Wall clock time and date at job start Wed Apr 1 2020 03:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46981 * 2 1 4 4 O 1.42897 * 109.47606 * 120.00872 * 2 1 3 5 5 C 1.42901 * 113.99553 * 269.99877 * 4 2 1 6 6 C 1.50699 * 109.47081 * 179.97438 * 5 4 2 7 7 C 1.38242 * 120.00365 * 269.72985 * 6 5 4 8 8 C 1.38233 * 119.99932 * 179.76276 * 7 6 5 9 9 C 1.38237 * 120.00081 * 0.50703 * 8 7 6 10 10 C 1.38234 * 119.99875 * 359.74514 * 9 8 7 11 11 C 1.38237 * 120.00267 * 0.02562 * 10 9 8 12 12 C 1.50706 * 109.47051 * 240.00637 * 2 1 3 13 13 O 1.21277 * 119.99863 * 245.00020 * 12 2 1 14 14 N 1.34779 * 119.99666 * 64.99710 * 12 2 1 15 15 C 1.46498 * 119.99509 * 180.02562 * 14 12 2 16 16 C 1.50708 * 109.47154 * 179.72451 * 15 14 12 17 17 C 1.29455 * 117.69254 * 94.99461 * 16 15 14 18 18 C 1.50320 * 123.64900 * 180.85836 * 17 16 15 19 19 N 1.47012 * 109.16809 * 349.02966 * 18 17 16 20 20 C 1.36936 * 121.37379 * 222.97122 * 19 18 17 21 21 H 1.07999 * 120.00419 * 155.96342 * 20 19 18 22 22 C 1.38811 * 119.99741 * 335.96329 * 20 19 18 23 23 N 1.31620 * 120.00317 * 344.51770 * 22 20 19 24 24 Si 1.86803 * 119.99738 * 164.51995 * 22 20 19 25 25 H 1.48503 * 109.47226 * 89.99970 * 24 22 20 26 26 H 1.48503 * 109.47112 * 209.99875 * 24 22 20 27 27 H 1.48499 * 109.47416 * 330.00001 * 24 22 20 28 28 C 1.47339 * 117.25032 * 42.93891 * 19 18 17 29 29 C 1.49963 * 117.69230 * 274.73698 * 16 15 14 30 30 H 1.09003 * 109.46617 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46833 * 299.99127 * 1 2 3 32 32 H 1.08993 * 109.47363 * 59.99791 * 1 2 3 33 33 H 1.08994 * 109.47433 * 299.99711 * 5 4 2 34 34 H 1.08999 * 109.47016 * 59.99868 * 5 4 2 35 35 H 1.08001 * 119.99564 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.99927 * 180.22863 * 8 7 6 37 37 H 1.08001 * 119.99594 * 179.71928 * 9 8 7 38 38 H 1.08001 * 119.99863 * 179.97438 * 10 9 8 39 39 H 1.07995 * 119.99754 * 179.97438 * 11 10 9 40 40 H 0.96998 * 120.00529 * 359.72139 * 14 12 2 41 41 H 1.09000 * 109.47080 * 299.72059 * 15 14 12 42 42 H 1.09004 * 109.47451 * 59.72370 * 15 14 12 43 43 H 1.08000 * 118.17767 * 0.88479 * 17 16 15 44 44 H 1.09002 * 109.52266 * 108.93176 * 18 17 16 45 45 H 1.08994 * 109.52815 * 229.11651 * 18 17 16 46 46 H 0.97000 * 119.99918 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.77190 * 57.81663 * 28 19 18 48 48 H 1.08998 * 109.77890 * 178.62491 * 28 19 18 49 49 H 1.08996 * 109.32185 * 281.28867 * 29 16 15 50 50 H 1.09006 * 109.31673 * 40.71824 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6738 1.1666 5 6 2.2002 0.1827 2.2940 6 6 2.7005 -0.6287 3.4612 7 6 1.8013 -1.1954 4.3451 8 6 2.2602 -1.9438 5.4130 9 6 3.6185 -2.1167 5.6029 10 6 4.5178 -1.5457 4.7219 11 6 4.0588 -0.8012 3.6514 12 6 2.0324 -0.7103 -1.2306 13 8 2.6530 -1.7466 -1.1217 14 7 1.7918 -0.1939 -2.4521 15 6 2.2797 -0.8847 -3.6483 16 6 1.8752 -0.1098 -4.8760 17 6 2.7322 0.7255 -5.3696 18 6 2.4627 1.5794 -6.5771 19 7 1.2250 1.1219 -7.2253 20 6 1.1350 1.0032 -8.5865 21 1 0.4125 0.3298 -9.0233 22 6 1.9724 1.7486 -9.4050 23 7 2.6300 2.7767 -8.9121 24 14 2.1661 1.2924 -11.2061 25 1 1.1477 2.0130 -12.0116 26 1 3.5244 1.6735 -11.6699 27 1 1.9803 -0.1719 -11.3687 28 6 0.0857 0.7957 -6.3498 29 6 0.5106 -0.3650 -5.4430 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 2.9321 0.9511 2.0450 34 1 1.2540 0.6544 2.5588 35 1 0.7403 -1.0563 4.1994 36 1 1.5576 -2.3896 6.1014 37 1 3.9770 -2.6977 6.4398 38 1 5.5790 -1.6805 4.8706 39 1 4.7615 -0.3548 2.9634 40 1 1.2919 0.6328 -2.5394 41 1 3.3664 -0.9589 -3.6072 42 1 1.8485 -1.8849 -3.6916 43 1 3.6946 0.8135 -4.8874 44 1 2.3501 2.6192 -6.2701 45 1 3.2937 1.4934 -7.2770 46 1 3.2155 3.2973 -9.4841 47 1 -0.1755 1.6644 -5.7455 48 1 -0.7699 0.4953 -6.9545 49 1 0.5266 -1.2901 -6.0191 50 1 -0.2060 -0.4639 -4.6276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725828617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:28 Heat of formation + Delta-G solvation = -36.980233 kcal Electronic energy + Delta-G solvation = -28803.318225 eV Core-core repulsion = 24795.605252 eV Total energy + Delta-G solvation = -4007.712974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.13352 -40.21458 -39.41831 -38.41922 -36.39778 -34.64744 -33.53026 -32.64452 -31.80199 -31.66229 -31.32424 -28.55720 -27.16077 -26.18571 -24.74681 -24.23985 -23.48884 -22.78908 -22.27153 -21.47166 -19.51504 -18.78076 -18.20485 -17.62200 -17.30462 -16.99617 -16.91844 -16.48773 -16.23693 -16.17358 -15.72371 -15.50626 -15.26028 -15.16349 -14.95145 -14.47898 -14.29616 -14.26590 -13.94438 -13.83245 -13.68687 -13.40510 -13.30316 -13.25629 -13.01127 -12.89476 -12.79288 -12.57614 -12.41869 -12.24076 -12.10433 -11.93030 -11.83557 -11.70226 -11.27509 -11.07041 -10.68614 -10.55866 -10.13655 -9.83212 -9.77895 -9.63836 -8.73976 -7.88343 -5.28958 0.31103 0.49040 1.14946 1.46773 1.48929 1.55787 1.57828 2.08068 2.51504 2.74724 3.19589 3.29200 3.62598 3.66708 3.85206 3.88288 3.89392 3.96680 3.99305 4.10207 4.14537 4.27916 4.34818 4.38996 4.43796 4.54727 4.63055 4.63965 4.72315 4.74260 4.75511 4.82232 4.85389 4.92736 5.06712 5.11340 5.14243 5.21758 5.22743 5.33836 5.41553 5.49118 5.53565 5.59946 5.62036 5.65191 5.77027 6.04233 6.10204 6.16506 6.34433 6.55542 7.14204 7.20314 7.84508 8.37712 9.20169 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.031744 B = 0.001623 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.838274 B =17244.946227 C =17538.549961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.073 3.927 3 H 0.116 0.884 4 O -0.381 6.381 5 C 0.097 3.903 6 C -0.109 4.109 7 C -0.110 4.110 8 C -0.132 4.132 9 C -0.122 4.122 10 C -0.135 4.135 11 C -0.117 4.117 12 C 0.509 3.491 13 O -0.576 6.576 14 N -0.706 5.706 15 C 0.168 3.832 16 C -0.138 4.138 17 C -0.141 4.141 18 C 0.205 3.795 19 N -0.615 5.615 20 C -0.257 4.257 21 H 0.070 0.930 22 C -0.053 4.053 23 N -0.938 5.938 24 Si 0.966 3.034 25 H -0.284 1.284 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.139 3.861 29 C -0.084 4.084 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.415 0.585 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.017 0.983 45 H 0.056 0.944 46 H 0.249 0.751 47 H 0.032 0.968 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.224 -4.206 29.203 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 H 0.133 0.867 4 O -0.301 6.301 5 C 0.022 3.978 6 C -0.109 4.109 7 C -0.128 4.128 8 C -0.150 4.150 9 C -0.140 4.140 10 C -0.153 4.153 11 C -0.135 4.135 12 C 0.295 3.705 13 O -0.455 6.455 14 N -0.359 5.359 15 C 0.045 3.955 16 C -0.139 4.139 17 C -0.161 4.161 18 C 0.080 3.920 19 N -0.339 5.339 20 C -0.387 4.387 21 H 0.087 0.913 22 C -0.248 4.248 23 N -0.585 5.585 24 Si 0.794 3.206 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.198 1.198 28 C 0.013 3.987 29 C -0.123 4.123 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.141 0.859 40 H 0.252 0.748 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.130 0.870 44 H 0.034 0.966 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.655 -5.053 29.189 29.741 hybrid contribution 0.361 0.579 -1.438 1.592 sum -2.294 -4.473 27.751 28.202 Atomic orbital electron populations 1.22234 0.91402 1.03455 1.05151 1.22023 0.96521 0.96740 0.83532 0.86661 1.88103 1.86915 1.35489 1.19548 1.21598 1.01183 0.91418 0.83644 1.19804 0.94019 1.00825 0.96271 1.21338 1.00160 0.96685 0.94604 1.21494 0.96403 0.98831 0.98246 1.21553 0.93525 0.99175 0.99721 1.21449 1.00983 0.97816 0.95009 1.21310 0.95307 0.98880 0.98012 1.21063 0.79010 0.85056 0.85346 1.90700 1.42008 1.25628 1.87195 1.45935 1.57346 1.28235 1.04418 1.20218 0.98452 0.95114 0.81734 1.20581 0.97442 0.99025 0.96835 1.22955 0.98745 0.96882 0.97517 1.19408 0.89348 0.92876 0.90413 1.44399 1.09005 1.78452 1.02057 1.19504 1.18983 1.17625 0.82601 0.91261 1.25705 1.01450 0.95912 1.01726 1.70156 1.33224 1.18760 1.36394 0.85296 0.76662 0.78028 0.80591 1.21068 1.22031 1.19814 1.21189 0.89966 0.95199 0.92302 1.20731 0.93678 0.99034 0.98834 0.92661 0.89044 0.89028 0.91318 0.89847 0.84572 0.83782 0.83839 0.84383 0.85867 0.74821 0.92261 0.91547 0.87039 0.96569 0.92603 0.94142 0.95022 0.92302 0.92026 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.48 71.98 0.68 -1.43 16 2 C 0.07 1.32 3.13 29.85 0.09 1.41 16 3 H 0.12 1.40 7.79 -2.39 -0.02 1.38 16 4 O -0.38 -8.76 9.51 -129.99 -1.24 -10.00 16 5 C 0.10 1.55 5.87 71.24 0.42 1.97 16 6 C -0.11 -2.00 5.51 -19.86 -0.11 -2.11 16 7 C -0.11 -1.75 9.70 22.27 0.22 -1.54 16 8 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 9 C -0.12 -1.69 10.05 22.27 0.22 -1.47 16 10 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 11 C -0.12 -2.16 9.70 22.27 0.22 -1.94 16 12 C 0.51 13.22 7.18 87.66 0.63 13.85 16 13 O -0.58 -21.07 16.51 15.97 0.26 -20.80 16 14 N -0.71 -16.01 5.51 -466.77 -2.57 -18.59 16 15 C 0.17 4.63 5.66 85.64 0.48 5.12 16 16 C -0.14 -4.31 5.22 -15.14 -0.08 -4.39 16 17 C -0.14 -5.09 9.47 27.11 0.26 -4.83 16 18 C 0.20 9.63 5.23 85.42 0.45 10.08 16 19 N -0.62 -30.05 3.01 -703.03 -2.11 -32.17 16 20 C -0.26 -13.95 9.71 84.03 0.82 -13.13 16 21 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 22 C -0.05 -2.94 5.01 84.86 0.43 -2.51 16 23 N -0.94 -54.67 11.08 21.65 0.24 -54.43 16 24 Si 0.97 44.67 29.58 68.60 2.03 46.70 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 C 0.14 5.31 6.59 86.32 0.57 5.88 16 29 C -0.08 -2.60 5.95 29.71 0.18 -2.42 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.79 7.87 -2.39 -0.02 0.77 16 32 H 0.09 0.87 7.91 -2.39 -0.02 0.85 16 33 H 0.07 0.93 8.03 -2.39 -0.02 0.91 16 34 H 0.08 0.89 7.81 -2.39 -0.02 0.88 16 35 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.41 7.27 8.24 -92.71 -0.76 6.50 16 41 H 0.06 1.76 7.78 -2.39 -0.02 1.74 16 42 H 0.07 1.89 8.11 -2.39 -0.02 1.88 16 43 H 0.11 3.63 7.73 -2.91 -0.02 3.60 16 44 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.06 3.02 6.41 -2.39 -0.02 3.00 16 46 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 47 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.06 2.21 7.96 -2.39 -0.02 2.19 16 49 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -74.12 412.89 2.68 -71.43 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.16 Total: 18.86 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.91 Total: -1.00 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -4.45 Total: -105.18 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.97 Total: -30.80 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -74.12 2.68 -71.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725828617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.452 kcal (2) G-P(sol) polarization free energy of solvation -74.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds