Wall clock time and date at job start Wed Apr 1 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46836 * 2 1 4 4 C 1.52998 * 109.47144 * 120.00023 * 2 1 3 5 5 N 1.46494 * 109.47339 * 175.30659 * 4 2 1 6 6 C 1.34771 * 120.00163 * 175.19574 * 5 4 2 7 7 O 1.21283 * 120.00008 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99906 * 180.02562 * 6 5 4 9 9 S 1.81007 * 109.46942 * 179.97438 * 8 6 5 10 10 C 1.76198 * 99.99958 * 179.97438 * 9 8 6 11 11 H 1.08010 * 119.99938 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00198 * 179.97438 * 10 9 8 13 13 N 1.31634 * 119.99804 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 119.99702 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47237 * 89.99951 * 14 12 10 16 16 H 1.48499 * 109.47173 * 209.99483 * 14 12 10 17 17 H 1.48497 * 109.47359 * 330.00017 * 14 12 10 18 18 N 1.46898 * 109.46959 * 240.00183 * 2 1 3 19 19 C 1.46897 * 111.00330 * 72.37866 * 18 2 1 20 20 C 1.46904 * 111.00147 * 308.42603 * 18 2 1 21 21 C 1.52995 * 109.47424 * 190.00306 * 20 18 2 22 22 C 1.52998 * 109.47257 * 179.97438 * 21 20 18 23 23 C 1.53180 * 109.54177 * 294.55585 * 22 21 20 24 24 C 1.53093 * 109.16128 * 183.15133 * 23 22 21 25 25 O 1.42904 * 109.41633 * 57.61054 * 24 23 22 26 26 C 1.42903 * 114.09413 * 298.84036 * 25 24 23 27 27 C 1.53094 * 109.41670 * 61.16126 * 26 25 24 28 28 H 1.08994 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47078 * 300.00122 * 1 2 3 30 30 H 1.09004 * 109.47005 * 59.99635 * 1 2 3 31 31 H 1.08998 * 109.46895 * 295.30797 * 4 2 1 32 32 H 1.09003 * 109.46658 * 55.30199 * 4 2 1 33 33 H 0.97009 * 119.99802 * 355.19057 * 5 4 2 34 34 H 1.08999 * 109.47434 * 299.99339 * 8 6 5 35 35 H 1.08998 * 109.47705 * 59.99967 * 8 6 5 36 36 H 0.97004 * 119.99802 * 180.02562 * 13 12 10 37 37 H 1.08993 * 109.47589 * 290.02440 * 19 18 2 38 38 H 1.09001 * 109.46724 * 50.02331 * 19 18 2 39 39 H 1.09004 * 109.47302 * 170.02048 * 19 18 2 40 40 H 1.08995 * 109.47041 * 69.99811 * 20 18 2 41 41 H 1.09005 * 109.46508 * 310.00700 * 20 18 2 42 42 H 1.09003 * 109.46781 * 300.00143 * 21 20 18 43 43 H 1.08998 * 109.46973 * 59.99975 * 21 20 18 44 44 H 1.08996 * 109.54273 * 54.82285 * 22 21 20 45 45 H 1.09003 * 109.52485 * 303.05591 * 23 22 21 46 46 H 1.08999 * 109.52541 * 63.24927 * 23 22 21 47 47 H 1.08997 * 109.48612 * 297.62867 * 24 23 22 48 48 H 1.08998 * 109.48009 * 177.58907 * 24 23 22 49 49 H 1.08994 * 109.48589 * 301.17336 * 26 25 24 50 50 H 1.09004 * 109.49020 * 181.14155 * 26 25 24 51 51 H 1.09001 * 109.52130 * 182.48386 * 27 26 25 52 52 H 1.09002 * 109.52679 * 62.29156 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5006 -0.8199 1.1941 6 6 4.1812 -1.3334 2.2378 7 8 3.5846 -1.7134 3.2230 8 6 5.6838 -1.4344 2.1813 9 16 6.2982 -2.1589 3.7220 10 6 8.0288 -2.1598 3.3910 11 1 8.3988 -1.7796 2.4502 12 6 8.9166 -2.6482 4.3395 13 7 10.2095 -2.6493 4.0919 14 14 8.2767 -3.3051 5.9668 15 1 8.0001 -4.7585 5.8396 16 1 9.2959 -3.0860 7.0243 17 1 7.0252 -2.5931 6.3304 18 7 2.0197 -0.6925 -1.1995 19 6 1.8038 0.1221 -2.4027 20 6 1.3915 -2.0132 -1.3382 21 6 2.0988 -2.8009 -2.4428 22 6 1.4450 -4.1766 -2.5868 23 6 1.6778 -4.9907 -1.3103 24 6 1.0890 -6.3919 -1.4936 25 8 1.6892 -7.0144 -2.6313 26 6 1.4643 -6.3225 -3.8613 27 6 2.0683 -4.9185 -3.7732 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7470 -0.1612 2.1372 32 1 1.6096 -1.7217 1.2922 33 1 3.9779 -0.5157 0.4062 34 1 5.9742 -2.0656 1.3415 35 1 6.1103 -0.4396 2.0527 36 1 10.8299 -2.9909 4.7547 37 1 0.7373 0.1697 -2.6227 38 1 2.1850 1.1291 -2.2329 39 1 2.3289 -0.3280 -3.2452 40 1 0.3398 -1.8899 -1.5963 41 1 1.4733 -2.5551 -0.3960 42 1 2.0170 -2.2588 -3.3849 43 1 3.1506 -2.9241 -2.1846 44 1 0.3747 -4.0559 -2.7538 45 1 2.7479 -5.0677 -1.1174 46 1 1.1897 -4.4976 -0.4697 47 1 0.0124 -6.3168 -1.6463 48 1 1.2894 -6.9896 -0.6044 49 1 0.3927 -6.2463 -4.0449 50 1 1.9351 -6.8700 -4.6779 51 1 1.8594 -4.3737 -4.6939 52 1 3.1462 -4.9939 -3.6300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725153678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:02 Heat of formation + Delta-G solvation = -122.227887 kcal Electronic energy + Delta-G solvation = -28629.540485 eV Core-core repulsion = 24753.574847 eV Total energy + Delta-G solvation = -3875.965638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88334 -40.40644 -39.36630 -36.31581 -35.18488 -34.66501 -32.59185 -32.04739 -30.93451 -30.17168 -27.89153 -27.31276 -26.62228 -24.98052 -24.46883 -22.75175 -21.66247 -20.94244 -20.56599 -19.79433 -17.80165 -17.51021 -17.29797 -17.09203 -17.00600 -16.95015 -16.31698 -16.09682 -15.89690 -15.62417 -15.54192 -15.34068 -14.93035 -14.69531 -14.62804 -14.23586 -14.17047 -13.60530 -13.39023 -13.36290 -13.31934 -13.19438 -13.06505 -12.98650 -12.82338 -12.80589 -12.60068 -12.26030 -12.10907 -12.02390 -11.85676 -11.74718 -11.65282 -11.16888 -11.16630 -11.11026 -10.96764 -10.52808 -10.43232 -10.03485 -9.23137 -8.98426 -8.51137 -6.21570 1.00374 1.31759 1.47508 1.57395 1.62487 2.24818 2.31769 2.72878 2.87085 2.92117 2.99912 3.65612 3.74415 3.83168 3.91773 3.94595 4.06542 4.08206 4.17957 4.24313 4.29162 4.31875 4.37789 4.45131 4.48867 4.54149 4.59461 4.61412 4.67325 4.70766 4.74685 4.78464 4.79742 4.85956 4.89038 4.96830 5.03136 5.09459 5.12552 5.17294 5.21517 5.25719 5.32384 5.48926 5.51962 5.71317 6.11858 6.12320 6.16328 6.28258 6.58039 6.94077 7.27169 8.61494 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009159 B = 0.002714 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.343493 B =10316.257818 C =12221.006979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.099 0.901 4 C 0.130 3.870 5 N -0.698 5.698 6 C 0.533 3.467 7 O -0.568 6.568 8 C -0.109 4.109 9 S -0.174 6.174 10 C -0.529 4.529 11 H 0.061 0.939 12 C 0.045 3.955 13 N -0.918 5.918 14 Si 0.915 3.085 15 H -0.263 1.263 16 H -0.258 1.258 17 H -0.236 1.236 18 N -0.545 5.545 19 C 0.023 3.977 20 C 0.055 3.945 21 C -0.101 4.101 22 C -0.082 4.082 23 C -0.151 4.151 24 C 0.057 3.943 25 O -0.411 6.411 26 C 0.054 3.946 27 C -0.147 4.147 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.418 0.582 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.277 0.723 37 H 0.035 0.965 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.062 0.938 50 H 0.100 0.900 51 H 0.091 0.909 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.811 2.993 -20.012 32.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.032 4.032 3 H 0.117 0.883 4 C 0.006 3.994 5 N -0.351 5.351 6 C 0.318 3.682 7 O -0.447 6.447 8 C -0.260 4.260 9 S 0.052 5.948 10 C -0.676 4.676 11 H 0.079 0.921 12 C -0.160 4.160 13 N -0.556 5.556 14 Si 0.737 3.263 15 H -0.187 1.187 16 H -0.183 1.183 17 H -0.160 1.160 18 N -0.269 5.269 19 C -0.124 4.124 20 C -0.073 4.073 21 C -0.139 4.139 22 C -0.101 4.101 23 C -0.189 4.189 24 C -0.019 4.019 25 O -0.330 6.330 26 C -0.022 4.022 27 C -0.185 4.185 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.255 0.745 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.108 0.892 49 H 0.080 0.920 50 H 0.118 0.882 51 H 0.109 0.891 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.011 2.117 -18.299 31.874 hybrid contribution 0.562 0.490 -0.782 1.080 sum -25.449 2.607 -19.081 31.915 Atomic orbital electron populations 1.22326 0.95065 1.02818 1.03439 1.21920 0.94363 0.98292 0.88656 0.88274 1.21458 0.79376 1.00434 0.98109 1.45585 1.07720 1.63267 1.18526 1.19910 0.88458 0.76871 0.82950 1.90676 1.70690 1.49650 1.33684 1.23245 0.95164 1.05872 1.01762 1.84658 1.04262 1.82845 1.22998 1.22471 0.90835 1.48017 1.06295 0.92105 1.25575 0.94315 0.94429 1.01708 1.70023 1.02538 1.45890 1.37168 0.85859 0.80443 0.80348 0.79675 1.18725 1.18268 1.15994 1.62103 1.58344 1.03443 1.03030 1.22450 0.99974 0.97879 0.92134 1.22193 0.96310 0.89493 0.99285 1.21525 0.99476 0.94190 0.98742 1.21143 1.00512 0.94288 0.94139 1.22259 1.01353 0.96349 0.98902 1.22666 0.96888 0.93606 0.88757 1.87918 1.76968 1.51329 1.16801 1.22751 1.00423 0.92817 0.86210 1.22216 1.00588 0.96399 0.99309 0.92147 0.91232 0.90944 0.91650 0.92736 0.74504 0.87414 0.87084 0.91366 0.94669 0.90888 0.90878 0.93499 0.91876 0.90697 0.92860 0.90025 0.93020 0.90568 0.91815 0.89213 0.91976 0.88226 0.89094 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.42 71.98 0.61 -1.23 16 2 C 0.08 1.01 2.47 44.92 0.11 1.12 16 3 H 0.10 1.19 7.88 -2.39 -0.02 1.17 16 4 C 0.13 2.67 4.93 86.38 0.43 3.09 16 5 N -0.70 -17.23 5.41 -463.08 -2.51 -19.74 16 6 C 0.53 18.84 7.85 87.66 0.69 19.53 16 7 O -0.57 -24.65 15.86 -3.04 -0.05 -24.70 16 8 C -0.11 -4.28 6.16 71.24 0.44 -3.84 16 9 S -0.17 -9.00 18.55 -56.49 -1.05 -10.04 16 10 C -0.53 -31.37 10.04 67.95 0.68 -30.69 16 11 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 12 C 0.04 2.68 5.50 84.86 0.47 3.15 16 13 N -0.92 -56.74 13.97 21.65 0.30 -56.44 16 14 Si 0.91 45.71 27.74 68.60 1.90 47.61 16 15 H -0.26 -12.81 7.11 99.48 0.71 -12.11 16 16 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 18 N -0.55 -7.08 4.09 -897.06 -3.66 -10.74 16 19 C 0.02 0.22 8.87 127.69 1.13 1.35 16 20 C 0.05 0.73 3.59 86.30 0.31 1.04 16 21 C -0.10 -1.35 4.61 30.59 0.14 -1.21 16 22 C -0.08 -1.07 2.27 -10.67 -0.02 -1.10 16 23 C -0.15 -2.58 5.10 30.69 0.16 -2.43 16 24 C 0.06 0.98 6.84 72.01 0.49 1.47 16 25 O -0.41 -8.52 10.77 -148.98 -1.60 -10.12 16 26 C 0.05 0.76 6.84 72.01 0.49 1.26 16 27 C -0.15 -1.92 5.42 30.69 0.17 -1.75 16 28 H 0.06 0.67 6.54 -2.39 -0.02 0.65 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.61 7.00 -2.38 -0.02 0.59 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.23 6.65 -2.39 -0.02 1.22 16 33 H 0.42 8.61 8.08 -92.70 -0.75 7.86 16 34 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 35 H 0.11 4.00 8.14 -2.40 -0.02 3.99 16 36 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.03 0.28 7.07 -2.39 -0.02 0.27 16 38 H 0.07 0.63 7.90 -2.39 -0.02 0.61 16 39 H 0.07 0.68 6.77 -2.39 -0.02 0.67 16 40 H 0.05 0.53 6.77 -2.39 -0.02 0.51 16 41 H 0.06 1.08 4.81 -2.38 -0.01 1.06 16 42 H 0.07 0.82 6.69 -2.39 -0.02 0.80 16 43 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.08 1.25 6.75 -2.39 -0.02 1.23 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.31 411.34 -0.27 -74.59 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.11 Total: 19.83 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 6.29 Total: -10.24 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -5.87 Total: -86.92 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.65 Total: -34.82 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.61 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.04 kcal Total: -74.31 -0.27 -74.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725153678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.642 kcal (2) G-P(sol) polarization free energy of solvation -74.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds