Wall clock time and date at job start Wed Apr 1 2020 03:28:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42892 * 114.00485 * 2 1
4 4 C 1.53005 * 109.47581 * 180.02562 * 3 2 1
5 5 N 1.46503 * 109.46693 * 64.99937 * 4 3 2
6 6 C 1.46497 * 119.99826 * 269.99788 * 5 4 3
7 7 C 1.50695 * 109.47484 * 270.00283 * 6 5 4
8 8 H 1.07994 * 120.00049 * 0.02562 * 7 6 5
9 9 C 1.37882 * 120.00384 * 179.97438 * 7 6 5
10 10 N 1.31520 * 119.99298 * 0.02562 * 9 7 6
11 11 Si 1.86797 * 120.00273 * 180.02562 * 9 7 6
12 12 H 1.48493 * 109.47369 * 90.00369 * 11 9 7
13 13 H 1.48498 * 109.46837 * 210.00406 * 11 9 7
14 14 H 1.48504 * 109.46796 * 329.99938 * 11 9 7
15 15 C 1.34780 * 120.00064 * 90.00655 * 5 4 3
16 16 O 1.21282 * 119.99373 * 359.97438 * 15 5 4
17 17 C 1.50694 * 119.99700 * 179.97438 * 15 5 4
18 18 C 1.53005 * 109.46947 * 179.97438 * 17 15 5
19 19 C 1.50694 * 109.47326 * 180.02562 * 18 17 15
20 20 C 1.34244 * 126.49945 * 265.02407 * 19 18 17
21 21 N 1.36828 * 109.92765 * 179.73686 * 20 19 18
22 22 C 1.46503 * 125.05711 * 179.97438 * 21 20 19
23 23 C 1.37680 * 109.87568 * 359.97438 * 21 20 19
24 24 C 1.39131 * 133.50448 * 180.02562 * 23 21 20
25 25 C 1.37749 * 119.77553 * 180.02562 * 24 23 21
26 26 C 1.38836 * 120.66920 * 359.95844 * 25 24 23
27 27 C 1.36623 * 120.52390 * 0.04673 * 26 25 24
28 28 C 1.39627 * 119.76758 * 359.97438 * 27 26 25
29 29 H 1.09005 * 109.46524 * 300.00308 * 1 2 3
30 30 H 1.09000 * 109.46825 * 59.99677 * 1 2 3
31 31 H 1.08999 * 109.47466 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47334 * 59.99783 * 3 2 1
33 33 H 1.09002 * 109.47284 * 300.00118 * 3 2 1
34 34 H 1.08994 * 109.46834 * 305.00336 * 4 3 2
35 35 H 1.08991 * 109.47061 * 184.99996 * 4 3 2
36 36 H 1.09003 * 109.47062 * 30.00632 * 6 5 4
37 37 H 1.09005 * 109.47067 * 150.00277 * 6 5 4
38 38 H 0.97006 * 119.99020 * 180.02562 * 10 9 7
39 39 H 1.08995 * 109.47422 * 60.00147 * 17 15 5
40 40 H 1.09000 * 109.47336 * 299.99193 * 17 15 5
41 41 H 1.09007 * 109.47024 * 59.99507 * 18 17 15
42 42 H 1.09006 * 109.46958 * 299.99936 * 18 17 15
43 43 H 1.07997 * 125.03156 * 359.77062 * 20 19 18
44 44 H 1.08997 * 109.47231 * 90.02332 * 22 21 20
45 45 H 1.09007 * 109.46521 * 210.01702 * 22 21 20
46 46 H 1.08999 * 109.47081 * 330.01696 * 22 21 20
47 47 H 1.07997 * 120.11402 * 359.97438 * 24 23 21
48 48 H 1.07998 * 119.66512 * 179.97438 * 25 24 23
49 49 H 1.08000 * 119.73716 * 180.02562 * 26 25 24
50 50 H 1.08002 * 120.11285 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3053 0.0000
4 6 3.5356 1.1845 -0.0006
5 7 3.9757 0.5642 -1.2528
6 6 4.1052 -0.8922 -1.3428
7 6 5.5009 -1.2980 -0.9450
8 1 6.2195 -0.5463 -0.6539
9 6 5.8602 -2.6292 -0.9517
10 7 4.9849 -3.5447 -1.3058
11 14 7.5901 -3.1323 -0.4580
12 1 7.6338 -3.3843 1.0047
13 1 7.9723 -4.3693 -1.1851
14 1 8.5393 -2.0430 -0.8013
15 6 4.2616 1.3336 -2.3219
16 8 4.1541 2.5393 -2.2473
17 6 4.7149 0.6955 -3.6096
18 6 4.9705 1.7829 -4.6552
19 6 5.4231 1.1449 -5.9432
20 6 6.6922 0.9626 -6.3412
21 7 6.7140 0.3458 -7.5623
22 6 7.9264 -0.0103 -8.3037
23 6 5.4270 0.1096 -7.9905
24 6 4.8898 -0.4763 -9.1323
25 6 3.5228 -0.5688 -9.2753
26 6 2.6733 -0.0836 -8.2901
27 6 3.1795 0.4955 -7.1610
28 6 4.5620 0.6001 -6.9956
29 1 -0.3632 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 1.6887 1.8463 0.8899
33 1 1.6887 1.8463 -0.8900
34 1 3.8515 0.5681 0.8409
35 1 3.9786 2.1763 0.0889
36 1 3.3852 -1.3630 -0.6734
37 1 3.9119 -1.2116 -2.3669
38 1 5.2376 -4.4812 -1.3102
39 1 3.9412 0.0186 -3.9718
40 1 5.6340 0.1364 -3.4343
41 1 5.7440 2.4603 -4.2933
42 1 4.0511 2.3417 -4.8305
43 1 7.5664 1.2585 -5.7803
44 1 8.2409 -1.0159 -8.0244
45 1 7.7205 0.0219 -9.3737
46 1 8.7196 0.6981 -8.0648
47 1 5.5422 -0.8566 -9.9044
48 1 3.1077 -1.0236 -10.1626
49 1 1.6039 -0.1643 -8.4176
50 1 2.5125 0.8711 -6.3990
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000120585701.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:28:47
Heat of formation + Delta-G solvation = -43.638933 kcal
Electronic energy + Delta-G solvation = -30273.901516 eV
Core-core repulsion = 26265.899799 eV
Total energy + Delta-G solvation = -4008.001717 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.22731 -40.79954 -38.73135 -37.91598 -36.61748 -35.47549 -34.53956 -32.60747
-31.21086 -31.14908 -29.67183 -28.86461 -27.57797 -26.91933 -25.10322 -24.72340
-23.53677 -23.23197 -22.19081 -20.32144 -19.82469 -18.60357 -18.14156 -17.50287
-17.46397 -17.35638 -16.93322 -16.62925 -16.34777 -16.24557 -16.12611 -16.02647
-15.63832 -14.92398 -14.77353 -14.54104 -14.48267 -14.07864 -13.78888 -13.60271
-13.51960 -13.44965 -13.29309 -13.08183 -13.02181 -12.82991 -12.72177 -12.71358
-12.54980 -12.50593 -12.11147 -12.05393 -11.90022 -11.87228 -11.65810 -11.54825
-10.79699 -10.61594 -10.48272 -10.34917 -9.40777 -9.06054 -8.42362 -8.15778
-6.30700 0.24569 0.74410 1.41798 1.42421 1.52682 1.72155 1.80035
1.98578 2.35256 2.49750 2.95048 3.02716 3.14227 3.76134 3.84834
3.86588 4.03322 4.15232 4.17196 4.24383 4.28760 4.32938 4.38737
4.40306 4.46197 4.51289 4.53401 4.56235 4.62588 4.67024 4.71729
4.76307 4.80785 4.84296 4.91042 4.96255 4.97730 5.04389 5.08469
5.27635 5.34078 5.37925 5.62096 5.69486 5.75228 5.87847 5.90341
5.92356 6.11781 6.29619 6.33131 6.48286 6.63103 6.86409 7.33715
7.45026 8.90043
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.008014 B = 0.003654 C = 0.002986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3492.847412 B = 7660.170500 C = 9374.229775
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.411 6.411
3 C 0.056 3.944
4 C 0.115 3.885
5 N -0.593 5.593
6 C 0.263 3.737
7 C -0.545 4.545
8 H 0.054 0.946
9 C 0.019 3.981
10 N -0.922 5.922
11 Si 0.957 3.043
12 H -0.274 1.274
13 H -0.282 1.282
14 H -0.267 1.267
15 C 0.512 3.488
16 O -0.593 6.593
17 C -0.113 4.113
18 C -0.009 4.009
19 C -0.191 4.191
20 C 0.055 3.945
21 N -0.490 5.490
22 C 0.074 3.926
23 C 0.076 3.924
24 C -0.135 4.135
25 C -0.104 4.104
26 C -0.153 4.153
27 C -0.092 4.092
28 C -0.129 4.129
29 H 0.058 0.942
30 H 0.041 0.959
31 H 0.088 0.912
32 H 0.083 0.917
33 H 0.040 0.960
34 H 0.078 0.922
35 H 0.095 0.905
36 H 0.025 0.975
37 H 0.017 0.983
38 H 0.266 0.734
39 H 0.075 0.925
40 H 0.086 0.914
41 H 0.074 0.926
42 H 0.062 0.938
43 H 0.190 0.810
44 H 0.072 0.928
45 H 0.094 0.906
46 H 0.102 0.898
47 H 0.142 0.858
48 H 0.154 0.846
49 H 0.140 0.860
50 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.621 6.924 -12.798 14.565
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.330 6.330
3 C -0.021 4.021
4 C -0.008 4.008
5 N -0.322 5.322
6 C 0.141 3.859
7 C -0.583 4.583
8 H 0.072 0.928
9 C -0.181 4.181
10 N -0.561 5.561
11 Si 0.783 3.217
12 H -0.200 1.200
13 H -0.207 1.207
14 H -0.192 1.192
15 C 0.302 3.698
16 O -0.477 6.477
17 C -0.153 4.153
18 C -0.047 4.047
19 C -0.198 4.198
20 C -0.071 4.071
21 N -0.173 5.173
22 C -0.066 4.066
23 C -0.030 4.030
24 C -0.155 4.155
25 C -0.123 4.123
26 C -0.172 4.172
27 C -0.111 4.111
28 C -0.134 4.134
29 H 0.077 0.923
30 H 0.060 0.940
31 H 0.107 0.893
32 H 0.100 0.900
33 H 0.058 0.942
34 H 0.097 0.903
35 H 0.113 0.887
36 H 0.043 0.957
37 H 0.035 0.965
38 H 0.075 0.925
39 H 0.094 0.906
40 H 0.105 0.895
41 H 0.092 0.908
42 H 0.081 0.919
43 H 0.207 0.793
44 H 0.091 0.909
45 H 0.113 0.887
46 H 0.120 0.880
47 H 0.160 0.840
48 H 0.171 0.829
49 H 0.158 0.842
50 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -0.259 7.077 -12.931 14.743
hybrid contribution 0.465 -0.504 0.626 0.929
sum 0.206 6.573 -12.305 13.951
Atomic orbital electron populations
1.22872 0.80018 1.03311 1.00635 1.88008 1.21171 1.28360 1.95476
1.22935 0.93675 0.84702 1.00838 1.21495 0.92891 0.99422 0.87034
1.48174 1.63861 1.08905 1.11308 1.18969 0.95769 0.74388 0.96725
1.21714 0.97979 0.92519 1.46112 0.92762 1.25690 1.01117 0.96344
0.94922 1.70059 1.36237 1.01428 1.48361 0.85565 0.79997 0.77763
0.78424 1.19978 1.20745 1.19175 1.20920 0.76215 0.86462 0.86194
1.90543 1.56805 1.15144 1.85168 1.21464 1.02803 0.99179 0.91882
1.19423 1.01391 0.94991 0.88918 1.20335 0.92600 1.09548 0.97339
1.21986 0.98750 0.99187 0.87133 1.43999 1.05241 1.50889 1.17182
1.22198 0.84545 1.02513 0.97388 1.18593 0.84331 1.02871 0.97235
1.20329 0.96051 1.03170 0.95946 1.21162 0.92073 0.99355 0.99741
1.20917 1.00902 1.01142 0.94269 1.20474 0.92928 0.99364 0.98338
1.19421 0.93827 1.04347 0.95804 0.92299 0.94003 0.89347 0.89952
0.94204 0.90317 0.88718 0.95710 0.96497 0.92528 0.90623 0.89543
0.90769 0.91938 0.79286 0.90937 0.88709 0.87953 0.84037 0.82882
0.84213 0.86771
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.75 11.01 113.37 1.25 1.99 16
2 O -0.41 -15.19 9.53 -148.98 -1.42 -16.61 16
3 C 0.06 1.87 6.28 71.98 0.45 2.32 16
4 C 0.11 4.40 5.81 86.38 0.50 4.90 16
5 N -0.59 -26.51 2.42 -826.16 -2.00 -28.51 16
6 C 0.26 13.49 4.78 85.63 0.41 13.89 16
7 C -0.54 -29.52 9.28 25.60 0.24 -29.28 16
8 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16
9 C 0.02 1.05 5.46 84.66 0.46 1.51 16
10 N -0.92 -53.19 13.29 21.45 0.28 -52.90 16
11 Si 0.96 42.83 29.54 68.60 2.03 44.86 16
12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
13 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16
14 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16
15 C 0.51 22.31 7.67 87.65 0.67 22.99 16
16 O -0.59 -26.69 15.56 -3.04 -0.05 -26.73 16
17 C -0.11 -4.55 4.23 29.85 0.13 -4.42 16
18 C -0.01 -0.30 5.03 29.85 0.15 -0.15 16
19 C -0.19 -6.23 5.57 -18.63 -0.10 -6.33 16
20 C 0.05 1.51 11.20 83.00 0.93 2.44 16
21 N -0.49 -12.25 3.18 -539.27 -1.71 -13.96 16
22 C 0.07 1.10 11.03 127.77 1.41 2.51 16
23 C 0.08 2.17 6.81 39.03 0.27 2.43 16
24 C -0.13 -3.13 9.97 22.37 0.22 -2.90 16
25 C -0.10 -2.27 10.01 22.30 0.22 -2.05 16
26 C -0.15 -3.81 9.97 22.03 0.22 -3.59 16
27 C -0.09 -2.82 10.05 22.23 0.22 -2.59 16
28 C -0.13 -4.23 6.35 -20.20 -0.13 -4.36 16
29 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16
30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16
31 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16
32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16
33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16
34 H 0.08 3.08 8.07 -2.39 -0.02 3.06 16
35 H 0.09 3.43 7.42 -2.39 -0.02 3.41 16
36 H 0.02 1.39 7.12 -2.39 -0.02 1.37 16
37 H 0.02 0.93 6.44 -2.38 -0.02 0.91 16
38 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16
39 H 0.08 3.18 7.40 -2.39 -0.02 3.16 16
40 H 0.09 3.71 8.00 -2.39 -0.02 3.69 16
41 H 0.07 2.47 8.10 -2.38 -0.02 2.45 16
42 H 0.06 2.21 8.10 -2.38 -0.02 2.19 16
43 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16
44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
45 H 0.09 1.07 8.10 -2.38 -0.02 1.05 16
46 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16
47 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16
48 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16
49 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16
50 H 0.11 3.43 8.06 -2.91 -0.02 3.41 16
Total: -1.00 -71.08 417.51 5.56 -65.51
By element:
Atomic # 1 Polarization: 28.14 SS G_CDS: 0.91 Total: 29.05 kcal
Atomic # 6 Polarization: -8.23 SS G_CDS: 7.52 Total: -0.71 kcal
Atomic # 7 Polarization: -91.94 SS G_CDS: -3.43 Total: -95.37 kcal
Atomic # 8 Polarization: -41.88 SS G_CDS: -1.47 Total: -43.34 kcal
Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal
Total: -71.08 5.56 -65.51 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000120585701.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.872 kcal
(2) G-P(sol) polarization free energy of solvation -71.076 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.204 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.639 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds