16771.433828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.123 3.877 5 C 0.058 3.942 6 N -0.688 5.688 7 C 0.071 3.929 8 C -0.079 4.079 9 H 0.086 0.914 10 C -0.140 4.140 11 C 0.059 3.941 12 O -0.406 6.406 13 C 0.082 3.918 14 H 0.067 0.933 15 C -0.145 4.145 16 C -0.142 4.142 17 C 0.530 3.470 18 O -0.563 6.563 19 C -0.123 4.123 20 S -0.154 6.154 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.261 1.261 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.047 0.953 38 H 0.353 0.647 39 H 0.050 0.950 40 H 0.042 0.958 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.089 0.911 50 H 0.105 0.895 51 H 0.105 0.895 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.573 -8.916 -30.416 31.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.000 4.000 5 C -0.072 4.072 6 N -0.321 5.321 7 C -0.058 4.058 8 C -0.097 4.097 9 H 0.104 0.896 10 C -0.177 4.177 11 C -0.017 4.017 12 O -0.326 6.326 13 C 0.024 3.976 14 H 0.085 0.915 15 C -0.202 4.202 16 C -0.180 4.180 17 C 0.318 3.682 18 O -0.441 6.441 19 C -0.274 4.274 20 S 0.073 5.927 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.186 1.186 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.172 0.828 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.107 0.893 50 H 0.124 0.876 51 H 0.124 0.876 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.497 -6.385 -30.040 30.910 hybrid contribution -0.696 -2.317 1.178 2.691 sum 2.801 -8.702 -28.863 30.276 Atomic orbital electron populations 1.22191 0.94965 1.03520 1.01988 1.21881 0.95232 0.80369 1.04828 1.47955 1.65786 1.15572 1.04578 1.21359 0.96047 0.98089 0.84498 1.22081 0.96802 0.96495 0.91864 1.60196 1.04857 1.61857 1.05183 1.21919 0.89564 0.98158 0.96184 1.21145 0.97440 0.94997 0.96147 0.89595 1.22090 1.02711 0.95341 0.97592 1.22674 0.84255 1.00054 0.94702 1.87908 1.32991 1.25356 1.86337 1.22228 0.98713 0.80978 0.95636 0.91492 1.21796 0.94163 1.02885 1.01347 1.22236 0.96623 1.01358 0.97771 1.20156 0.76501 0.85919 0.85627 1.90693 1.46338 1.19583 1.87486 1.23393 1.05841 1.02995 0.95147 1.85607 1.87611 1.22134 0.97357 1.23159 1.51847 1.01798 0.92631 0.89907 1.26147 0.94109 0.97194 1.01699 1.70189 1.44115 1.17939 1.22518 0.85002 0.79344 0.77802 0.75837 1.18597 1.20403 1.18559 0.89181 0.94406 0.91548 0.87129 0.90244 0.87058 0.91946 0.94328 0.93502 0.82796 0.93101 0.93977 0.90022 0.93415 0.88795 0.92004 0.89253 0.91932 0.92734 0.92315 0.89268 0.87638 0.87646 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 71.98 0.74 -1.97 16 2 C 0.10 1.73 5.93 86.38 0.51 2.24 16 3 N -0.60 -15.81 2.47 -821.83 -2.03 -17.84 16 4 C 0.12 2.71 5.67 86.38 0.49 3.20 16 5 C 0.06 1.22 6.01 86.30 0.52 1.74 16 6 N -0.69 -11.77 6.04 -513.89 -3.11 -14.87 16 7 C 0.07 1.14 5.08 86.30 0.44 1.58 16 8 C -0.08 -1.06 2.42 -10.68 -0.03 -1.08 16 9 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 10 C -0.14 -2.34 5.27 30.68 0.16 -2.18 16 11 C 0.06 0.92 6.84 72.01 0.49 1.41 16 12 O -0.41 -7.63 10.41 -148.98 -1.55 -9.18 16 13 C 0.08 1.10 3.26 30.62 0.10 1.20 16 14 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 15 C -0.14 -1.61 9.56 71.98 0.69 -0.92 16 16 C -0.14 -1.81 4.71 30.68 0.14 -1.66 16 17 C 0.53 20.39 7.69 87.66 0.67 21.06 16 18 O -0.56 -27.15 15.44 -3.02 -0.05 -27.20 16 19 C -0.12 -5.01 4.71 71.23 0.34 -4.68 16 20 S -0.15 -8.75 20.57 -56.49 -1.16 -9.91 16 21 C -0.55 -31.50 9.50 67.96 0.65 -30.86 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.76 5.49 84.86 0.47 1.23 16 24 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 25 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.04 0.81 7.22 -2.39 -0.02 0.79 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.11 1.20 8.07 -2.39 -0.02 1.18 16 33 H 0.08 1.48 6.44 -2.38 -0.02 1.47 16 34 H 0.11 1.56 8.07 -2.39 -0.02 1.54 16 35 H 0.06 1.81 7.42 -2.39 -0.02 1.79 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.35 4.16 8.73 -89.69 -0.78 3.38 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.08 1.44 7.87 -2.39 -0.02 1.42 16 42 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.11 3.91 7.40 -2.39 -0.02 3.89 16 51 H 0.11 3.94 7.18 -2.39 -0.02 3.93 16 52 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -79.03 426.22 0.89 -78.14 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.09 Total: 21.10 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 6.38 Total: -9.69 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -4.85 Total: -88.99 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -1.60 Total: -36.38 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -79.03 0.89 -78.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715721045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.172 kcal (2) G-P(sol) polarization free energy of solvation -79.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds