Wall clock time and date at job start Wed Apr 1 2020 03:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21278 * 119.99830 * 2 1 4 4 N 1.34773 * 120.00365 * 179.97438 * 2 1 3 5 5 C 1.46930 * 120.62861 * 354.55300 * 4 2 1 6 6 C 1.53191 * 108.77361 * 233.62358 * 5 4 2 7 7 C 1.53037 * 109.31638 * 305.36773 * 6 5 4 8 8 C 1.50697 * 109.45982 * 181.38426 * 7 6 5 9 9 O 1.21282 * 120.00150 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00082 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99947 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47394 * 35.00580 * 11 10 8 13 13 C 1.53008 * 109.46889 * 154.99678 * 11 10 8 14 14 C 1.50697 * 109.47181 * 295.00038 * 13 11 10 15 15 H 1.08001 * 120.00343 * 0.02562 * 14 13 11 16 16 C 1.37883 * 119.99848 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99723 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00053 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46836 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.46941 * 120.00244 * 18 16 14 21 21 H 1.48493 * 109.46913 * 240.00273 * 18 16 14 22 22 C 1.50693 * 109.47467 * 275.00134 * 11 10 8 23 23 C 1.38245 * 119.99473 * 319.72724 * 22 11 10 24 24 C 1.38235 * 119.99363 * 179.78922 * 23 22 11 25 25 C 1.38234 * 120.00292 * 0.44114 * 24 23 22 26 26 C 1.38235 * 119.99919 * 359.81227 * 25 24 23 27 27 C 1.38224 * 120.00495 * 140.00168 * 22 11 10 28 28 C 1.53036 * 109.53957 * 61.36306 * 7 6 5 29 29 C 1.46931 * 120.63441 * 174.57016 * 4 2 1 30 30 H 1.09006 * 109.47004 * 274.66504 * 1 2 3 31 31 H 1.08992 * 109.47051 * 34.66821 * 1 2 3 32 32 H 1.08999 * 109.46681 * 154.67004 * 1 2 3 33 33 H 1.09001 * 109.58639 * 113.84128 * 5 4 2 34 34 H 1.08995 * 109.58460 * 353.41696 * 5 4 2 35 35 H 1.09005 * 109.49683 * 185.41133 * 6 5 4 36 36 H 1.09000 * 109.52042 * 65.33468 * 6 5 4 37 37 H 1.09001 * 109.45948 * 301.34459 * 7 6 5 38 38 H 0.97001 * 119.99576 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46278 * 54.99897 * 13 11 10 40 40 H 1.08997 * 109.47089 * 174.99917 * 13 11 10 41 41 H 0.96999 * 120.00181 * 179.97438 * 17 16 14 42 42 H 1.07993 * 120.00092 * 359.97438 * 23 22 11 43 43 H 1.08002 * 119.99481 * 180.27826 * 24 23 22 44 44 H 1.07999 * 120.00029 * 179.83715 * 25 24 23 45 45 H 1.08004 * 119.99985 * 180.02562 * 26 25 24 46 46 H 1.08004 * 119.99866 * 359.97438 * 27 22 11 47 47 H 1.09005 * 109.49682 * 58.58967 * 28 7 6 48 48 H 1.08999 * 109.49823 * 178.68277 * 28 7 6 49 49 H 1.08996 * 109.58537 * 246.16199 * 29 4 2 50 50 H 1.09004 * 109.58050 * 6.44507 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4653 -2.4447 0.1211 6 6 2.0692 -3.2403 1.2826 7 6 3.5778 -3.3827 1.0685 8 6 4.1700 -4.1940 2.1919 9 8 3.4561 -4.6162 3.0768 10 7 5.4930 -4.4504 2.2134 11 6 6.0688 -5.2386 3.3058 12 1 5.3577 -6.0047 3.6150 13 6 7.3606 -5.9050 2.8280 14 6 7.0406 -6.9010 1.7433 15 1 6.0182 -7.0441 1.4261 16 6 8.0533 -7.6288 1.1552 17 7 9.2983 -7.4541 1.5412 18 14 7.6568 -8.8629 -0.1899 19 1 6.1929 -8.8701 -0.4392 20 1 8.3688 -8.4825 -1.4362 21 1 8.0936 -10.2167 0.2361 22 6 6.3717 -4.3342 4.4724 23 6 6.9042 -3.0775 4.2526 24 6 7.1781 -2.2461 5.3225 25 6 6.9280 -2.6749 6.6127 26 6 6.4005 -3.9335 6.8327 27 6 6.1226 -4.7632 5.7626 28 6 4.2246 -1.9959 1.0452 29 6 3.6453 -1.1862 -0.1191 30 1 -0.3633 0.0836 1.0243 31 1 -0.3633 0.8452 -0.5845 32 1 -0.3632 -0.9289 -0.4397 33 1 1.5711 -3.0115 -0.8039 34 1 0.4101 -2.2553 0.3174 35 1 1.6124 -4.2292 1.3225 36 1 1.8826 -2.7154 2.2195 37 1 3.7640 -3.8862 0.1198 38 1 6.0639 -4.1129 1.5054 39 1 8.0375 -5.1458 2.4361 40 1 7.8353 -6.4183 3.6642 41 1 10.0107 -7.9664 1.1277 42 1 7.1034 -2.7441 3.2449 43 1 7.5899 -1.2626 5.1506 44 1 7.1445 -2.0264 7.4487 45 1 6.2047 -4.2684 7.8407 46 1 5.7103 -5.7465 5.9345 47 1 4.0178 -1.4822 1.9841 48 1 5.3019 -2.0991 0.9160 49 1 3.9287 -1.6503 -1.0637 50 1 4.0280 -0.1662 -0.0837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153197977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:46 Heat of formation + Delta-G solvation = -63.314106 kcal Electronic energy + Delta-G solvation = -30596.630163 eV Core-core repulsion = 26587.775267 eV Total energy + Delta-G solvation = -4008.854896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55876 -39.61823 -38.60159 -37.06475 -35.21997 -33.41893 -32.72236 -31.60689 -31.07192 -30.47139 -29.61062 -28.77608 -26.13183 -24.77203 -23.37033 -22.34950 -22.05279 -21.79616 -20.22380 -19.68986 -19.09020 -17.55818 -16.95789 -16.47738 -16.19298 -16.05424 -15.67311 -15.50791 -15.00972 -14.66414 -14.56893 -14.23745 -14.07450 -13.99732 -13.48685 -13.46696 -13.21184 -13.00897 -12.95356 -12.63953 -12.48350 -12.31937 -12.19917 -12.13793 -11.91029 -11.58597 -11.43932 -11.16432 -11.00396 -10.84834 -10.78501 -10.75823 -10.61639 -10.48487 -9.99413 -9.81451 -9.41179 -9.28489 -8.86252 -8.56800 -8.49327 -8.44166 -8.19637 -6.12975 -4.16654 1.76629 1.78960 2.40725 2.77779 3.07020 3.22611 3.31569 3.34789 3.67045 4.21710 4.32661 4.36058 4.45372 4.72775 4.79982 4.84701 4.91340 5.01922 5.07962 5.16114 5.23753 5.25213 5.25770 5.28933 5.35870 5.43649 5.50915 5.55535 5.56337 5.61765 5.69490 5.83432 5.89230 5.92802 5.99682 6.15301 6.17745 6.30213 6.34367 6.42294 6.55618 6.83437 6.84017 6.88972 7.09051 7.17127 7.39075 7.45943 7.59002 7.83634 7.94861 8.09593 8.22144 8.73105 8.89490 9.48582 10.97561 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008248 B = 0.003608 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3393.869717 B = 7759.676766 C =10080.073802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.513 3.487 3 O -0.551 6.551 4 N -0.613 5.613 5 C 0.104 3.896 6 C -0.113 4.113 7 C -0.108 4.108 8 C 0.515 3.485 9 O -0.550 6.550 10 N -0.698 5.698 11 C 0.184 3.816 12 H 0.086 0.914 13 C 0.024 3.976 14 C -0.520 4.520 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.070 4.070 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.109 4.109 28 C -0.124 4.124 29 C 0.112 3.888 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.400 0.600 39 H 0.024 0.976 40 H 0.034 0.966 41 H 0.261 0.739 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.137 11.679 -0.728 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.302 3.698 3 O -0.429 6.429 4 N -0.347 5.347 5 C -0.018 4.018 6 C -0.151 4.151 7 C -0.130 4.130 8 C 0.301 3.699 9 O -0.428 6.428 10 N -0.347 5.347 11 C 0.080 3.920 12 H 0.104 0.896 13 C -0.014 4.014 14 C -0.558 4.558 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.072 4.072 23 C -0.126 4.126 24 C -0.143 4.143 25 C -0.153 4.153 26 C -0.141 4.141 27 C -0.127 4.127 28 C -0.163 4.163 29 C -0.011 4.011 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.235 0.765 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.138 0.862 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.090 0.910 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.136 11.857 -0.137 17.696 hybrid contribution 0.336 -0.783 -1.024 1.333 sum -12.801 11.074 -1.161 16.965 Atomic orbital electron populations 1.21970 0.91952 1.04698 1.04954 1.20808 0.90638 0.83043 0.75317 1.90707 1.70733 1.31137 1.50346 1.48220 1.07541 1.06303 1.72674 1.21908 0.96749 0.84000 0.99187 1.21709 0.93711 1.01321 0.98405 1.21319 0.96393 0.96162 0.99126 1.20386 0.82621 0.80259 0.86650 1.90655 1.60230 1.52963 1.38975 1.45986 1.07617 1.54005 1.27093 1.20237 0.98540 0.90187 0.83066 0.89604 1.19392 0.89505 0.95481 0.96977 1.21162 0.93593 1.21605 1.19466 0.92357 1.24996 0.95016 0.97056 0.97097 1.69966 0.99338 1.41326 1.42355 0.86546 0.78472 0.81310 0.81751 1.19746 1.21023 1.20972 1.20539 0.96249 0.94990 0.95378 1.20895 0.99022 0.94002 0.98669 1.21047 1.00855 0.99447 0.92931 1.20996 1.01150 0.96489 0.96678 1.21042 1.00013 0.94499 0.98520 1.21014 0.99843 0.99727 0.92159 1.21898 1.00526 0.94190 0.99652 1.21617 0.79210 1.02222 0.98020 0.88788 0.88954 0.89901 0.90919 0.89121 0.89617 0.90730 0.88285 0.76523 0.95762 0.94822 0.92893 0.86622 0.86743 0.86854 0.86631 0.86236 0.90898 0.89871 0.91039 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 9.47 36.01 0.34 -0.84 16 2 C 0.51 5.62 7.80 -10.99 -0.09 5.54 16 3 O -0.55 -8.36 16.52 5.56 0.09 -8.27 16 4 N -0.61 -6.01 2.97 -172.77 -0.51 -6.52 16 5 C 0.10 0.80 6.15 -3.71 -0.02 0.78 16 6 C -0.11 -1.18 4.65 -26.61 -0.12 -1.30 16 7 C -0.11 -1.28 2.49 -91.74 -0.23 -1.50 16 8 C 0.52 8.38 7.11 -10.98 -0.08 8.30 16 9 O -0.55 -10.85 15.64 5.56 0.09 -10.76 16 10 N -0.70 -11.83 3.93 -54.93 -0.22 -12.05 16 11 C 0.18 3.63 2.11 -69.08 -0.15 3.48 16 12 H 0.09 1.87 7.44 -51.93 -0.39 1.48 16 13 C 0.02 0.56 4.49 -27.88 -0.13 0.43 16 14 C -0.52 -13.40 8.84 -34.44 -0.30 -13.71 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 18 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.07 -1.28 4.91 -104.63 -0.51 -1.80 16 23 C -0.11 -1.78 9.32 -39.58 -0.37 -2.15 16 24 C -0.12 -1.85 10.05 -39.58 -0.40 -2.24 16 25 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 27 C -0.11 -1.88 9.67 -39.59 -0.38 -2.26 16 28 C -0.12 -1.32 5.27 -26.61 -0.14 -1.46 16 29 C 0.11 1.12 6.44 -3.71 -0.02 1.09 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.37 6.20 -51.93 -0.32 0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.50 5.62 -51.93 -0.29 0.21 16 35 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.40 6.20 8.00 -40.82 -0.33 5.88 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.12 1.77 7.73 -52.49 -0.41 1.37 16 43 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 44 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 46 H 0.12 1.98 8.04 -52.48 -0.42 1.56 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.08 0.81 7.53 -51.93 -0.39 0.42 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 1.07 7.00 -51.93 -0.36 0.71 16 LS Contribution 406.63 15.07 6.13 6.13 Total: -1.00 -33.40 406.63 -10.14 -43.55 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.94 Total: 7.50 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -3.49 Total: -10.68 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.01 Total: -42.99 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.18 Total: -19.03 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.40 -10.14 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153197977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.768 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds