Wall clock time and date at job start Wed Apr 1 2020 03:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46843 * 110.99852 * 2 1 4 4 C 1.53044 * 109.52431 * 185.84225 * 3 2 1 5 5 C 1.53116 * 109.27612 * 300.82015 * 4 3 2 6 6 C 1.53118 * 109.16198 * 57.65182 * 5 4 3 7 7 H 1.09006 * 109.49949 * 62.32884 * 6 5 4 8 8 C 1.52999 * 109.50478 * 182.40062 * 6 5 4 9 9 N 1.46495 * 109.47327 * 185.00207 * 8 6 5 10 10 C 1.34779 * 120.00066 * 180.02562 * 9 8 6 11 11 O 1.21717 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.46255 * 120.00194 * 179.97438 * 10 9 8 13 13 C 1.35020 * 120.00290 * 179.97438 * 12 10 9 14 14 C 1.46955 * 119.99917 * 180.02562 * 13 12 10 15 15 C 1.40028 * 120.10018 * 180.02562 * 14 13 12 16 16 C 1.37598 * 119.89920 * 180.02562 * 15 14 13 17 17 C 1.39170 * 120.10132 * 0.02562 * 16 15 14 18 18 O 1.35574 * 119.89826 * 179.97438 * 17 16 15 19 19 C 1.34784 * 117.00043 * 354.45047 * 18 17 16 20 20 H 1.07998 * 119.99430 * 5.05022 * 19 18 17 21 21 C 1.38711 * 119.99929 * 185.05942 * 19 18 17 22 22 N 1.31509 * 120.00340 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99952 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47211 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47262 * 119.99798 * 23 21 19 26 26 H 1.48500 * 109.47339 * 239.99404 * 23 21 19 27 27 C 1.39177 * 120.20441 * 0.25482 * 17 16 15 28 28 C 1.37606 * 120.10039 * 359.44578 * 27 17 16 29 29 C 1.46849 * 111.00289 * 124.20900 * 2 1 3 30 30 H 1.08998 * 109.47555 * 63.95791 * 1 2 3 31 31 H 1.09005 * 109.46811 * 183.95926 * 1 2 3 32 32 H 1.09001 * 109.47025 * 303.95165 * 1 2 3 33 33 H 1.08998 * 109.46672 * 65.82400 * 3 2 1 34 34 H 1.09001 * 109.46110 * 305.85659 * 3 2 1 35 35 H 1.09000 * 109.50174 * 180.87615 * 4 3 2 36 36 H 1.09005 * 109.53169 * 60.77964 * 4 3 2 37 37 H 1.08998 * 109.52083 * 297.74672 * 5 4 3 38 38 H 1.08996 * 109.57646 * 177.59051 * 5 4 3 39 39 H 1.09004 * 109.47066 * 65.00199 * 8 6 5 40 40 H 1.08997 * 109.47108 * 305.00883 * 8 6 5 41 41 H 0.96995 * 120.00025 * 0.02562 * 9 8 6 42 42 H 1.08004 * 119.99653 * 0.02562 * 12 10 9 43 43 H 1.07995 * 119.99785 * 0.02562 * 13 12 10 44 44 H 1.08001 * 120.04682 * 0.03930 * 15 14 13 45 45 H 1.08002 * 119.94958 * 180.02562 * 16 15 14 46 46 H 0.97002 * 120.00766 * 179.97438 * 22 21 19 47 47 H 1.08000 * 119.95409 * 179.70286 * 27 17 16 48 48 H 1.07998 * 120.04879 * 180.27555 * 28 27 17 49 49 H 1.08995 * 109.46150 * 54.14690 * 29 2 1 50 50 H 1.09000 * 109.46117 * 294.17883 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0143 6 6 3.5181 -0.8714 1.0208 7 1 3.7820 -1.3838 0.0956 8 6 4.0681 -1.6558 2.2137 9 7 3.5872 -3.0382 2.1528 10 6 3.9461 -3.9193 3.1075 11 8 4.6694 -3.5662 4.0206 12 6 3.4656 -5.2993 3.0470 13 6 3.8255 -6.1821 4.0031 14 6 3.3431 -7.5688 3.9420 15 6 3.7146 -8.4860 4.9327 16 6 3.2610 -9.7836 4.8711 17 6 2.4345 -10.1851 3.8258 18 8 1.9903 -11.4647 3.7689 19 6 2.4768 -12.3228 4.6874 20 1 3.1237 -11.9625 5.4736 21 6 2.1466 -13.6685 4.6228 22 7 1.3586 -14.1071 3.6657 23 14 2.8214 -14.8578 5.8954 24 1 3.6775 -14.1194 6.8582 25 1 1.6950 -15.4964 6.6225 26 1 3.6286 -15.9034 5.2168 27 6 2.0673 -9.2786 2.8357 28 6 2.5111 -7.9773 2.8924 29 6 1.9953 -0.7708 1.1337 30 1 -0.3634 0.4512 -0.9233 31 1 -0.3633 -1.0253 0.0710 32 1 -0.3633 0.5740 0.8525 33 1 1.7324 1.8609 0.9375 34 1 1.5633 1.9257 -0.8330 35 1 3.9098 2.3513 -0.1312 36 1 3.7818 0.8572 -1.0908 37 1 3.8887 1.0355 1.9559 38 1 5.1998 0.4714 0.8915 39 1 3.7283 -1.1934 3.1405 40 1 5.1576 -1.6483 2.1823 41 1 3.0106 -3.3195 1.4254 42 1 2.8235 -5.6124 2.2370 43 1 4.4680 -5.8690 4.8128 44 1 4.3562 -8.1752 5.7441 45 1 3.5467 -10.4915 5.6350 46 1 1.1280 -15.0482 3.6202 47 1 1.4296 -9.5958 2.0238 48 1 2.2220 -7.2734 2.1260 49 1 1.5635 -1.7715 1.1242 50 1 1.7325 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108335797.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:16 Heat of formation + Delta-G solvation = -32.756136 kcal Electronic energy + Delta-G solvation = -28053.282261 eV Core-core repulsion = 24045.752458 eV Total energy + Delta-G solvation = -4007.529803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.03304 -39.27114 -38.96728 -36.90381 -35.51898 -33.64543 -33.19046 -32.30265 -31.41923 -30.42673 -28.40248 -27.26979 -26.35525 -25.57881 -23.51998 -23.03531 -22.19373 -21.78711 -20.75470 -20.16485 -19.26227 -18.16019 -17.12890 -17.07041 -16.18458 -16.06566 -15.79362 -15.12918 -14.99152 -14.79400 -14.77075 -14.54203 -14.41579 -14.02147 -13.82270 -13.67843 -13.35016 -13.21107 -13.03959 -12.97439 -12.72524 -12.59524 -12.52655 -11.93731 -11.88794 -11.75612 -11.71012 -11.51090 -11.14714 -11.11780 -11.07601 -10.92027 -10.78558 -10.65849 -10.53043 -9.77486 -9.60355 -9.49289 -9.12342 -8.84720 -8.78337 -8.38042 -7.11141 -6.65175 -4.20081 1.08107 2.13653 2.56670 3.03572 3.04925 3.10575 3.23129 3.44390 3.60253 3.82254 4.28693 4.33069 4.43834 4.51313 4.61740 4.78767 4.91913 4.92304 5.01310 5.02146 5.04314 5.05366 5.11919 5.27237 5.28674 5.30313 5.33354 5.43212 5.47963 5.49168 5.53222 5.56047 5.62741 5.67389 5.72127 5.77366 5.96493 6.01618 6.12325 6.36292 6.47472 6.50385 6.60532 6.61648 6.62312 6.79438 6.92407 7.13373 7.23932 7.28459 7.56019 7.64125 7.80307 8.35849 8.79779 9.46796 10.51537 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.001488 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.757123 B =18817.847410 C =19696.457280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.053 3.947 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.096 4.096 7 H 0.087 0.913 8 C 0.127 3.873 9 N -0.734 5.734 10 C 0.555 3.445 11 O -0.560 6.560 12 C -0.283 4.283 13 C 0.038 3.962 14 C -0.198 4.198 15 C -0.035 4.035 16 C -0.242 4.242 17 C 0.167 3.833 18 O -0.163 6.163 19 C -0.393 4.393 20 H 0.098 0.902 21 C 0.041 3.959 22 N -0.852 5.852 23 Si 0.945 3.055 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.199 4.199 28 C -0.043 4.043 29 C 0.059 3.941 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.400 0.600 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.131 0.869 46 H 0.273 0.727 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.077 0.923 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.479 26.678 -6.705 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.075 4.075 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.116 4.116 7 H 0.106 0.894 8 C 0.003 3.997 9 N -0.386 5.386 10 C 0.347 3.653 11 O -0.441 6.441 12 C -0.304 4.304 13 C 0.018 3.982 14 C -0.200 4.200 15 C -0.054 4.054 16 C -0.261 4.261 17 C 0.110 3.890 18 O -0.064 6.064 19 C -0.469 4.469 20 H 0.115 0.885 21 C -0.165 4.165 22 N -0.485 5.485 23 Si 0.769 3.231 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.219 4.219 28 C -0.061 4.061 29 C -0.069 4.069 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.235 0.765 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.132 0.868 45 H 0.149 0.851 46 H 0.083 0.917 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.095 0.905 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.861 26.338 -6.720 27.245 hybrid contribution -0.334 -0.343 0.989 1.098 sum 1.527 25.995 -5.732 26.663 Atomic orbital electron populations 1.22367 0.87000 1.02213 1.00828 1.61903 1.07747 1.13760 1.43371 1.22124 0.95743 0.89144 1.00460 1.21572 0.94289 1.00219 0.99298 1.21556 1.00338 0.94461 0.98892 1.21439 0.94635 0.96525 0.98952 0.89448 1.21294 0.99245 0.81359 0.97841 1.45878 1.53317 1.10628 1.28750 1.18415 0.79714 0.86064 0.81100 1.90773 1.38178 1.80180 1.34939 1.22439 1.10566 0.92795 1.04589 1.22280 0.90456 0.90984 0.94482 1.18467 1.08026 0.93189 1.00270 1.20993 0.95886 0.92411 0.96066 1.21102 1.05879 0.97073 1.02072 1.19613 0.90713 0.86047 0.92592 1.83905 1.57462 1.14345 1.50682 1.21527 1.30373 0.87824 1.07128 0.88483 1.25391 0.96331 0.96699 0.98044 1.70021 1.31783 1.16157 1.30512 0.85581 0.78778 0.79545 0.79202 1.18861 1.19928 1.19913 1.20155 1.08062 0.92967 1.00681 1.20884 0.94627 0.94478 0.96137 1.22162 0.94729 0.98474 0.91517 0.91251 0.91143 0.95665 0.94920 0.90755 0.91295 0.90900 0.91868 0.91174 0.91765 0.91329 0.76546 0.85909 0.85962 0.86816 0.85118 0.91654 0.86129 0.86405 0.90481 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.62 60.06 0.58 0.73 16 2 N -0.54 -3.89 4.91 -242.96 -1.19 -5.08 16 3 C 0.05 0.33 5.46 -3.83 -0.02 0.31 16 4 C -0.12 -0.64 6.09 -26.65 -0.16 -0.80 16 5 C -0.11 -0.69 5.29 -26.61 -0.14 -0.83 16 6 C -0.10 -0.66 2.39 -90.54 -0.22 -0.88 16 7 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 8 C 0.13 1.14 5.07 -4.04 -0.02 1.12 16 9 N -0.73 -7.44 5.29 -61.76 -0.33 -7.77 16 10 C 0.56 7.75 7.74 -13.04 -0.10 7.65 16 11 O -0.56 -9.83 16.23 5.17 0.08 -9.75 16 12 C -0.28 -3.85 9.41 -37.51 -0.35 -4.20 16 13 C 0.04 0.58 9.45 -37.20 -0.35 0.22 16 14 C -0.20 -3.39 5.87 -105.03 -0.62 -4.00 16 15 C -0.04 -0.63 9.78 -39.14 -0.38 -1.01 16 16 C -0.24 -5.02 9.14 -39.47 -0.36 -5.38 16 17 C 0.17 3.83 6.66 -38.89 -0.26 3.57 16 18 O -0.16 -4.42 9.74 0.72 0.01 -4.42 16 19 C -0.39 -10.45 9.48 30.91 0.29 -10.15 16 20 H 0.10 2.38 5.18 -52.49 -0.27 2.10 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.85 -23.83 13.67 55.48 0.76 -23.07 16 23 Si 0.94 19.53 29.55 -169.99 -5.02 14.51 16 24 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 C -0.20 -3.98 9.97 -39.46 -0.39 -4.38 16 28 C -0.04 -0.73 9.40 -39.14 -0.37 -1.10 16 29 C 0.06 0.43 4.61 -3.83 -0.02 0.41 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.42 8.02 -51.93 -0.42 0.00 16 32 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.40 3.15 7.65 -40.82 -0.31 2.84 16 42 H 0.12 1.43 6.07 -52.48 -0.32 1.11 16 43 H 0.12 1.86 7.52 -52.49 -0.39 1.47 16 44 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.13 2.69 5.62 -52.49 -0.29 2.39 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 48 H 0.12 1.63 6.16 -52.49 -0.32 1.31 16 49 H 0.08 0.55 7.11 -51.93 -0.37 0.18 16 50 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 407.08 15.07 6.13 6.13 Total: -1.00 -31.01 407.08 -10.30 -41.31 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.75 Total: 5.86 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.99 Total: -17.74 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.76 Total: -35.92 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.09 Total: -14.16 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.01 -10.30 -41.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108335797.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.556 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds