Wall clock time and date at job start Wed Apr 1 2020 02:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46996 * 2 1 4 4 C 1.36873 * 119.99924 * 264.73965 * 3 2 1 5 5 H 1.07999 * 119.99368 * 130.83042 * 4 3 2 6 6 C 1.39042 * 120.00177 * 310.82677 * 4 3 2 7 7 N 1.31365 * 119.99754 * 170.02803 * 6 4 3 8 8 Si 1.86798 * 120.00197 * 350.03504 * 6 4 3 9 9 H 1.48498 * 109.47315 * 95.26986 * 8 6 4 10 10 H 1.48499 * 109.47263 * 215.26969 * 8 6 4 11 11 H 1.48503 * 109.46943 * 335.27150 * 8 6 4 12 12 C 1.34775 * 119.99860 * 84.74334 * 3 2 1 13 13 O 1.21595 * 120.00164 * 2.09600 * 12 3 2 14 14 C 1.47732 * 119.99982 * 182.09902 * 12 3 2 15 15 C 1.39639 * 120.14872 * 137.93557 * 14 12 3 16 16 C 1.37938 * 119.84598 * 180.02562 * 15 14 12 17 17 C 1.38374 * 120.15043 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.84629 * 179.97438 * 17 16 15 19 19 N 1.46498 * 109.47057 * 90.00636 * 18 17 16 20 20 C 1.34778 * 120.00107 * 179.97438 * 19 18 17 21 21 O 1.21277 * 119.99901 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.00124 * 179.97438 * 20 19 18 23 23 C 1.54890 * 110.48457 * 63.24169 * 22 20 19 24 24 C 1.55239 * 102.58539 * 156.67984 * 23 22 20 25 25 C 1.54268 * 104.22857 * 322.08183 * 24 23 22 26 26 C 1.53872 * 106.60114 * 23.61390 * 25 24 23 27 27 C 1.38375 * 120.30326 * 0.25863 * 17 16 15 28 28 C 1.37937 * 120.15347 * 359.48570 * 27 17 16 29 29 H 1.08998 * 109.47223 * 299.99245 * 1 2 3 30 30 H 1.08998 * 109.47419 * 59.99936 * 1 2 3 31 31 H 1.09006 * 109.47061 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47045 * 240.00423 * 2 1 3 33 33 H 1.08998 * 109.47419 * 120.00063 * 2 1 3 34 34 H 0.97000 * 119.99896 * 179.97438 * 7 6 4 35 35 H 1.08002 * 120.08360 * 0.02562 * 15 14 12 36 36 H 1.08007 * 119.92428 * 179.97438 * 16 15 14 37 37 H 1.08997 * 109.47669 * 330.00297 * 18 17 16 38 38 H 1.09002 * 109.47318 * 210.00015 * 18 17 16 39 39 H 0.97005 * 120.00267 * 359.97438 * 19 18 17 40 40 H 1.08999 * 110.43291 * 300.70203 * 22 20 19 41 41 H 1.09000 * 110.75449 * 275.06380 * 23 22 20 42 42 H 1.08997 * 110.75905 * 38.43644 * 23 22 20 43 43 H 1.09002 * 110.46205 * 203.39706 * 24 23 22 44 44 H 1.08994 * 110.58477 * 80.83276 * 24 23 22 45 45 H 1.08998 * 110.03317 * 264.32771 * 25 24 23 46 46 H 1.09006 * 110.07122 * 142.92158 * 25 24 23 47 47 H 1.09000 * 110.02956 * 240.71223 * 26 25 24 48 48 H 1.08996 * 110.03083 * 119.28290 * 26 25 24 49 49 H 1.07999 * 119.92357 * 179.74325 * 27 17 16 50 50 H 1.07995 * 120.07718 * 180.25855 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9902 -1.1804 5 1 1.9649 2.9740 -1.4064 6 6 3.1790 1.3424 -2.0884 7 7 3.3398 1.8322 -3.2966 8 14 4.0653 -0.2247 -1.5902 9 1 3.2717 -1.4020 -2.0253 10 1 5.4024 -0.2634 -2.2350 11 1 4.2264 -0.2544 -0.1142 12 6 2.1421 2.0522 1.1623 13 8 1.8848 1.4989 2.2141 14 6 2.5902 3.4599 1.1585 15 6 1.9722 4.3949 1.9913 16 6 2.3952 5.7078 1.9823 17 6 3.4299 6.0989 1.1509 18 6 3.8862 7.5351 1.1462 19 7 4.9447 7.7145 2.1430 20 6 5.5087 8.9262 2.3165 21 8 5.1402 9.8680 1.6471 22 6 6.5971 9.1109 3.3424 23 6 7.8373 8.2583 2.9763 24 6 8.9860 8.9984 3.7128 25 6 8.6335 10.4925 3.5604 26 6 7.1146 10.5640 3.3249 27 6 4.0435 5.1785 0.3195 28 6 3.6340 3.8614 0.3222 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.9192 1.3805 -3.9299 35 1 1.1648 4.0910 2.6411 36 1 1.9178 6.4322 2.6257 37 1 3.0450 8.1845 1.3885 38 1 4.2701 7.7912 0.1586 39 1 5.2396 6.9611 2.6782 40 1 6.2328 8.8475 4.3354 41 1 7.7294 7.2396 3.3488 42 1 8.0038 8.2611 1.8991 43 1 9.9438 8.7822 3.2394 44 1 9.0099 8.7175 4.7657 45 1 9.1639 10.9162 2.7076 46 1 8.8963 11.0335 4.4695 47 1 6.9079 11.0224 2.3578 48 1 6.6401 11.1389 4.1201 49 1 4.8477 5.4914 -0.3299 50 1 4.1166 3.1432 -0.3241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068674166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:41 Heat of formation + Delta-G solvation = -75.245099 kcal Electronic energy + Delta-G solvation = -29681.978935 eV Core-core repulsion = 25672.606672 eV Total energy + Delta-G solvation = -4009.372263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.35961 -41.00640 -39.53868 -38.02961 -37.04677 -35.94502 -34.19987 -32.96741 -31.97085 -31.41007 -30.17589 -29.52276 -27.54620 -26.69373 -24.73536 -23.49848 -23.16158 -22.49055 -21.34218 -21.05787 -20.57889 -19.38525 -18.51193 -18.01639 -17.37267 -17.24171 -16.65408 -16.50206 -16.33873 -16.10465 -15.88022 -15.45173 -15.27239 -15.20896 -14.65636 -14.49192 -14.36861 -14.29214 -14.24924 -14.01487 -13.82168 -13.50114 -13.32906 -13.12741 -12.85785 -12.79544 -12.60817 -12.48289 -12.14599 -12.03925 -11.97695 -11.96548 -11.93232 -11.72670 -11.67592 -11.28238 -11.20416 -10.87490 -10.60229 -10.11718 -9.85939 -9.69258 -9.63929 -8.48836 -6.25530 -0.00214 0.53675 1.19036 1.30457 1.40416 1.64120 1.83654 2.16087 2.30213 2.57427 2.82763 3.07176 3.54467 3.63104 3.67702 3.85828 3.92691 3.97571 4.12709 4.17091 4.26337 4.33689 4.39390 4.47323 4.50086 4.53194 4.55222 4.60130 4.64205 4.72325 4.78594 4.80671 4.81089 4.94823 4.98338 4.99327 5.11860 5.17411 5.23103 5.23604 5.29527 5.34172 5.41870 5.45676 5.50101 5.50542 5.59340 5.65708 6.01584 6.07848 6.20218 6.55443 6.91587 7.24203 7.30405 7.68882 8.62893 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.002352 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.698141 B =11899.987376 C =12463.360347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 N -0.469 5.469 4 C -0.329 4.329 5 H 0.076 0.924 6 C 0.038 3.962 7 N -0.896 5.896 8 Si 0.922 3.078 9 H -0.258 1.258 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.518 3.482 13 O -0.613 6.613 14 C -0.116 4.116 15 C -0.087 4.087 16 C -0.103 4.103 17 C -0.088 4.088 18 C 0.169 3.831 19 N -0.713 5.713 20 C 0.517 3.483 21 O -0.585 6.585 22 C -0.110 4.110 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.114 4.114 27 C -0.113 4.113 28 C -0.066 4.066 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.280 0.720 35 H 0.127 0.873 36 H 0.154 0.846 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.413 0.587 40 H 0.124 0.876 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.135 0.865 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 11.259 12.630 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 N -0.189 5.189 4 C -0.457 4.457 5 H 0.093 0.907 6 C -0.167 4.167 7 N -0.533 5.533 8 Si 0.747 3.253 9 H -0.183 1.183 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.309 3.691 13 O -0.499 6.499 14 C -0.118 4.118 15 C -0.106 4.106 16 C -0.122 4.122 17 C -0.089 4.089 18 C 0.046 3.954 19 N -0.365 5.365 20 C 0.305 3.695 21 O -0.466 6.466 22 C -0.131 4.131 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.161 4.161 26 C -0.152 4.152 27 C -0.131 4.131 28 C -0.085 4.085 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.145 0.855 36 H 0.172 0.828 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.250 0.750 40 H 0.141 0.859 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.091 0.909 49 H 0.153 0.847 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.826 11.598 12.417 18.707 hybrid contribution 0.239 -1.303 -0.470 1.406 sum 8.065 10.295 11.947 17.713 Atomic orbital electron populations 1.21924 0.94232 1.02882 1.01475 1.21749 0.96432 0.84383 1.00778 1.43744 1.57226 1.12295 1.05630 1.18703 1.29340 1.03797 0.93863 0.90679 1.25892 0.95915 1.00167 0.94724 1.69713 1.37157 1.41498 1.04905 0.86150 0.78881 0.81118 0.79147 1.18291 1.20811 1.19359 1.18963 0.79129 0.87852 0.83148 1.90604 1.56331 1.70959 1.32053 1.19939 0.99126 0.93250 0.99529 1.21227 0.99280 0.92987 0.97090 1.21098 0.96821 0.95046 0.99189 1.19928 0.96938 0.94759 0.97232 1.20069 0.90913 0.91460 0.92938 1.46043 1.38550 1.11675 1.40202 1.21130 0.82695 0.81811 0.83872 1.90672 1.64662 1.41635 1.49582 1.22245 0.93698 0.98558 0.98571 1.22585 0.92870 0.99203 1.00582 1.22415 0.97931 0.94140 1.01265 1.22151 0.94441 0.97352 1.02170 1.22064 0.96242 0.94499 1.02390 1.21123 1.00567 0.92087 0.99338 1.21512 0.95294 0.96906 0.94745 0.93447 0.92812 0.89466 0.91649 0.91678 0.90950 0.85504 0.82806 0.90161 0.91211 0.75021 0.85862 0.89205 0.92299 0.90900 0.89948 0.92155 0.90425 0.92528 0.90939 0.84682 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 10.20 71.98 0.73 -4.60 16 2 C 0.09 3.77 4.52 86.38 0.39 4.16 16 3 N -0.47 -22.17 2.02 -638.94 -1.29 -23.46 16 4 C -0.33 -16.58 6.61 84.10 0.56 -16.02 16 5 H 0.08 4.17 7.46 -2.91 -0.02 4.15 16 6 C 0.04 1.91 5.18 84.96 0.44 2.35 16 7 N -0.90 -47.66 13.95 21.68 0.30 -47.36 16 8 Si 0.92 40.25 24.87 68.60 1.71 41.96 16 9 H -0.26 -10.58 6.91 99.48 0.69 -9.89 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.27 -12.10 7.01 99.48 0.70 -11.40 16 12 C 0.52 24.29 7.25 86.75 0.63 24.92 16 13 O -0.61 -30.58 16.60 -4.02 -0.07 -30.65 16 14 C -0.12 -4.70 5.28 -20.09 -0.11 -4.80 16 15 C -0.09 -2.90 9.66 22.54 0.22 -2.68 16 16 C -0.10 -2.69 9.68 22.23 0.22 -2.48 16 17 C -0.09 -2.27 5.26 -19.80 -0.10 -2.38 16 18 C 0.17 3.82 5.79 85.63 0.50 4.31 16 19 N -0.71 -13.76 5.51 -466.79 -2.57 -16.33 16 20 C 0.52 11.30 7.14 87.66 0.63 11.93 16 21 O -0.59 -17.83 15.44 -3.02 -0.05 -17.88 16 22 C -0.11 -1.65 3.24 -10.46 -0.03 -1.69 16 23 C -0.11 -1.47 6.32 32.01 0.20 -1.26 16 24 C -0.12 -1.26 6.84 31.79 0.22 -1.05 16 25 C -0.12 -1.51 6.80 31.32 0.21 -1.30 16 26 C -0.11 -1.85 6.17 31.32 0.19 -1.65 16 27 C -0.11 -3.48 9.68 22.23 0.22 -3.26 16 28 C -0.07 -2.55 8.10 22.54 0.18 -2.37 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 32 H 0.07 2.76 4.26 -2.38 -0.01 2.75 16 33 H 0.06 2.75 7.55 -2.39 -0.02 2.73 16 34 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 35 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 36 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 38 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 39 H 0.41 6.37 8.46 -92.70 -0.78 5.58 16 40 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.94 8.05 -2.39 -0.02 0.92 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.06 1.24 6.88 -2.39 -0.02 1.22 16 48 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 50 H 0.12 5.30 6.26 -2.91 -0.02 5.28 16 Total: -1.00 -65.36 402.14 3.44 -61.91 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.13 Total: 29.67 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 5.28 Total: 2.13 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -3.56 Total: -87.15 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.11 Total: -48.52 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.71 Total: 41.96 kcal Total: -65.36 3.44 -61.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068674166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.334 kcal (2) G-P(sol) polarization free energy of solvation -65.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds