Wall clock time and date at job start Wed Apr 1 2020 03:28:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42892 * 114.00485 * 2 1
4 4 C 1.53005 * 109.47581 * 180.02562 * 3 2 1
5 5 N 1.46503 * 109.46693 * 64.99937 * 4 3 2
6 6 C 1.46497 * 119.99826 * 269.99788 * 5 4 3
7 7 C 1.50695 * 109.47484 * 270.00283 * 6 5 4
8 8 H 1.07994 * 120.00049 * 0.02562 * 7 6 5
9 9 C 1.37882 * 120.00384 * 179.97438 * 7 6 5
10 10 N 1.31520 * 119.99298 * 0.02562 * 9 7 6
11 11 Si 1.86797 * 120.00273 * 180.02562 * 9 7 6
12 12 H 1.48493 * 109.47369 * 90.00369 * 11 9 7
13 13 H 1.48498 * 109.46837 * 210.00406 * 11 9 7
14 14 H 1.48504 * 109.46796 * 329.99938 * 11 9 7
15 15 C 1.34780 * 120.00064 * 90.00655 * 5 4 3
16 16 O 1.21282 * 119.99373 * 359.97438 * 15 5 4
17 17 C 1.50694 * 119.99700 * 179.97438 * 15 5 4
18 18 C 1.53005 * 109.46947 * 179.97438 * 17 15 5
19 19 C 1.50694 * 109.47326 * 180.02562 * 18 17 15
20 20 C 1.34244 * 126.49945 * 265.02407 * 19 18 17
21 21 N 1.36828 * 109.92765 * 179.73686 * 20 19 18
22 22 C 1.46503 * 125.05711 * 179.97438 * 21 20 19
23 23 C 1.37680 * 109.87568 * 359.97438 * 21 20 19
24 24 C 1.39131 * 133.50448 * 180.02562 * 23 21 20
25 25 C 1.37749 * 119.77553 * 180.02562 * 24 23 21
26 26 C 1.38836 * 120.66920 * 359.95844 * 25 24 23
27 27 C 1.36623 * 120.52390 * 0.04673 * 26 25 24
28 28 C 1.39627 * 119.76758 * 359.97438 * 27 26 25
29 29 H 1.09005 * 109.46524 * 300.00308 * 1 2 3
30 30 H 1.09000 * 109.46825 * 59.99677 * 1 2 3
31 31 H 1.08999 * 109.47466 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47334 * 59.99783 * 3 2 1
33 33 H 1.09002 * 109.47284 * 300.00118 * 3 2 1
34 34 H 1.08994 * 109.46834 * 305.00336 * 4 3 2
35 35 H 1.08991 * 109.47061 * 184.99996 * 4 3 2
36 36 H 1.09003 * 109.47062 * 30.00632 * 6 5 4
37 37 H 1.09005 * 109.47067 * 150.00277 * 6 5 4
38 38 H 0.97006 * 119.99020 * 180.02562 * 10 9 7
39 39 H 1.08995 * 109.47422 * 60.00147 * 17 15 5
40 40 H 1.09000 * 109.47336 * 299.99193 * 17 15 5
41 41 H 1.09007 * 109.47024 * 59.99507 * 18 17 15
42 42 H 1.09006 * 109.46958 * 299.99936 * 18 17 15
43 43 H 1.07997 * 125.03156 * 359.77062 * 20 19 18
44 44 H 1.08997 * 109.47231 * 90.02332 * 22 21 20
45 45 H 1.09007 * 109.46521 * 210.01702 * 22 21 20
46 46 H 1.08999 * 109.47081 * 330.01696 * 22 21 20
47 47 H 1.07997 * 120.11402 * 359.97438 * 24 23 21
48 48 H 1.07998 * 119.66512 * 179.97438 * 25 24 23
49 49 H 1.08000 * 119.73716 * 180.02562 * 26 25 24
50 50 H 1.08002 * 120.11285 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3053 0.0000
4 6 3.5356 1.1845 -0.0006
5 7 3.9757 0.5642 -1.2528
6 6 4.1052 -0.8922 -1.3428
7 6 5.5009 -1.2980 -0.9450
8 1 6.2195 -0.5463 -0.6539
9 6 5.8602 -2.6292 -0.9517
10 7 4.9849 -3.5447 -1.3058
11 14 7.5901 -3.1323 -0.4580
12 1 7.6338 -3.3843 1.0047
13 1 7.9723 -4.3693 -1.1851
14 1 8.5393 -2.0430 -0.8013
15 6 4.2616 1.3336 -2.3219
16 8 4.1541 2.5393 -2.2473
17 6 4.7149 0.6955 -3.6096
18 6 4.9705 1.7829 -4.6552
19 6 5.4231 1.1449 -5.9432
20 6 6.6922 0.9626 -6.3412
21 7 6.7140 0.3458 -7.5623
22 6 7.9264 -0.0103 -8.3037
23 6 5.4270 0.1096 -7.9905
24 6 4.8898 -0.4763 -9.1323
25 6 3.5228 -0.5688 -9.2753
26 6 2.6733 -0.0836 -8.2901
27 6 3.1795 0.4955 -7.1610
28 6 4.5620 0.6001 -6.9956
29 1 -0.3632 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 1.6887 1.8463 0.8899
33 1 1.6887 1.8463 -0.8900
34 1 3.8515 0.5681 0.8409
35 1 3.9786 2.1763 0.0889
36 1 3.3852 -1.3630 -0.6734
37 1 3.9119 -1.2116 -2.3669
38 1 5.2376 -4.4812 -1.3102
39 1 3.9412 0.0186 -3.9718
40 1 5.6340 0.1364 -3.4343
41 1 5.7440 2.4603 -4.2933
42 1 4.0511 2.3417 -4.8305
43 1 7.5664 1.2585 -5.7803
44 1 8.2409 -1.0159 -8.0244
45 1 7.7205 0.0219 -9.3737
46 1 8.7196 0.6981 -8.0648
47 1 5.5422 -0.8566 -9.9044
48 1 3.1077 -1.0236 -10.1626
49 1 1.6039 -0.1643 -8.4176
50 1 2.5125 0.8711 -6.3990
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000120585701.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:28:48
Heat of formation + Delta-G solvation = -27.165038 kcal
Electronic energy + Delta-G solvation = -30273.187154 eV
Core-core repulsion = 26265.899799 eV
Total energy + Delta-G solvation = -4007.287355 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.20760 -39.10503 -37.35182 -36.94163 -34.85888 -34.20754 -32.54797 -31.33383
-30.23250 -29.72308 -28.58876 -26.97069 -26.46795 -25.70218 -23.76838 -22.79268
-22.51094 -21.83419 -21.16473 -19.21132 -18.10246 -16.83875 -16.53270 -16.40607
-16.26790 -15.86467 -15.48755 -15.32851 -15.26380 -14.94331 -14.67925 -14.32710
-14.26044 -13.88692 -13.77054 -13.14834 -13.02998 -12.85332 -12.63184 -12.41270
-12.13428 -12.02458 -11.88483 -11.70147 -11.53992 -11.41239 -11.34074 -11.30921
-11.04624 -10.89519 -10.82310 -10.69876 -10.46443 -10.27445 -10.06466 -9.63894
-9.38211 -9.32811 -8.89299 -8.43667 -8.03154 -7.59576 -7.37646 -6.07362
-4.13923 1.26986 1.76380 2.82252 2.90315 3.26949 3.33787 3.36201
3.53387 4.01001 4.10607 4.22827 4.42124 4.67066 4.78137 4.94462
5.05433 5.09321 5.21630 5.25397 5.31660 5.38462 5.43869 5.52426
5.53270 5.63602 5.68085 5.70796 5.74531 5.77876 5.84521 5.88747
5.90441 5.97625 6.06161 6.18281 6.22983 6.35564 6.43464 6.52129
6.67533 6.75264 6.78921 6.91730 6.97727 7.01004 7.36056 7.42578
7.43771 7.54434 7.69275 7.89604 8.19989 8.49080 8.90649 9.14140
9.52594 10.99295
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.008014 B = 0.003654 C = 0.002986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3492.847412 B = 7660.170500 C = 9374.229775
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.375 6.375
3 C 0.048 3.952
4 C 0.121 3.879
5 N -0.588 5.588
6 C 0.240 3.760
7 C -0.536 4.536
8 H 0.058 0.942
9 C 0.065 3.935
10 N -0.889 5.889
11 Si 0.893 3.107
12 H -0.280 1.280
13 H -0.286 1.286
14 H -0.274 1.274
15 C 0.515 3.485
16 O -0.584 6.584
17 C -0.126 4.126
18 C -0.026 4.026
19 C -0.155 4.155
20 C 0.048 3.952
21 N -0.491 5.491
22 C 0.082 3.918
23 C 0.097 3.903
24 C -0.134 4.134
25 C -0.102 4.102
26 C -0.153 4.153
27 C -0.063 4.063
28 C -0.099 4.099
29 H 0.033 0.967
30 H 0.035 0.965
31 H 0.082 0.918
32 H 0.048 0.952
33 H 0.048 0.952
34 H 0.085 0.915
35 H 0.086 0.914
36 H 0.048 0.952
37 H 0.036 0.964
38 H 0.263 0.737
39 H 0.087 0.913
40 H 0.101 0.899
41 H 0.072 0.928
42 H 0.070 0.930
43 H 0.167 0.833
44 H 0.067 0.933
45 H 0.076 0.924
46 H 0.081 0.919
47 H 0.114 0.886
48 H 0.120 0.880
49 H 0.119 0.881
50 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.667 6.961 -11.709 13.723
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.293 6.293
3 C -0.029 4.029
4 C -0.003 4.003
5 N -0.318 5.318
6 C 0.120 3.880
7 C -0.575 4.575
8 H 0.077 0.923
9 C -0.137 4.137
10 N -0.527 5.527
11 Si 0.721 3.279
12 H -0.206 1.206
13 H -0.212 1.212
14 H -0.199 1.199
15 C 0.304 3.696
16 O -0.467 6.467
17 C -0.165 4.165
18 C -0.064 4.064
19 C -0.162 4.162
20 C -0.075 4.075
21 N -0.174 5.174
22 C -0.060 4.060
23 C -0.009 4.009
24 C -0.154 4.154
25 C -0.122 4.122
26 C -0.172 4.172
27 C -0.082 4.082
28 C -0.103 4.103
29 H 0.052 0.948
30 H 0.053 0.947
31 H 0.101 0.899
32 H 0.066 0.934
33 H 0.066 0.934
34 H 0.103 0.897
35 H 0.104 0.896
36 H 0.066 0.934
37 H 0.053 0.947
38 H 0.073 0.927
39 H 0.105 0.895
40 H 0.120 0.880
41 H 0.090 0.910
42 H 0.089 0.911
43 H 0.185 0.815
44 H 0.086 0.914
45 H 0.095 0.905
46 H 0.099 0.901
47 H 0.132 0.868
48 H 0.138 0.862
49 H 0.137 0.863
50 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -1.303 7.099 -11.833 13.860
hybrid contribution 0.854 -0.510 0.318 1.044
sum -0.449 6.589 -11.514 13.274
Atomic orbital electron populations
1.22675 0.82265 1.02346 0.99109 1.88062 1.18575 1.27486 1.95184
1.23025 0.95431 0.84860 0.99626 1.21302 0.90953 0.99499 0.88512
1.48187 1.63570 1.10003 1.10029 1.19457 0.97086 0.72774 0.98652
1.21526 0.97431 0.92317 1.46198 0.92333 1.24918 0.97303 0.96414
0.95110 1.69945 1.34271 1.01072 1.47453 0.86580 0.84665 0.78034
0.78655 1.20589 1.21210 1.19897 1.20630 0.76549 0.86562 0.85835
1.90562 1.56319 1.14892 1.84942 1.21566 1.04215 0.98763 0.91999
1.19649 1.01748 0.96044 0.88968 1.20360 0.91370 1.07223 0.97238
1.21621 0.98691 1.00464 0.86766 1.43707 1.04418 1.51869 1.17429
1.21879 0.85701 1.01694 0.96755 1.18250 0.83760 1.02227 0.96698
1.19928 0.95256 1.04134 0.96116 1.20732 0.92255 1.00113 0.99060
1.20579 0.99476 1.02281 0.94881 1.20318 0.93004 0.97641 0.97220
1.19121 0.92974 1.03296 0.94957 0.94799 0.94665 0.89908 0.93402
0.93418 0.89688 0.89605 0.93395 0.94652 0.92708 0.89467 0.88047
0.90957 0.91100 0.81543 0.91393 0.90508 0.90070 0.86831 0.86177
0.86297 0.86072
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.46 11.01 101.05 1.11 1.57 16
2 O -0.37 -6.89 9.53 -35.23 -0.34 -7.22 16
3 C 0.05 0.82 6.28 37.16 0.23 1.05 16
4 C 0.12 2.31 5.81 -4.04 -0.02 2.28 16
5 N -0.59 -12.76 2.42 -175.06 -0.42 -13.18 16
6 C 0.24 5.93 4.78 -5.20 -0.02 5.91 16
7 C -0.54 -14.25 9.28 -34.44 -0.32 -14.57 16
8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16
9 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16
10 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16
11 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16
12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
14 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16
15 C 0.51 10.87 7.67 -10.99 -0.08 10.79 16
16 O -0.58 -12.95 15.56 5.56 0.09 -12.87 16
17 C -0.13 -2.40 4.23 -27.88 -0.12 -2.52 16
18 C -0.03 -0.43 5.03 -27.88 -0.14 -0.57 16
19 C -0.16 -2.45 5.57 -102.71 -0.57 -3.02 16
20 C 0.05 0.68 11.20 -16.73 -0.19 0.49 16
21 N -0.49 -6.43 3.18 -121.80 -0.39 -6.81 16
22 C 0.08 0.71 11.03 59.85 0.66 1.37 16
23 C 0.10 1.41 6.81 -83.99 -0.57 0.84 16
24 C -0.13 -1.68 9.97 -39.43 -0.39 -2.07 16
25 C -0.10 -1.22 10.01 -39.54 -0.40 -1.61 16
26 C -0.15 -1.95 9.97 -39.94 -0.40 -2.34 16
27 C -0.06 -0.93 10.05 -39.65 -0.40 -1.33 16
28 C -0.10 -1.57 6.35 -105.14 -0.67 -2.24 16
29 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16
30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16
32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.08 1.64 8.07 -51.93 -0.42 1.22 16
35 H 0.09 1.56 7.42 -51.93 -0.39 1.17 16
36 H 0.05 1.28 7.12 -51.93 -0.37 0.91 16
37 H 0.04 0.92 6.44 -51.93 -0.33 0.58 16
38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16
39 H 0.09 1.70 7.40 -51.93 -0.38 1.31 16
40 H 0.10 2.07 8.00 -51.93 -0.42 1.66 16
41 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16
42 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16
43 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16
44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
45 H 0.08 0.55 8.10 -51.92 -0.42 0.13 16
46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
47 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16
48 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16
49 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16
50 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16
LS Contribution 417.51 15.07 6.29 6.29
Total: -1.00 -32.48 417.51 -9.63 -42.10
By element:
Atomic # 1 Polarization: 12.80 SS G_CDS: -8.19 Total: 4.61 kcal
Atomic # 6 Polarization: -1.91 SS G_CDS: -2.39 Total: -4.30 kcal
Atomic # 7 Polarization: -44.44 SS G_CDS: -0.07 Total: -44.52 kcal
Atomic # 8 Polarization: -19.84 SS G_CDS: -0.25 Total: -20.09 kcal
Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal
Total LS contribution 6.29 Total: 6.29 kcal
Total: -32.48 -9.63 -42.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000120585701.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.939 kcal
(2) G-P(sol) polarization free energy of solvation -32.476 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.537 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.165 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds