Wall clock time and date at job start Wed Apr 1 2020 03:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46879 * 2 1 4 4 C 1.52992 * 109.46990 * 120.00196 * 2 1 3 5 5 N 1.46501 * 109.46801 * 176.65122 * 4 2 1 6 6 C 1.34785 * 119.99925 * 185.05462 * 5 4 2 7 7 O 1.21280 * 119.99770 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99969 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47228 * 179.97438 * 8 6 5 10 10 C 1.76193 * 100.00137 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00541 * 0.02562 * 10 9 8 12 12 C 1.38804 * 119.99941 * 179.97438 * 10 9 8 13 13 N 1.31627 * 119.99690 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00019 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47074 * 89.99532 * 14 12 10 16 16 H 1.48498 * 109.47300 * 209.99409 * 14 12 10 17 17 H 1.48505 * 109.47148 * 329.99999 * 14 12 10 18 18 N 1.46902 * 109.46895 * 240.00527 * 2 1 3 19 19 C 1.46896 * 111.00470 * 72.22131 * 18 2 1 20 20 C 1.46906 * 110.99457 * 308.26678 * 18 2 1 21 21 C 1.53007 * 109.46752 * 190.00337 * 20 18 2 22 22 H 1.09002 * 110.54865 * 303.57325 * 21 20 18 23 23 C 1.54993 * 110.61698 * 180.52452 * 21 20 18 24 24 C 1.54816 * 102.09169 * 204.47589 * 23 21 20 25 25 C 1.52998 * 110.48355 * 262.20239 * 24 23 21 26 26 C 1.52991 * 110.59982 * 139.61136 * 24 23 21 27 27 C 1.54098 * 104.18743 * 20.87850 * 24 23 21 28 28 O 1.43748 * 107.29582 * 2.03087 * 27 24 23 29 29 H 1.08997 * 109.46941 * 59.99726 * 1 2 3 30 30 H 1.08992 * 109.47241 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46981 * 299.99934 * 1 2 3 32 32 H 1.08996 * 109.47160 * 296.64852 * 4 2 1 33 33 H 1.08998 * 109.47357 * 56.65122 * 4 2 1 34 34 H 0.97004 * 120.00294 * 5.04889 * 5 4 2 35 35 H 1.09006 * 109.47150 * 299.99803 * 8 6 5 36 36 H 1.09003 * 109.47407 * 60.00091 * 8 6 5 37 37 H 0.97009 * 119.99766 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.47300 * 53.70754 * 19 18 2 39 39 H 1.09000 * 109.47418 * 173.70984 * 19 18 2 40 40 H 1.09010 * 109.47045 * 293.71393 * 19 18 2 41 41 H 1.08998 * 109.46911 * 309.99797 * 20 18 2 42 42 H 1.08999 * 109.47076 * 70.00525 * 20 18 2 43 43 H 1.09000 * 110.90329 * 322.67242 * 23 21 20 44 44 H 1.08999 * 110.90540 * 86.27792 * 23 21 20 45 45 H 1.08998 * 109.47073 * 176.21836 * 25 24 23 46 46 H 1.09001 * 109.47658 * 296.22192 * 25 24 23 47 47 H 1.09008 * 109.47078 * 56.22426 * 25 24 23 48 48 H 1.08996 * 109.47790 * 303.71215 * 26 24 23 49 49 H 1.09005 * 109.47232 * 63.71495 * 26 24 23 50 50 H 1.09004 * 109.46992 * 183.70812 * 26 24 23 51 51 H 1.08996 * 109.88003 * 242.60551 * 27 24 23 52 52 H 1.08996 * 109.87560 * 121.45505 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5028 -0.7915 1.2095 6 6 4.1706 -1.4754 2.1597 7 8 3.5606 -2.0322 3.0478 8 6 5.6753 -1.5472 2.1192 9 16 6.2705 -2.5282 3.5190 10 6 8.0070 -2.4499 3.2313 11 1 8.3896 -1.9034 2.3819 12 6 8.8835 -3.0896 4.0969 13 7 10.1808 -3.0306 3.8822 14 14 8.2219 -4.0341 5.5664 15 1 7.9702 -5.4445 5.1757 16 1 9.2168 -3.9957 6.6682 17 1 6.9528 -3.4131 6.0234 18 7 2.0197 -0.6924 -1.1995 19 6 1.8004 0.1206 -2.4032 20 6 1.3942 -2.0146 -1.3362 21 6 2.1019 -2.8018 -2.4410 22 1 2.0829 -2.2463 -3.3787 23 6 1.4537 -4.1986 -2.6169 24 6 2.6126 -5.0185 -3.2344 25 6 2.4644 -5.0937 -4.7553 26 6 2.6582 -6.4241 -2.6320 27 6 3.8793 -4.2275 -2.8543 28 8 3.4602 -3.1065 -2.0580 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7265 -0.1740 2.1381 33 1 1.6285 -1.7301 1.2797 34 1 3.9907 -0.3459 0.4993 35 1 5.9918 -2.0147 1.1867 36 1 6.0889 -0.5405 2.1796 37 1 10.7934 -3.4773 4.4873 38 1 2.2377 1.1085 -2.2590 39 1 2.2704 -0.3634 -3.2592 40 1 0.7300 0.2201 -2.5844 41 1 1.4786 -2.5556 -0.3937 42 1 0.3418 -1.8940 -1.5930 43 1 1.1543 -4.6124 -1.6540 44 1 0.6048 -4.1503 -3.2990 45 1 3.3224 -5.6158 -5.1787 46 1 1.5510 -5.6335 -5.0052 47 1 2.4141 -4.0850 -5.1658 48 1 2.7443 -6.3523 -1.5478 49 1 1.7441 -6.9595 -2.8892 50 1 3.5185 -6.9623 -3.0300 51 1 4.3805 -3.8750 -3.7557 52 1 4.5526 -4.8611 -2.2771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755293636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:34 Heat of formation + Delta-G solvation = -87.741297 kcal Electronic energy + Delta-G solvation = -29193.114956 eV Core-core repulsion = 25318.644769 eV Total energy + Delta-G solvation = -3874.470187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33722 -39.32862 -38.18452 -34.80733 -34.14963 -32.35320 -31.99696 -30.60585 -29.25298 -27.70187 -27.20756 -26.19548 -25.89453 -25.47951 -24.37095 -21.68285 -20.20575 -20.06984 -19.35994 -17.72991 -16.81340 -16.52585 -16.22765 -16.09786 -15.59663 -15.08303 -14.94226 -14.80339 -14.72359 -14.53887 -13.99073 -13.81010 -13.77538 -13.67189 -13.33998 -13.06922 -12.90467 -12.82853 -12.70699 -12.56114 -12.39532 -12.14965 -11.96118 -11.86831 -11.69212 -11.62386 -11.40251 -11.17996 -11.09492 -10.94317 -10.93713 -10.82410 -10.65565 -10.48071 -9.77571 -9.64982 -9.32268 -8.92223 -8.68730 -8.52634 -8.37885 -6.80014 -6.20638 -3.90476 2.91824 3.21257 3.38309 3.40986 3.53488 3.57610 3.76648 3.88699 4.13750 4.38267 4.41125 4.50964 4.55659 4.67434 4.79467 4.81455 4.88585 4.95908 4.96817 5.00694 5.10756 5.14158 5.18500 5.25096 5.27966 5.32318 5.37695 5.39139 5.42191 5.50377 5.52926 5.54760 5.59698 5.62904 5.68810 5.69998 5.74837 5.82787 5.85818 5.87317 5.94309 5.97496 6.03765 6.21757 6.68362 6.73936 6.86637 6.93798 7.93083 8.02937 8.51199 8.74680 9.26045 10.88783 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009808 B = 0.003058 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.100902 B = 9155.150170 C =11035.050800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.067 3.933 3 H 0.090 0.910 4 C 0.133 3.867 5 N -0.719 5.719 6 C 0.532 3.468 7 O -0.531 6.531 8 C -0.120 4.120 9 S -0.145 6.145 10 C -0.518 4.518 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.883 5.883 14 Si 0.857 3.143 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.235 1.235 18 N -0.524 5.524 19 C 0.021 3.979 20 C 0.057 3.943 21 C 0.083 3.917 22 H 0.066 0.934 23 C -0.143 4.143 24 C -0.100 4.100 25 C -0.137 4.137 26 C -0.139 4.139 27 C 0.051 3.949 28 O -0.348 6.348 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.405 0.595 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.269 0.731 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.062 0.938 49 H 0.056 0.944 50 H 0.058 0.942 51 H 0.056 0.944 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.551 2.664 -19.370 29.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.042 4.042 3 H 0.108 0.892 4 C 0.008 3.992 5 N -0.372 5.372 6 C 0.318 3.682 7 O -0.406 6.406 8 C -0.271 4.271 9 S 0.081 5.919 10 C -0.665 4.665 11 H 0.106 0.894 12 C -0.114 4.114 13 N -0.520 5.520 14 Si 0.682 3.318 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.159 1.159 18 N -0.247 5.247 19 C -0.127 4.127 20 C -0.070 4.070 21 C 0.025 3.975 22 H 0.083 0.917 23 C -0.181 4.181 24 C -0.100 4.100 25 C -0.195 4.195 26 C -0.196 4.196 27 C -0.026 4.026 28 O -0.267 6.267 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.240 0.760 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.078 0.922 51 H 0.074 0.926 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.743 1.740 -17.623 28.824 hybrid contribution -0.014 0.367 -1.153 1.210 sum -22.757 2.107 -18.776 29.578 Atomic orbital electron populations 1.22391 0.96532 1.02691 1.02704 1.22026 0.93327 0.98556 0.90253 0.89159 1.21257 0.81477 1.00564 0.95879 1.45688 1.06333 1.55429 1.29785 1.20195 0.89418 0.77587 0.81029 1.90673 1.69677 1.44865 1.35430 1.23242 0.93713 1.05112 1.05029 1.84715 1.06467 1.68092 1.32597 1.22348 0.88536 1.39251 1.16403 0.89434 1.24711 0.94107 0.95125 0.97424 1.69949 1.01499 1.42727 1.37805 0.86733 0.80887 0.81579 0.82641 1.19281 1.20074 1.15903 1.62078 1.57836 1.02521 1.02272 1.22454 0.99036 0.98139 0.93081 1.22244 0.94995 0.89993 0.99796 1.23087 0.83270 0.94384 0.96750 0.91668 1.23282 0.97773 0.95190 1.01833 1.21929 0.95362 0.96602 0.96109 1.21867 1.02011 1.01791 0.93793 1.21854 1.01889 0.94580 1.01256 1.23337 0.95698 0.87995 0.95577 1.89070 1.27679 1.48596 1.61332 0.92151 0.91942 0.91463 0.91618 0.91696 0.75993 0.88446 0.88773 0.92065 0.91264 0.91219 0.95655 0.89432 0.93281 0.90175 0.90499 0.92200 0.92389 0.92598 0.91874 0.92513 0.92243 0.92587 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.42 37.16 0.31 -0.94 16 2 C 0.07 0.57 2.42 -67.71 -0.16 0.41 16 3 H 0.09 0.71 7.94 -51.93 -0.41 0.30 16 4 C 0.13 1.58 4.95 -4.05 -0.02 1.56 16 5 N -0.72 -10.26 5.37 -60.30 -0.32 -10.58 16 6 C 0.53 10.20 7.85 -10.98 -0.09 10.12 16 7 O -0.53 -12.08 15.86 5.56 0.09 -11.99 16 8 C -0.12 -2.51 6.16 36.00 0.22 -2.29 16 9 S -0.15 -3.84 18.55 -107.50 -1.99 -5.83 16 10 C -0.52 -15.41 10.04 30.94 0.31 -15.10 16 11 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 12 C 0.09 2.84 5.50 -17.43 -0.10 2.74 16 13 N -0.88 -27.26 13.97 55.49 0.78 -26.48 16 14 Si 0.86 22.37 27.74 -169.99 -4.71 17.65 16 15 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.24 -6.14 6.74 56.52 0.38 -5.76 16 18 N -0.52 -4.70 4.28 -234.88 -1.00 -5.70 16 19 C 0.02 0.15 9.00 60.06 0.54 0.69 16 20 C 0.06 0.52 3.58 -3.82 -0.01 0.50 16 21 C 0.08 0.78 3.22 -25.68 -0.08 0.69 16 22 H 0.07 0.56 6.52 -51.93 -0.34 0.22 16 23 C -0.14 -1.14 5.70 -24.72 -0.14 -1.28 16 24 C -0.10 -0.82 0.99 -152.98 -0.15 -0.97 16 25 C -0.14 -0.91 8.25 37.16 0.31 -0.60 16 26 C -0.14 -1.13 8.27 37.15 0.31 -0.82 16 27 C 0.05 0.54 7.04 37.73 0.27 0.80 16 28 O -0.35 -4.45 11.21 -35.23 -0.39 -4.85 16 29 H 0.06 0.36 6.91 -51.93 -0.36 0.00 16 30 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 34 H 0.41 5.15 8.29 -40.82 -0.34 4.81 16 35 H 0.10 1.97 8.14 -51.91 -0.42 1.55 16 36 H 0.09 1.84 8.14 -51.91 -0.42 1.41 16 37 H 0.27 7.72 8.31 -40.82 -0.34 7.39 16 38 H 0.07 0.46 7.98 -51.93 -0.41 0.04 16 39 H 0.07 0.51 6.53 -51.93 -0.34 0.17 16 40 H 0.02 0.15 6.95 -51.92 -0.36 -0.21 16 41 H 0.09 0.97 6.26 -51.93 -0.32 0.65 16 42 H 0.05 0.36 6.81 -51.93 -0.35 0.01 16 43 H 0.08 0.70 7.79 -51.93 -0.40 0.29 16 44 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 48 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.06 0.54 7.69 -51.93 -0.40 0.14 16 52 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 LS Contribution 415.39 15.07 6.26 6.26 Total: -1.00 -34.92 415.39 -9.14 -44.06 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -9.34 Total: 1.95 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 1.51 Total: -4.49 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.55 Total: -42.76 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.31 Total: -16.84 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.65 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.99 Total: -5.83 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.92 -9.14 -44.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755293636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.685 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds