Wall clock time and date at job start Wed Apr 1 2020 03:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47269 * 2 1 4 4 C 1.42899 * 114.00338 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46863 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.46557 * 180.02562 * 6 5 4 8 8 C 1.46845 * 110.99664 * 293.95127 * 7 6 5 9 9 C 1.53042 * 109.51955 * 174.16760 * 8 7 6 10 10 C 1.53120 * 109.28142 * 59.18010 * 9 8 7 11 11 H 1.08994 * 109.52464 * 62.25103 * 10 9 8 12 12 N 1.46498 * 109.57433 * 182.41273 * 10 9 8 13 13 C 1.34774 * 119.99732 * 274.70897 * 12 10 9 14 14 O 1.21279 * 120.00390 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00308 * 179.97438 * 13 12 10 16 16 S 1.80997 * 109.47479 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99884 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00158 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99629 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00103 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99585 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47409 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.46775 * 120.00151 * 21 19 17 24 24 H 1.48493 * 109.47212 * 239.99800 * 21 19 17 25 25 C 1.53120 * 109.15667 * 302.34405 * 10 9 8 26 26 H 1.08998 * 109.50560 * 297.67404 * 25 10 9 27 27 C 1.53006 * 109.50192 * 177.59378 * 25 10 9 28 28 C 1.46850 * 110.99292 * 169.70678 * 7 6 5 29 29 H 1.09006 * 109.46577 * 300.00234 * 1 2 3 30 30 H 1.08999 * 109.46918 * 59.99870 * 1 2 3 31 31 H 1.08991 * 109.47204 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47125 * 240.00252 * 2 1 3 33 33 H 1.09003 * 109.47390 * 120.00026 * 2 1 3 34 34 H 1.08996 * 109.47108 * 59.99497 * 4 3 2 35 35 H 1.09000 * 109.46599 * 300.00111 * 4 3 2 36 36 H 1.09004 * 109.47122 * 59.99990 * 5 4 3 37 37 H 1.08996 * 109.47076 * 299.99515 * 5 4 3 38 38 H 1.08991 * 109.47105 * 60.00434 * 6 5 4 39 39 H 1.08996 * 109.47168 * 299.99813 * 6 5 4 40 40 H 1.08999 * 109.46742 * 54.15298 * 8 7 6 41 41 H 1.09001 * 109.45896 * 294.17338 * 8 7 6 42 42 H 1.09007 * 109.50186 * 299.23663 * 9 8 7 43 43 H 1.09002 * 109.50118 * 179.12450 * 9 8 7 44 44 H 0.96997 * 120.00371 * 94.71091 * 12 10 9 45 45 H 1.09003 * 109.47370 * 300.00962 * 15 13 12 46 46 H 1.09005 * 109.47130 * 60.00267 * 15 13 12 47 47 H 0.96997 * 119.99829 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.47002 * 60.07882 * 27 25 10 49 49 H 1.08993 * 109.46955 * 180.08319 * 27 25 10 50 50 H 1.09000 * 109.47050 * 300.08148 * 27 25 10 51 51 H 1.09004 * 109.43347 * 65.79696 * 28 7 6 52 52 H 1.09006 * 109.49564 * 305.83297 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3507 3.0591 -0.0012 7 7 5.7294 4.4785 -0.0011 8 6 5.3273 5.1304 -1.2540 9 6 5.6049 6.6326 -1.1608 10 6 7.0978 6.8559 -0.9037 11 1 7.6743 6.4639 -1.7415 12 7 7.3613 8.2894 -0.7561 13 6 7.5743 9.0512 -1.8472 14 8 7.5472 8.5502 -2.9514 15 6 7.8448 10.5259 -1.6956 16 16 8.0868 11.2662 -3.3294 17 6 8.3769 12.9414 -2.8663 18 1 8.3656 13.2232 -1.8239 19 6 8.6189 13.8990 -3.8416 20 7 8.6322 13.5556 -5.1123 21 14 8.9257 15.6751 -3.3507 22 1 8.8585 15.7988 -1.8725 23 1 10.2707 16.0934 -3.8214 24 1 7.8926 16.5448 -3.9682 25 6 7.5010 6.1266 0.3808 26 1 6.9531 6.5458 1.2247 27 6 9.0039 6.2946 0.6133 28 6 7.1684 4.6391 0.2439 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8333 0.9767 -0.8907 35 1 3.8340 0.9764 0.8892 36 1 3.4230 3.4222 0.8889 37 1 3.4224 3.4216 -0.8912 38 1 5.7534 2.5753 -0.8909 39 1 5.7534 2.5760 0.8890 40 1 4.2629 4.9676 -1.4228 41 1 5.8954 4.7069 -2.0823 42 1 5.0266 7.0594 -0.3413 43 1 5.3208 7.1138 -2.0966 44 1 7.3826 8.6902 0.1269 45 1 6.9969 11.0022 -1.2032 46 1 8.7424 10.6707 -1.0942 47 1 8.8017 14.2247 -5.7937 48 1 9.2405 7.3543 0.7093 49 1 9.2906 5.7740 1.5270 50 1 9.5513 5.8751 -0.2308 51 1 7.7278 4.2171 -0.5911 52 1 7.4411 4.1199 1.1628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115273920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:18 Heat of formation + Delta-G solvation = -125.544258 kcal Electronic energy + Delta-G solvation = -27469.589805 eV Core-core repulsion = 23593.480359 eV Total energy + Delta-G solvation = -3876.109447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23254 -39.81191 -38.99649 -36.75600 -34.59078 -34.38561 -33.35330 -32.50908 -31.33937 -30.21238 -27.70663 -27.45113 -26.24680 -23.99437 -23.67119 -23.33466 -21.66594 -21.51572 -20.97213 -19.75428 -17.84662 -17.78305 -17.52129 -17.33324 -16.88295 -16.52849 -16.44746 -16.17425 -15.90388 -15.62004 -15.19195 -15.04376 -14.93898 -14.63221 -14.58868 -14.18915 -13.86008 -13.73719 -13.54242 -13.43753 -13.15951 -12.97074 -12.91534 -12.84996 -12.70452 -12.59632 -12.51644 -12.35069 -12.13907 -11.94698 -11.89730 -11.78507 -11.70288 -11.49926 -11.37748 -11.15862 -10.87224 -10.54056 -10.26961 -10.04341 -9.33037 -8.66511 -8.34910 -6.12768 1.27333 1.41261 1.47293 1.58510 1.63111 2.25708 2.30300 2.54158 2.99447 3.04458 3.32216 3.58952 3.76800 3.93870 3.97607 4.02308 4.08640 4.15006 4.16906 4.27679 4.31089 4.37030 4.37751 4.42842 4.47780 4.49357 4.50024 4.52369 4.55272 4.66421 4.70356 4.74563 4.81964 4.87050 4.92456 4.95534 5.01925 5.07337 5.14124 5.18048 5.22537 5.26882 5.29331 5.39142 5.42136 5.55427 6.04246 6.11475 6.20044 6.30683 6.53966 7.06634 7.27397 8.74633 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.001612 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.543098 B =17363.904981 C =18209.476653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.417 6.417 4 C 0.064 3.936 5 C -0.111 4.111 6 C 0.063 3.937 7 N -0.540 5.540 8 C 0.062 3.938 9 C -0.123 4.123 10 C 0.151 3.849 11 H 0.057 0.943 12 N -0.706 5.706 13 C 0.535 3.465 14 O -0.566 6.566 15 C -0.129 4.129 16 S -0.152 6.152 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.083 4.083 26 H 0.097 0.903 27 C -0.145 4.145 28 C 0.066 3.934 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.415 0.585 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.271 0.729 48 H 0.056 0.944 49 H 0.080 0.920 50 H 0.044 0.956 51 H 0.031 0.969 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 -27.545 18.651 34.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.337 6.337 4 C -0.013 4.013 5 C -0.148 4.148 6 C -0.065 4.065 7 N -0.265 5.265 8 C -0.067 4.067 9 C -0.162 4.162 10 C 0.046 3.954 11 H 0.075 0.925 12 N -0.359 5.359 13 C 0.321 3.679 14 O -0.444 6.444 15 C -0.281 4.281 16 S 0.075 5.925 17 C -0.693 4.693 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.102 4.102 26 H 0.115 0.885 27 C -0.203 4.203 28 C -0.062 4.062 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.045 0.955 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.252 0.748 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.063 0.937 51 H 0.049 0.951 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.993 -27.960 17.049 33.960 hybrid contribution 0.754 1.332 0.382 1.578 sum -8.238 -26.628 17.431 32.875 Atomic orbital electron populations 1.21779 0.93296 1.03309 1.02545 1.22635 0.96127 0.82913 1.00880 1.87859 1.22182 1.28042 1.95615 1.22477 0.80657 0.97136 1.01005 1.21431 0.95299 0.95006 1.03111 1.21966 0.94769 0.87774 1.01975 1.61902 1.16448 1.13966 1.34154 1.22012 1.01246 0.93221 0.90175 1.21905 0.96164 0.96320 1.01771 1.21074 0.95528 0.79838 0.98941 0.92494 1.45794 1.72413 1.08824 1.08834 1.20048 0.75327 0.87957 0.84541 1.90683 1.51766 1.74681 1.27302 1.23377 1.06248 0.94880 1.03562 1.85578 1.93244 1.06898 1.06739 1.23244 1.56181 0.93651 0.96268 0.89933 1.26123 0.94076 1.04634 0.94257 1.70191 1.47295 1.36295 1.01057 0.84907 0.78016 0.75989 0.79044 1.17991 1.19909 1.19951 1.21371 0.97421 0.95197 0.96235 0.88485 1.21791 0.93862 1.02376 1.02252 1.22139 0.86840 0.95353 1.01873 0.92342 0.92646 0.89185 0.92762 0.92301 0.92883 0.91879 0.90990 0.92271 0.94456 0.88713 0.89741 0.95545 0.90124 0.93574 0.74798 0.87363 0.87243 0.92009 0.92455 0.90149 0.93716 0.95089 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 71.98 0.74 -0.76 16 2 C 0.05 0.58 6.66 71.98 0.48 1.06 16 3 O -0.42 -7.08 10.34 -148.98 -1.54 -8.62 16 4 C 0.06 0.80 5.94 71.98 0.43 1.23 16 5 C -0.11 -1.53 5.52 30.60 0.17 -1.36 16 6 C 0.06 0.77 4.96 86.30 0.43 1.19 16 7 N -0.54 -8.46 4.65 -896.33 -4.17 -12.63 16 8 C 0.06 1.22 5.30 86.33 0.46 1.68 16 9 C -0.12 -2.88 5.68 30.65 0.17 -2.70 16 10 C 0.15 3.55 1.94 45.07 0.09 3.64 16 11 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 12 N -0.71 -18.15 4.45 -442.17 -1.97 -20.12 16 13 C 0.54 20.00 7.82 87.66 0.69 20.68 16 14 O -0.57 -26.63 15.52 -3.02 -0.05 -26.68 16 15 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 16 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 17 C -0.55 -31.39 9.50 67.96 0.65 -30.75 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.79 5.49 84.86 0.47 1.25 16 20 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 21 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 25 C -0.08 -1.31 2.44 -10.74 -0.03 -1.33 16 26 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 27 C -0.15 -2.15 9.06 71.98 0.65 -1.50 16 28 C 0.07 0.93 4.74 86.32 0.41 1.34 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.06 0.98 6.44 -2.39 -0.02 0.96 16 38 H 0.04 0.46 8.12 -2.39 -0.02 0.44 16 39 H 0.09 0.84 7.98 -2.39 -0.02 0.82 16 40 H 0.08 1.60 6.22 -2.39 -0.01 1.59 16 41 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 44 H 0.41 7.85 8.53 -92.71 -0.79 7.06 16 45 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 46 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 47 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 48 H 0.06 0.92 7.62 -2.39 -0.02 0.90 16 49 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 52 H 0.10 1.02 8.01 -2.38 -0.02 1.00 16 Total: -1.00 -77.15 426.17 -0.26 -77.41 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.08 Total: 21.66 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 6.23 Total: -11.09 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -5.85 Total: -88.89 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.59 Total: -35.30 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -77.15 -0.26 -77.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115273920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.137 kcal (2) G-P(sol) polarization free energy of solvation -77.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds