Wall clock time and date at job start Wed Apr 1 2020 02:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46996 * 2 1 4 4 C 1.36873 * 119.99924 * 264.73965 * 3 2 1 5 5 H 1.07999 * 119.99368 * 130.83042 * 4 3 2 6 6 C 1.39042 * 120.00177 * 310.82677 * 4 3 2 7 7 N 1.31365 * 119.99754 * 170.02803 * 6 4 3 8 8 Si 1.86798 * 120.00197 * 350.03504 * 6 4 3 9 9 H 1.48498 * 109.47315 * 95.26986 * 8 6 4 10 10 H 1.48499 * 109.47263 * 215.26969 * 8 6 4 11 11 H 1.48503 * 109.46943 * 335.27150 * 8 6 4 12 12 C 1.34775 * 119.99860 * 84.74334 * 3 2 1 13 13 O 1.21595 * 120.00164 * 2.09600 * 12 3 2 14 14 C 1.47732 * 119.99982 * 182.09902 * 12 3 2 15 15 C 1.39639 * 120.14872 * 137.93557 * 14 12 3 16 16 C 1.37938 * 119.84598 * 180.02562 * 15 14 12 17 17 C 1.38374 * 120.15043 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.84629 * 179.97438 * 17 16 15 19 19 N 1.46498 * 109.47057 * 90.00636 * 18 17 16 20 20 C 1.34778 * 120.00107 * 179.97438 * 19 18 17 21 21 O 1.21277 * 119.99901 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.00124 * 179.97438 * 20 19 18 23 23 C 1.54890 * 110.48457 * 63.24169 * 22 20 19 24 24 C 1.55239 * 102.58539 * 156.67984 * 23 22 20 25 25 C 1.54268 * 104.22857 * 322.08183 * 24 23 22 26 26 C 1.53872 * 106.60114 * 23.61390 * 25 24 23 27 27 C 1.38375 * 120.30326 * 0.25863 * 17 16 15 28 28 C 1.37937 * 120.15347 * 359.48570 * 27 17 16 29 29 H 1.08998 * 109.47223 * 299.99245 * 1 2 3 30 30 H 1.08998 * 109.47419 * 59.99936 * 1 2 3 31 31 H 1.09006 * 109.47061 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47045 * 240.00423 * 2 1 3 33 33 H 1.08998 * 109.47419 * 120.00063 * 2 1 3 34 34 H 0.97000 * 119.99896 * 179.97438 * 7 6 4 35 35 H 1.08002 * 120.08360 * 0.02562 * 15 14 12 36 36 H 1.08007 * 119.92428 * 179.97438 * 16 15 14 37 37 H 1.08997 * 109.47669 * 330.00297 * 18 17 16 38 38 H 1.09002 * 109.47318 * 210.00015 * 18 17 16 39 39 H 0.97005 * 120.00267 * 359.97438 * 19 18 17 40 40 H 1.08999 * 110.43291 * 300.70203 * 22 20 19 41 41 H 1.09000 * 110.75449 * 275.06380 * 23 22 20 42 42 H 1.08997 * 110.75905 * 38.43644 * 23 22 20 43 43 H 1.09002 * 110.46205 * 203.39706 * 24 23 22 44 44 H 1.08994 * 110.58477 * 80.83276 * 24 23 22 45 45 H 1.08998 * 110.03317 * 264.32771 * 25 24 23 46 46 H 1.09006 * 110.07122 * 142.92158 * 25 24 23 47 47 H 1.09000 * 110.02956 * 240.71223 * 26 25 24 48 48 H 1.08996 * 110.03083 * 119.28290 * 26 25 24 49 49 H 1.07999 * 119.92357 * 179.74325 * 27 17 16 50 50 H 1.07995 * 120.07718 * 180.25855 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9902 -1.1804 5 1 1.9649 2.9740 -1.4064 6 6 3.1790 1.3424 -2.0884 7 7 3.3398 1.8322 -3.2966 8 14 4.0653 -0.2247 -1.5902 9 1 3.2717 -1.4020 -2.0253 10 1 5.4024 -0.2634 -2.2350 11 1 4.2264 -0.2544 -0.1142 12 6 2.1421 2.0522 1.1623 13 8 1.8848 1.4989 2.2141 14 6 2.5902 3.4599 1.1585 15 6 1.9722 4.3949 1.9913 16 6 2.3952 5.7078 1.9823 17 6 3.4299 6.0989 1.1509 18 6 3.8862 7.5351 1.1462 19 7 4.9447 7.7145 2.1430 20 6 5.5087 8.9262 2.3165 21 8 5.1402 9.8680 1.6471 22 6 6.5971 9.1109 3.3424 23 6 7.8373 8.2583 2.9763 24 6 8.9860 8.9984 3.7128 25 6 8.6335 10.4925 3.5604 26 6 7.1146 10.5640 3.3249 27 6 4.0435 5.1785 0.3195 28 6 3.6340 3.8614 0.3222 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.9192 1.3805 -3.9299 35 1 1.1648 4.0910 2.6411 36 1 1.9178 6.4322 2.6257 37 1 3.0450 8.1845 1.3885 38 1 4.2701 7.7912 0.1586 39 1 5.2396 6.9611 2.6782 40 1 6.2328 8.8475 4.3354 41 1 7.7294 7.2396 3.3488 42 1 8.0038 8.2611 1.8991 43 1 9.9438 8.7822 3.2394 44 1 9.0099 8.7175 4.7657 45 1 9.1639 10.9162 2.7076 46 1 8.8963 11.0335 4.4695 47 1 6.9079 11.0224 2.3578 48 1 6.6401 11.1389 4.1201 49 1 4.8477 5.4914 -0.3299 50 1 4.1166 3.1432 -0.3241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068674166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:41 Heat of formation + Delta-G solvation = -59.044581 kcal Electronic energy + Delta-G solvation = -29681.276427 eV Core-core repulsion = 25672.606672 eV Total energy + Delta-G solvation = -4008.669756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.27179 -39.57342 -38.13401 -37.25517 -35.22703 -34.82651 -32.33499 -31.61519 -30.62699 -30.00987 -29.28284 -28.90776 -26.27623 -24.89928 -23.23827 -22.24710 -22.05408 -21.25147 -20.73792 -19.80818 -19.29906 -17.74009 -17.60924 -16.35170 -16.20587 -15.83518 -15.67380 -15.26467 -15.09908 -14.70889 -14.54127 -14.23993 -13.96913 -13.66930 -13.62564 -13.47939 -13.06784 -13.00132 -12.70687 -12.52340 -12.40992 -12.17152 -12.04223 -11.82476 -11.57705 -11.50424 -11.44924 -11.39328 -11.15804 -11.08464 -11.07085 -10.78516 -10.69751 -10.57466 -10.15617 -10.01504 -9.89328 -9.36284 -9.13540 -8.80098 -8.49750 -8.31412 -7.80096 -6.55442 -4.30419 1.37077 1.87133 2.55421 2.97544 3.11291 3.16845 3.20363 3.62837 4.01634 4.17387 4.19755 4.29132 4.42975 4.49745 4.77161 4.84443 4.95640 5.05718 5.14227 5.17051 5.21278 5.27712 5.36075 5.36444 5.53485 5.55263 5.63376 5.64714 5.71450 5.77762 5.80495 5.87501 5.90601 5.98104 6.00884 6.05954 6.08870 6.10072 6.30302 6.34988 6.35771 6.49227 6.55858 6.76099 6.80385 6.92251 7.06936 7.31103 7.39212 7.44075 7.97005 8.14034 8.15839 8.82062 9.17250 9.53521 10.52841 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.002352 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.698141 B =11899.987376 C =12463.360347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 N -0.459 5.459 4 C -0.343 4.343 5 H 0.104 0.896 6 C 0.069 3.931 7 N -0.861 5.861 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.259 1.259 12 C 0.523 3.477 13 O -0.591 6.591 14 C -0.083 4.083 15 C -0.085 4.085 16 C -0.119 4.119 17 C -0.110 4.110 18 C 0.164 3.836 19 N -0.722 5.722 20 C 0.518 3.482 21 O -0.544 6.544 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.112 4.112 27 C -0.116 4.116 28 C -0.051 4.051 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.277 0.723 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.403 0.597 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.066 0.934 49 H 0.121 0.879 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.566 10.807 10.803 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.025 4.025 3 N -0.179 5.179 4 C -0.471 4.471 5 H 0.121 0.879 6 C -0.139 4.139 7 N -0.495 5.495 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.183 1.183 12 C 0.313 3.687 13 O -0.476 6.476 14 C -0.086 4.086 15 C -0.104 4.104 16 C -0.138 4.138 17 C -0.111 4.111 18 C 0.041 3.959 19 N -0.373 5.373 20 C 0.304 3.696 21 O -0.421 6.421 22 C -0.136 4.136 23 C -0.153 4.153 24 C -0.161 4.161 25 C -0.163 4.163 26 C -0.150 4.150 27 C -0.134 4.134 28 C -0.070 4.070 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.237 0.763 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.139 0.861 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.238 11.175 10.583 17.008 hybrid contribution 0.437 -1.287 0.050 1.360 sum 7.675 9.888 10.633 16.424 Atomic orbital electron populations 1.22003 0.96373 1.00833 1.02276 1.21593 0.94531 0.85390 1.00954 1.43616 1.56787 1.11521 1.05949 1.19049 1.29667 1.04727 0.93625 0.87887 1.25479 0.95573 0.97928 0.94935 1.69651 1.35937 1.39983 1.03977 0.86891 0.79469 0.83277 0.80246 1.19852 1.21189 1.18290 1.18458 0.79957 0.86659 0.83637 1.90644 1.55294 1.70080 1.31540 1.19983 0.97406 0.94073 0.97104 1.21107 0.99300 0.92290 0.97703 1.20792 0.97585 0.95769 0.99611 1.19814 0.98032 0.94397 0.98814 1.20188 0.90199 0.92937 0.92569 1.46158 1.39160 1.11357 1.40667 1.20579 0.82619 0.82439 0.83951 1.90683 1.63268 1.40294 1.47859 1.22186 0.94422 0.98391 0.98614 1.22567 0.93057 0.98443 1.01249 1.22407 0.98223 0.94949 1.00524 1.22154 0.95865 0.96589 1.01687 1.22065 0.94819 0.94416 1.03672 1.21010 1.00235 0.93202 0.99002 1.21758 0.94787 0.95960 0.94469 0.92702 0.92086 0.92914 0.91543 0.91589 0.91296 0.85897 0.86318 0.90858 0.90656 0.76290 0.88192 0.90663 0.90801 0.91371 0.91363 0.91693 0.91770 0.89806 0.91565 0.86074 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.20 37.16 0.38 -2.53 16 2 C 0.10 2.09 4.52 -4.04 -0.02 2.07 16 3 N -0.46 -10.65 2.02 -115.93 -0.23 -10.88 16 4 C -0.34 -8.40 6.61 -15.00 -0.10 -8.50 16 5 H 0.10 2.73 7.46 -52.49 -0.39 2.34 16 6 C 0.07 1.71 5.18 -17.45 -0.09 1.62 16 7 N -0.86 -22.46 13.95 55.50 0.77 -21.69 16 8 Si 0.87 19.44 24.87 -169.99 -4.23 15.22 16 9 H -0.27 -5.89 6.91 56.52 0.39 -5.50 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.26 -5.88 7.01 56.52 0.40 -5.48 16 12 C 0.52 12.04 7.25 -12.38 -0.09 11.95 16 13 O -0.59 -14.58 16.60 5.28 0.09 -14.49 16 14 C -0.08 -1.66 5.28 -104.97 -0.55 -2.21 16 15 C -0.08 -1.46 9.66 -39.17 -0.38 -1.84 16 16 C -0.12 -1.71 9.68 -39.64 -0.38 -2.09 16 17 C -0.11 -1.54 5.26 -104.52 -0.55 -2.08 16 18 C 0.16 2.03 5.79 -5.20 -0.03 2.00 16 19 N -0.72 -7.82 5.51 -61.47 -0.34 -8.16 16 20 C 0.52 6.08 7.14 -10.98 -0.08 6.00 16 21 O -0.54 -8.44 15.44 5.56 0.09 -8.36 16 22 C -0.11 -0.99 3.24 -90.11 -0.29 -1.28 16 23 C -0.12 -0.87 6.32 -24.55 -0.16 -1.02 16 24 C -0.12 -0.81 6.84 -24.88 -0.17 -0.98 16 25 C -0.13 -0.88 6.80 -25.61 -0.17 -1.06 16 26 C -0.11 -0.98 6.17 -25.62 -0.16 -1.14 16 27 C -0.12 -1.83 9.68 -39.64 -0.38 -2.21 16 28 C -0.05 -0.98 8.10 -39.17 -0.32 -1.29 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.42 4.26 -51.93 -0.22 1.20 16 33 H 0.07 1.40 7.55 -51.93 -0.39 1.01 16 34 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 36 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 37 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 39 H 0.40 3.70 8.46 -40.82 -0.35 3.35 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.63 8.05 -51.93 -0.42 0.22 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.91 6.88 -51.93 -0.36 0.56 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 50 H 0.15 3.11 6.26 -52.49 -0.33 2.78 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -29.46 402.14 -9.28 -38.74 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.94 Total: 8.16 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.54 Total: -4.60 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.20 Total: -40.72 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.17 Total: -22.85 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.23 Total: 15.22 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.46 -9.28 -38.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068674166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.304 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds