Wall clock time and date at job start Wed Apr 1 2020 03:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47269 * 2 1 4 4 C 1.42899 * 114.00338 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46863 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.46557 * 180.02562 * 6 5 4 8 8 C 1.46845 * 110.99664 * 293.95127 * 7 6 5 9 9 C 1.53042 * 109.51955 * 174.16760 * 8 7 6 10 10 C 1.53120 * 109.28142 * 59.18010 * 9 8 7 11 11 H 1.08994 * 109.52464 * 62.25103 * 10 9 8 12 12 N 1.46498 * 109.57433 * 182.41273 * 10 9 8 13 13 C 1.34774 * 119.99732 * 274.70897 * 12 10 9 14 14 O 1.21279 * 120.00390 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00308 * 179.97438 * 13 12 10 16 16 S 1.80997 * 109.47479 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99884 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00158 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99629 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00103 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99585 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47409 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.46775 * 120.00151 * 21 19 17 24 24 H 1.48493 * 109.47212 * 239.99800 * 21 19 17 25 25 C 1.53120 * 109.15667 * 302.34405 * 10 9 8 26 26 H 1.08998 * 109.50560 * 297.67404 * 25 10 9 27 27 C 1.53006 * 109.50192 * 177.59378 * 25 10 9 28 28 C 1.46850 * 110.99292 * 169.70678 * 7 6 5 29 29 H 1.09006 * 109.46577 * 300.00234 * 1 2 3 30 30 H 1.08999 * 109.46918 * 59.99870 * 1 2 3 31 31 H 1.08991 * 109.47204 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47125 * 240.00252 * 2 1 3 33 33 H 1.09003 * 109.47390 * 120.00026 * 2 1 3 34 34 H 1.08996 * 109.47108 * 59.99497 * 4 3 2 35 35 H 1.09000 * 109.46599 * 300.00111 * 4 3 2 36 36 H 1.09004 * 109.47122 * 59.99990 * 5 4 3 37 37 H 1.08996 * 109.47076 * 299.99515 * 5 4 3 38 38 H 1.08991 * 109.47105 * 60.00434 * 6 5 4 39 39 H 1.08996 * 109.47168 * 299.99813 * 6 5 4 40 40 H 1.08999 * 109.46742 * 54.15298 * 8 7 6 41 41 H 1.09001 * 109.45896 * 294.17338 * 8 7 6 42 42 H 1.09007 * 109.50186 * 299.23663 * 9 8 7 43 43 H 1.09002 * 109.50118 * 179.12450 * 9 8 7 44 44 H 0.96997 * 120.00371 * 94.71091 * 12 10 9 45 45 H 1.09003 * 109.47370 * 300.00962 * 15 13 12 46 46 H 1.09005 * 109.47130 * 60.00267 * 15 13 12 47 47 H 0.96997 * 119.99829 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.47002 * 60.07882 * 27 25 10 49 49 H 1.08993 * 109.46955 * 180.08319 * 27 25 10 50 50 H 1.09000 * 109.47050 * 300.08148 * 27 25 10 51 51 H 1.09004 * 109.43347 * 65.79696 * 28 7 6 52 52 H 1.09006 * 109.49564 * 305.83297 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3507 3.0591 -0.0012 7 7 5.7294 4.4785 -0.0011 8 6 5.3273 5.1304 -1.2540 9 6 5.6049 6.6326 -1.1608 10 6 7.0978 6.8559 -0.9037 11 1 7.6743 6.4639 -1.7415 12 7 7.3613 8.2894 -0.7561 13 6 7.5743 9.0512 -1.8472 14 8 7.5472 8.5502 -2.9514 15 6 7.8448 10.5259 -1.6956 16 16 8.0868 11.2662 -3.3294 17 6 8.3769 12.9414 -2.8663 18 1 8.3656 13.2232 -1.8239 19 6 8.6189 13.8990 -3.8416 20 7 8.6322 13.5556 -5.1123 21 14 8.9257 15.6751 -3.3507 22 1 8.8585 15.7988 -1.8725 23 1 10.2707 16.0934 -3.8214 24 1 7.8926 16.5448 -3.9682 25 6 7.5010 6.1266 0.3808 26 1 6.9531 6.5458 1.2247 27 6 9.0039 6.2946 0.6133 28 6 7.1684 4.6391 0.2439 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8333 0.9767 -0.8907 35 1 3.8340 0.9764 0.8892 36 1 3.4230 3.4222 0.8889 37 1 3.4224 3.4216 -0.8912 38 1 5.7534 2.5753 -0.8909 39 1 5.7534 2.5760 0.8890 40 1 4.2629 4.9676 -1.4228 41 1 5.8954 4.7069 -2.0823 42 1 5.0266 7.0594 -0.3413 43 1 5.3208 7.1138 -2.0966 44 1 7.3826 8.6902 0.1269 45 1 6.9969 11.0022 -1.2032 46 1 8.7424 10.6707 -1.0942 47 1 8.8017 14.2247 -5.7937 48 1 9.2405 7.3543 0.7093 49 1 9.2906 5.7740 1.5270 50 1 9.5513 5.8751 -0.2308 51 1 7.7278 4.2171 -0.5911 52 1 7.4411 4.1199 1.1628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115273920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:19 Heat of formation + Delta-G solvation = -102.111354 kcal Electronic energy + Delta-G solvation = -27468.573678 eV Core-core repulsion = 23593.480359 eV Total energy + Delta-G solvation = -3875.093320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.16024 -38.77165 -38.28915 -35.81769 -33.42072 -32.61296 -32.41488 -31.64367 -30.55031 -28.85902 -26.76401 -25.63824 -25.30712 -23.25210 -23.08767 -22.61654 -20.85566 -20.34144 -19.95373 -17.79756 -17.18505 -16.80664 -16.53219 -16.26848 -15.67603 -15.57365 -15.00604 -14.91415 -14.79376 -14.49996 -14.23306 -14.10922 -14.05432 -13.41976 -13.24102 -13.09095 -13.05388 -12.87838 -12.55788 -12.36441 -12.18168 -12.03103 -12.02708 -11.96406 -11.67467 -11.36784 -11.25879 -11.23002 -11.06204 -11.03331 -11.00378 -10.78060 -10.71308 -10.49090 -10.01397 -9.78569 -9.33527 -9.06436 -8.80402 -8.61627 -8.21223 -6.48174 -6.20665 -3.90760 3.05863 3.09371 3.13731 3.22373 3.29341 3.34341 3.67453 3.75539 4.21666 4.41114 4.48596 4.58783 4.64812 4.68332 4.71371 4.83411 4.87232 4.91902 4.99112 5.03883 5.06882 5.13801 5.14664 5.15029 5.22553 5.25113 5.32967 5.39132 5.44007 5.44772 5.45729 5.54727 5.66974 5.69073 5.70318 5.77794 5.78208 5.86830 5.88816 5.92249 6.02180 6.09749 6.16717 6.26733 6.71278 6.75089 6.80821 6.83086 7.61187 7.77770 8.36730 8.66822 9.24937 10.86849 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.001612 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.543098 B =17363.904981 C =18209.476653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.064 3.936 5 C -0.117 4.117 6 C 0.060 3.940 7 N -0.538 5.538 8 C 0.056 3.944 9 C -0.128 4.128 10 C 0.152 3.848 11 H 0.084 0.916 12 N -0.732 5.732 13 C 0.533 3.467 14 O -0.519 6.519 15 C -0.154 4.154 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.094 4.094 26 H 0.084 0.916 27 C -0.147 4.147 28 C 0.066 3.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.397 0.603 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.268 0.732 48 H 0.062 0.938 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.037 0.963 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.752 -26.887 15.428 32.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.309 6.309 4 C -0.013 4.013 5 C -0.154 4.154 6 C -0.068 4.068 7 N -0.263 5.263 8 C -0.073 4.073 9 C -0.167 4.167 10 C 0.046 3.954 11 H 0.102 0.898 12 N -0.385 5.385 13 C 0.319 3.681 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.113 4.113 26 H 0.102 0.898 27 C -0.205 4.205 28 C -0.063 4.063 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.231 0.769 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.055 0.945 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.135 -27.272 13.762 31.885 hybrid contribution 0.845 1.262 1.322 2.013 sum -8.291 -26.011 15.084 31.190 Atomic orbital electron populations 1.21750 0.93673 1.02253 1.03279 1.22456 0.95700 0.83794 0.99976 1.87893 1.21162 1.26423 1.95420 1.22428 0.81261 0.97560 1.00017 1.21509 0.95060 0.94582 1.04285 1.21936 0.95121 0.88787 1.00982 1.61890 1.16063 1.12900 1.35419 1.22138 1.01093 0.94444 0.89583 1.22000 0.96449 0.95072 1.03160 1.20942 0.95650 0.80956 0.97816 0.89825 1.46040 1.74661 1.08431 1.09399 1.20292 0.75343 0.88338 0.84117 1.90692 1.49242 1.74119 1.25242 1.23535 1.04523 0.94174 1.08191 1.85388 1.92800 1.05357 0.99888 1.22916 1.56174 0.93504 0.95690 0.90899 1.24990 0.94724 0.99394 0.94465 1.70029 1.46198 1.34469 0.99623 0.86124 0.78030 0.82708 0.78677 1.19612 1.20586 1.20570 1.21421 0.96887 0.94965 0.98071 0.89780 1.21799 0.94576 1.02514 1.01590 1.22080 0.87297 0.95967 1.00908 0.91793 0.91759 0.91111 0.93473 0.93479 0.93498 0.93349 0.90118 0.90843 0.94657 0.90624 0.90099 0.94553 0.90893 0.90493 0.76901 0.89272 0.89325 0.92261 0.91872 0.92491 0.92535 0.94525 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.06 0.36 6.66 37.16 0.25 0.61 16 3 O -0.39 -3.46 10.34 -35.23 -0.36 -3.83 16 4 C 0.06 0.45 5.94 37.16 0.22 0.67 16 5 C -0.12 -0.87 5.52 -26.73 -0.15 -1.02 16 6 C 0.06 0.43 4.96 -3.82 -0.02 0.41 16 7 N -0.54 -4.71 4.65 -234.66 -1.09 -5.80 16 8 C 0.06 0.55 5.30 -3.83 -0.02 0.53 16 9 C -0.13 -1.50 5.68 -26.65 -0.15 -1.65 16 10 C 0.15 1.82 1.94 -67.81 -0.13 1.69 16 11 H 0.08 1.20 7.58 -51.93 -0.39 0.81 16 12 N -0.73 -9.76 4.45 -53.69 -0.24 -10.00 16 13 C 0.53 9.89 7.82 -10.99 -0.09 9.81 16 14 O -0.52 -11.71 15.52 5.56 0.09 -11.62 16 15 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 21 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.09 -0.85 2.44 -90.54 -0.22 -1.07 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 C -0.15 -1.26 9.06 37.16 0.34 -0.93 16 28 C 0.07 0.54 4.74 -3.83 -0.02 0.53 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.62 6.44 -51.93 -0.33 0.28 16 38 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 39 H 0.08 0.46 7.98 -51.93 -0.41 0.05 16 40 H 0.08 0.76 6.22 -51.93 -0.32 0.44 16 41 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.40 4.23 8.53 -40.82 -0.35 3.88 16 45 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 46 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 47 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.06 0.58 7.62 -51.93 -0.40 0.19 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.08 0.55 8.01 -51.93 -0.42 0.13 16 LS Contribution 426.17 15.07 6.42 6.42 Total: -1.00 -34.19 426.17 -10.66 -44.85 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -9.78 Total: -0.32 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 0.81 Total: -6.75 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: -0.60 Total: -41.35 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.28 Total: -15.45 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -34.19 -10.66 -44.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115273920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.264 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds