Wall clock time and date at job start Wed Apr 1 2020 03:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46843 * 110.99852 * 2 1 4 4 C 1.53044 * 109.52431 * 185.84225 * 3 2 1 5 5 C 1.53116 * 109.27612 * 300.82015 * 4 3 2 6 6 C 1.53118 * 109.16198 * 57.65182 * 5 4 3 7 7 H 1.09006 * 109.49949 * 62.32884 * 6 5 4 8 8 C 1.52999 * 109.50478 * 182.40062 * 6 5 4 9 9 N 1.46495 * 109.47327 * 185.00207 * 8 6 5 10 10 C 1.34779 * 120.00066 * 180.02562 * 9 8 6 11 11 O 1.21717 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.46255 * 120.00194 * 179.97438 * 10 9 8 13 13 C 1.35020 * 120.00290 * 179.97438 * 12 10 9 14 14 C 1.46955 * 119.99917 * 180.02562 * 13 12 10 15 15 C 1.40028 * 120.10018 * 180.02562 * 14 13 12 16 16 C 1.37598 * 119.89920 * 180.02562 * 15 14 13 17 17 C 1.39170 * 120.10132 * 0.02562 * 16 15 14 18 18 O 1.35574 * 119.89826 * 179.97438 * 17 16 15 19 19 C 1.34784 * 117.00043 * 354.45047 * 18 17 16 20 20 H 1.07998 * 119.99430 * 5.05022 * 19 18 17 21 21 C 1.38711 * 119.99929 * 185.05942 * 19 18 17 22 22 N 1.31509 * 120.00340 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99952 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47211 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47262 * 119.99798 * 23 21 19 26 26 H 1.48500 * 109.47339 * 239.99404 * 23 21 19 27 27 C 1.39177 * 120.20441 * 0.25482 * 17 16 15 28 28 C 1.37606 * 120.10039 * 359.44578 * 27 17 16 29 29 C 1.46849 * 111.00289 * 124.20900 * 2 1 3 30 30 H 1.08998 * 109.47555 * 63.95791 * 1 2 3 31 31 H 1.09005 * 109.46811 * 183.95926 * 1 2 3 32 32 H 1.09001 * 109.47025 * 303.95165 * 1 2 3 33 33 H 1.08998 * 109.46672 * 65.82400 * 3 2 1 34 34 H 1.09001 * 109.46110 * 305.85659 * 3 2 1 35 35 H 1.09000 * 109.50174 * 180.87615 * 4 3 2 36 36 H 1.09005 * 109.53169 * 60.77964 * 4 3 2 37 37 H 1.08998 * 109.52083 * 297.74672 * 5 4 3 38 38 H 1.08996 * 109.57646 * 177.59051 * 5 4 3 39 39 H 1.09004 * 109.47066 * 65.00199 * 8 6 5 40 40 H 1.08997 * 109.47108 * 305.00883 * 8 6 5 41 41 H 0.96995 * 120.00025 * 0.02562 * 9 8 6 42 42 H 1.08004 * 119.99653 * 0.02562 * 12 10 9 43 43 H 1.07995 * 119.99785 * 0.02562 * 13 12 10 44 44 H 1.08001 * 120.04682 * 0.03930 * 15 14 13 45 45 H 1.08002 * 119.94958 * 180.02562 * 16 15 14 46 46 H 0.97002 * 120.00766 * 179.97438 * 22 21 19 47 47 H 1.08000 * 119.95409 * 179.70286 * 27 17 16 48 48 H 1.07998 * 120.04879 * 180.27555 * 28 27 17 49 49 H 1.08995 * 109.46150 * 54.14690 * 29 2 1 50 50 H 1.09000 * 109.46117 * 294.17883 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0143 6 6 3.5181 -0.8714 1.0208 7 1 3.7820 -1.3838 0.0956 8 6 4.0681 -1.6558 2.2137 9 7 3.5872 -3.0382 2.1528 10 6 3.9461 -3.9193 3.1075 11 8 4.6694 -3.5662 4.0206 12 6 3.4656 -5.2993 3.0470 13 6 3.8255 -6.1821 4.0031 14 6 3.3431 -7.5688 3.9420 15 6 3.7146 -8.4860 4.9327 16 6 3.2610 -9.7836 4.8711 17 6 2.4345 -10.1851 3.8258 18 8 1.9903 -11.4647 3.7689 19 6 2.4768 -12.3228 4.6874 20 1 3.1237 -11.9625 5.4736 21 6 2.1466 -13.6685 4.6228 22 7 1.3586 -14.1071 3.6657 23 14 2.8214 -14.8578 5.8954 24 1 3.6775 -14.1194 6.8582 25 1 1.6950 -15.4964 6.6225 26 1 3.6286 -15.9034 5.2168 27 6 2.0673 -9.2786 2.8357 28 6 2.5111 -7.9773 2.8924 29 6 1.9953 -0.7708 1.1337 30 1 -0.3634 0.4512 -0.9233 31 1 -0.3633 -1.0253 0.0710 32 1 -0.3633 0.5740 0.8525 33 1 1.7324 1.8609 0.9375 34 1 1.5633 1.9257 -0.8330 35 1 3.9098 2.3513 -0.1312 36 1 3.7818 0.8572 -1.0908 37 1 3.8887 1.0355 1.9559 38 1 5.1998 0.4714 0.8915 39 1 3.7283 -1.1934 3.1405 40 1 5.1576 -1.6483 2.1823 41 1 3.0106 -3.3195 1.4254 42 1 2.8235 -5.6124 2.2370 43 1 4.4680 -5.8690 4.8128 44 1 4.3562 -8.1752 5.7441 45 1 3.5467 -10.4915 5.6350 46 1 1.1280 -15.0482 3.6202 47 1 1.4296 -9.5958 2.0238 48 1 2.2220 -7.2734 2.1260 49 1 1.5635 -1.7715 1.1242 50 1 1.7325 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108335797.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:15 Heat of formation + Delta-G solvation = -52.350298 kcal Electronic energy + Delta-G solvation = -28054.131927 eV Core-core repulsion = 24045.752458 eV Total energy + Delta-G solvation = -4008.379470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.98622 -40.73624 -39.87203 -38.49053 -36.34924 -34.72930 -34.29689 -33.96262 -32.11884 -31.95004 -29.78013 -27.84178 -27.57395 -26.95324 -24.55583 -23.82502 -23.61502 -22.58688 -21.95305 -20.90322 -20.45741 -19.71267 -18.84448 -18.22970 -17.07122 -16.76853 -16.58149 -16.42777 -16.25083 -15.95091 -15.80888 -15.60987 -15.44059 -15.34015 -15.17184 -14.79779 -14.59248 -14.16379 -14.09787 -13.80408 -13.75661 -13.60165 -13.30500 -13.24425 -13.12739 -13.06769 -12.72896 -12.56058 -12.40086 -12.19653 -12.10435 -12.05339 -11.63264 -11.48937 -11.29300 -11.20684 -11.11735 -10.93287 -10.58006 -10.05554 -9.88677 -9.31166 -8.67273 -8.52051 -6.18210 -0.23599 0.59017 1.14368 1.36134 1.45335 1.53975 2.15336 2.29417 2.38693 2.86838 2.93607 3.18272 3.43033 3.73877 3.77412 3.83997 3.89386 3.95649 4.09214 4.13185 4.25224 4.32619 4.36798 4.41046 4.48559 4.51629 4.54878 4.56826 4.65594 4.67477 4.79357 4.80822 4.82377 4.95257 4.96079 5.03130 5.03694 5.06183 5.16938 5.20284 5.26943 5.29465 5.34296 5.43706 5.51341 5.59957 5.64470 5.82269 5.97771 6.09190 6.11097 6.12339 6.61150 6.92476 7.29773 7.69632 8.70193 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.001488 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.757123 B =18817.847410 C =19696.457280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.552 5.552 3 C 0.050 3.950 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.085 4.085 7 H 0.090 0.910 8 C 0.129 3.871 9 N -0.714 5.714 10 C 0.549 3.451 11 O -0.596 6.596 12 C -0.245 4.245 13 C 0.014 3.986 14 C -0.170 4.170 15 C -0.041 4.041 16 C -0.249 4.249 17 C 0.129 3.871 18 O -0.220 6.220 19 C -0.417 4.417 20 H 0.106 0.894 21 C -0.018 4.018 22 N -0.913 5.913 23 Si 1.019 2.981 24 H -0.251 1.251 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.207 4.207 28 C -0.038 4.038 29 C 0.060 3.940 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.029 0.971 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.415 0.585 42 H 0.152 0.848 43 H 0.124 0.876 44 H 0.144 0.856 45 H 0.124 0.876 46 H 0.275 0.725 47 H 0.123 0.877 48 H 0.161 0.839 49 H 0.079 0.921 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.415 30.113 -7.255 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.277 5.277 3 C -0.077 4.077 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.104 4.104 7 H 0.108 0.892 8 C 0.005 3.995 9 N -0.366 5.366 10 C 0.340 3.660 11 O -0.480 6.480 12 C -0.266 4.266 13 C -0.006 4.006 14 C -0.171 4.171 15 C -0.059 4.059 16 C -0.268 4.268 17 C 0.077 3.923 18 O -0.125 6.125 19 C -0.492 4.492 20 H 0.123 0.877 21 C -0.217 4.217 22 N -0.550 5.550 23 Si 0.838 3.162 24 H -0.174 1.174 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.226 4.226 28 C -0.055 4.055 29 C -0.068 4.068 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.252 0.748 42 H 0.170 0.830 43 H 0.142 0.858 44 H 0.161 0.839 45 H 0.142 0.858 46 H 0.084 0.916 47 H 0.141 0.859 48 H 0.178 0.822 49 H 0.097 0.903 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.798 29.865 -7.303 30.871 hybrid contribution -0.533 -0.714 1.016 1.351 sum 2.265 29.151 -6.287 29.907 Atomic orbital electron populations 1.22398 0.86538 1.02383 1.01167 1.61939 1.08296 1.14305 1.43134 1.22187 0.96203 0.88738 1.00597 1.21553 0.93811 1.00849 0.98774 1.21568 1.00693 0.93875 0.99119 1.21332 0.94447 0.96751 0.97840 0.89182 1.21347 0.99017 0.80670 0.98502 1.45786 1.52223 1.10649 1.27930 1.18532 0.79529 0.86608 0.81286 1.90776 1.39840 1.80793 1.36556 1.22778 1.07928 0.92165 1.03688 1.22163 0.92287 0.90112 0.95988 1.18785 1.05559 0.93853 0.98883 1.21318 0.96005 0.91258 0.97316 1.21196 1.05787 0.98339 1.01475 1.20192 0.92147 0.85584 0.94363 1.83886 1.60323 1.15999 1.52312 1.21940 1.31058 0.88570 1.07679 0.87721 1.26595 0.96561 0.98259 1.00259 1.70151 1.34860 1.16563 1.33466 0.84525 0.78269 0.76896 0.76535 1.17436 1.19304 1.19327 1.20429 1.08137 0.93841 1.00165 1.21291 0.93547 0.93777 0.96910 1.22139 0.94804 0.98557 0.91298 0.90540 0.91005 0.95798 0.95249 0.90061 0.90032 0.91158 0.92048 0.90607 0.92583 0.91803 0.74820 0.83049 0.85817 0.83850 0.85814 0.91606 0.85902 0.82197 0.90303 0.95479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.62 127.69 1.23 1.47 16 2 N -0.55 -6.61 4.91 -922.60 -4.53 -11.14 16 3 C 0.05 0.51 5.46 86.33 0.47 0.98 16 4 C -0.11 -0.96 6.09 30.65 0.19 -0.77 16 5 C -0.11 -1.10 5.29 30.67 0.16 -0.94 16 6 C -0.08 -0.94 2.39 -10.74 -0.03 -0.96 16 7 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 8 C 0.13 1.98 5.07 86.38 0.44 2.42 16 9 N -0.71 -11.89 5.29 -467.51 -2.47 -14.37 16 10 C 0.55 13.33 7.74 86.33 0.67 14.00 16 11 O -0.60 -19.40 16.23 -4.40 -0.07 -19.47 16 12 C -0.25 -5.52 9.41 23.61 0.22 -5.29 16 13 C 0.01 0.38 9.45 23.81 0.23 0.61 16 14 C -0.17 -5.27 5.87 -20.13 -0.12 -5.39 16 15 C -0.04 -1.39 9.78 22.55 0.22 -1.17 16 16 C -0.25 -10.45 9.14 22.34 0.20 -10.25 16 17 C 0.13 6.16 6.66 22.72 0.15 6.31 16 18 O -0.22 -12.76 9.74 -20.34 -0.20 -12.95 16 19 C -0.42 -23.48 9.48 67.93 0.64 -22.84 16 20 H 0.11 5.41 5.18 -2.91 -0.02 5.39 16 21 C -0.02 -0.99 5.49 84.85 0.47 -0.53 16 22 N -0.91 -54.36 13.67 21.62 0.30 -54.06 16 23 Si 1.02 41.56 29.55 68.60 2.03 43.59 16 24 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 25 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 26 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 27 C -0.21 -8.20 9.97 22.35 0.22 -7.98 16 28 C -0.04 -1.17 9.40 22.55 0.21 -0.95 16 29 C 0.06 0.72 4.61 86.32 0.40 1.11 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.70 8.02 -2.38 -0.02 0.68 16 32 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 35 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.41 4.68 7.65 -92.71 -0.71 3.97 16 42 H 0.15 2.55 6.07 -2.91 -0.02 2.53 16 43 H 0.12 3.37 7.52 -2.91 -0.02 3.35 16 44 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 45 H 0.12 5.27 5.62 -2.91 -0.02 5.26 16 46 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 47 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 48 H 0.16 3.55 6.16 -2.91 -0.02 3.54 16 49 H 0.08 0.89 7.11 -2.39 -0.02 0.87 16 50 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -72.23 407.08 1.26 -70.97 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.24 Total: 27.62 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 5.98 Total: -30.18 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -6.71 Total: -79.57 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.27 Total: -32.42 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -72.23 1.26 -70.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108335797.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.619 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds