Wall clock time and date at job start Wed Apr 1 2020 03:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21278 * 119.99830 * 2 1 4 4 N 1.34773 * 120.00365 * 179.97438 * 2 1 3 5 5 C 1.46930 * 120.62861 * 354.55300 * 4 2 1 6 6 C 1.53191 * 108.77361 * 233.62358 * 5 4 2 7 7 C 1.53037 * 109.31638 * 305.36773 * 6 5 4 8 8 C 1.50697 * 109.45982 * 181.38426 * 7 6 5 9 9 O 1.21282 * 120.00150 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00082 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99947 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47394 * 35.00580 * 11 10 8 13 13 C 1.53008 * 109.46889 * 154.99678 * 11 10 8 14 14 C 1.50697 * 109.47181 * 295.00038 * 13 11 10 15 15 H 1.08001 * 120.00343 * 0.02562 * 14 13 11 16 16 C 1.37883 * 119.99848 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99723 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00053 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46836 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.46941 * 120.00244 * 18 16 14 21 21 H 1.48493 * 109.46913 * 240.00273 * 18 16 14 22 22 C 1.50693 * 109.47467 * 275.00134 * 11 10 8 23 23 C 1.38245 * 119.99473 * 319.72724 * 22 11 10 24 24 C 1.38235 * 119.99363 * 179.78922 * 23 22 11 25 25 C 1.38234 * 120.00292 * 0.44114 * 24 23 22 26 26 C 1.38235 * 119.99919 * 359.81227 * 25 24 23 27 27 C 1.38224 * 120.00495 * 140.00168 * 22 11 10 28 28 C 1.53036 * 109.53957 * 61.36306 * 7 6 5 29 29 C 1.46931 * 120.63441 * 174.57016 * 4 2 1 30 30 H 1.09006 * 109.47004 * 274.66504 * 1 2 3 31 31 H 1.08992 * 109.47051 * 34.66821 * 1 2 3 32 32 H 1.08999 * 109.46681 * 154.67004 * 1 2 3 33 33 H 1.09001 * 109.58639 * 113.84128 * 5 4 2 34 34 H 1.08995 * 109.58460 * 353.41696 * 5 4 2 35 35 H 1.09005 * 109.49683 * 185.41133 * 6 5 4 36 36 H 1.09000 * 109.52042 * 65.33468 * 6 5 4 37 37 H 1.09001 * 109.45948 * 301.34459 * 7 6 5 38 38 H 0.97001 * 119.99576 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46278 * 54.99897 * 13 11 10 40 40 H 1.08997 * 109.47089 * 174.99917 * 13 11 10 41 41 H 0.96999 * 120.00181 * 179.97438 * 17 16 14 42 42 H 1.07993 * 120.00092 * 359.97438 * 23 22 11 43 43 H 1.08002 * 119.99481 * 180.27826 * 24 23 22 44 44 H 1.07999 * 120.00029 * 179.83715 * 25 24 23 45 45 H 1.08004 * 119.99985 * 180.02562 * 26 25 24 46 46 H 1.08004 * 119.99866 * 359.97438 * 27 22 11 47 47 H 1.09005 * 109.49682 * 58.58967 * 28 7 6 48 48 H 1.08999 * 109.49823 * 178.68277 * 28 7 6 49 49 H 1.08996 * 109.58537 * 246.16199 * 29 4 2 50 50 H 1.09004 * 109.58050 * 6.44507 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4653 -2.4447 0.1211 6 6 2.0692 -3.2403 1.2826 7 6 3.5778 -3.3827 1.0685 8 6 4.1700 -4.1940 2.1919 9 8 3.4561 -4.6162 3.0768 10 7 5.4930 -4.4504 2.2134 11 6 6.0688 -5.2386 3.3058 12 1 5.3577 -6.0047 3.6150 13 6 7.3606 -5.9050 2.8280 14 6 7.0406 -6.9010 1.7433 15 1 6.0182 -7.0441 1.4261 16 6 8.0533 -7.6288 1.1552 17 7 9.2983 -7.4541 1.5412 18 14 7.6568 -8.8629 -0.1899 19 1 6.1929 -8.8701 -0.4392 20 1 8.3688 -8.4825 -1.4362 21 1 8.0936 -10.2167 0.2361 22 6 6.3717 -4.3342 4.4724 23 6 6.9042 -3.0775 4.2526 24 6 7.1781 -2.2461 5.3225 25 6 6.9280 -2.6749 6.6127 26 6 6.4005 -3.9335 6.8327 27 6 6.1226 -4.7632 5.7626 28 6 4.2246 -1.9959 1.0452 29 6 3.6453 -1.1862 -0.1191 30 1 -0.3633 0.0836 1.0243 31 1 -0.3633 0.8452 -0.5845 32 1 -0.3632 -0.9289 -0.4397 33 1 1.5711 -3.0115 -0.8039 34 1 0.4101 -2.2553 0.3174 35 1 1.6124 -4.2292 1.3225 36 1 1.8826 -2.7154 2.2195 37 1 3.7640 -3.8862 0.1198 38 1 6.0639 -4.1129 1.5054 39 1 8.0375 -5.1458 2.4361 40 1 7.8353 -6.4183 3.6642 41 1 10.0107 -7.9664 1.1277 42 1 7.1034 -2.7441 3.2449 43 1 7.5899 -1.2626 5.1506 44 1 7.1445 -2.0264 7.4487 45 1 6.2047 -4.2684 7.8407 46 1 5.7103 -5.7465 5.9345 47 1 4.0178 -1.4822 1.9841 48 1 5.3019 -2.0991 0.9160 49 1 3.9287 -1.6503 -1.0637 50 1 4.0280 -0.1662 -0.0837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153197977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:45 Heat of formation + Delta-G solvation = -82.881809 kcal Electronic energy + Delta-G solvation = -30597.478682 eV Core-core repulsion = 26587.775267 eV Total energy + Delta-G solvation = -4009.703415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57440 -40.78671 -39.81907 -38.07124 -36.76927 -34.76745 -34.28692 -32.41878 -32.37078 -31.70823 -30.60103 -30.19051 -27.29917 -26.26558 -24.20517 -23.80155 -23.46554 -22.85064 -21.49284 -21.00286 -19.93849 -18.77407 -18.38354 -17.75356 -17.66001 -16.95775 -16.83772 -16.49994 -16.41421 -16.25102 -15.77908 -15.44920 -15.03362 -14.89680 -14.78146 -14.45784 -14.29865 -14.21497 -14.18923 -13.88222 -13.69231 -13.57558 -13.40366 -13.08992 -12.94401 -12.91459 -12.76025 -12.61765 -12.47402 -12.23336 -12.14238 -11.89616 -11.78537 -11.66981 -11.58494 -11.30755 -10.85953 -10.74125 -10.55371 -9.95396 -9.77358 -9.69411 -9.52796 -8.19961 -6.30404 0.49549 0.53930 1.39402 1.42250 1.53330 1.60212 1.75248 2.05315 2.37276 2.40451 2.95894 3.14598 3.58468 3.62641 3.76639 3.89734 4.00113 4.01543 4.05755 4.18731 4.24297 4.29996 4.32329 4.39929 4.44028 4.50861 4.60998 4.64334 4.67767 4.73137 4.76714 4.78104 4.81589 4.84077 4.93385 5.09732 5.11322 5.15527 5.18220 5.27684 5.32395 5.43576 5.52698 5.59421 5.60776 5.62669 5.78126 5.90582 6.14729 6.19765 6.42035 6.73293 6.82821 7.15414 7.37705 7.39927 8.91006 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008248 B = 0.003608 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3393.869717 B = 7759.676766 C =10080.073802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.504 3.496 3 O -0.603 6.603 4 N -0.613 5.613 5 C 0.109 3.891 6 C -0.109 4.109 7 C -0.100 4.100 8 C 0.512 3.488 9 O -0.587 6.587 10 N -0.696 5.696 11 C 0.200 3.800 12 H 0.057 0.943 13 C 0.038 3.962 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.284 1.284 22 C -0.096 4.096 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.124 4.124 27 C -0.134 4.134 28 C -0.115 4.115 29 C 0.113 3.887 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.119 0.881 38 H 0.407 0.593 39 H 0.011 0.989 40 H 0.000 1.000 41 H 0.263 0.737 42 H 0.121 0.879 43 H 0.144 0.856 44 H 0.150 0.850 45 H 0.143 0.857 46 H 0.112 0.888 47 H 0.053 0.947 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.584 12.479 -1.684 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.295 3.705 3 O -0.485 6.485 4 N -0.346 5.346 5 C -0.013 4.013 6 C -0.148 4.148 7 C -0.121 4.121 8 C 0.300 3.700 9 O -0.468 6.468 10 N -0.345 5.345 11 C 0.095 3.905 12 H 0.075 0.925 13 C 0.001 3.999 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.783 3.217 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.211 1.211 22 C -0.097 4.097 23 C -0.139 4.139 24 C -0.144 4.144 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.153 4.153 28 C -0.153 4.153 29 C -0.010 4.010 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.243 0.757 39 H 0.029 0.971 40 H 0.018 0.982 41 H 0.072 0.928 42 H 0.139 0.861 43 H 0.162 0.838 44 H 0.167 0.833 45 H 0.161 0.839 46 H 0.130 0.870 47 H 0.072 0.928 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.599 12.644 -1.108 19.345 hybrid contribution 0.817 -1.033 -0.615 1.453 sum -13.783 11.611 -1.723 18.104 Atomic orbital electron populations 1.22006 0.88477 1.06419 1.06011 1.21619 0.92371 0.82410 0.74124 1.90682 1.72069 1.32924 1.52800 1.48362 1.07502 1.06949 1.71797 1.22058 0.97717 0.82685 0.98793 1.21682 0.92703 1.01522 0.98903 1.21356 0.97167 0.95875 0.97707 1.21199 0.81804 0.79802 0.87230 1.90632 1.60886 1.54541 1.40758 1.45906 1.08301 1.53622 1.26648 1.19691 0.95814 0.90411 0.84589 0.92483 1.19127 0.90917 0.94686 0.95190 1.21425 0.93424 1.21926 1.19723 0.92562 1.25807 0.94808 0.98914 0.99387 1.70083 1.00317 1.42540 1.43794 0.85503 0.78576 0.78577 0.79009 1.18934 1.20152 1.21055 1.20458 0.98414 0.95790 0.95045 1.21057 0.99278 0.93688 0.99844 1.21435 0.99956 1.00311 0.92671 1.21457 0.99394 0.96373 0.97612 1.21382 0.99159 0.94572 0.99051 1.21182 1.01033 1.00246 0.92829 1.21807 1.01032 0.93299 0.99179 1.21580 0.79731 1.01270 0.98373 0.87693 0.88573 0.87092 0.88659 0.86285 0.89817 0.92698 0.86282 0.75689 0.97065 0.98162 0.92774 0.86107 0.83816 0.83259 0.83906 0.86953 0.92844 0.89138 0.89006 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 9.47 71.24 0.67 -1.13 16 2 C 0.50 10.32 7.80 87.66 0.68 11.00 16 3 O -0.60 -18.27 16.52 -3.02 -0.05 -18.32 16 4 N -0.61 -10.80 2.97 -818.90 -2.43 -13.24 16 5 C 0.11 1.34 6.15 86.36 0.53 1.88 16 6 C -0.11 -2.13 4.65 30.67 0.14 -1.99 16 7 C -0.10 -2.25 2.49 -11.52 -0.03 -2.28 16 8 C 0.51 16.93 7.11 87.65 0.62 17.55 16 9 O -0.59 -23.95 15.64 -3.04 -0.05 -23.99 16 10 N -0.70 -24.31 3.93 -446.09 -1.75 -26.06 16 11 C 0.20 8.35 2.11 44.25 0.09 8.44 16 12 H 0.06 2.67 7.44 -2.39 -0.02 2.66 16 13 C 0.04 1.89 4.49 29.85 0.13 2.02 16 14 C -0.53 -27.90 8.84 25.60 0.23 -27.67 16 15 H 0.06 2.95 7.74 -2.91 -0.02 2.92 16 16 C 0.01 0.51 5.46 84.66 0.46 0.97 16 17 N -0.93 -53.50 13.29 21.45 0.28 -53.21 16 18 Si 0.96 42.32 29.54 68.60 2.03 44.34 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 C -0.10 -3.64 4.91 -19.87 -0.10 -3.74 16 23 C -0.12 -4.01 9.32 22.27 0.21 -3.80 16 24 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 25 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 26 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 27 C -0.13 -4.81 9.67 22.27 0.22 -4.59 16 28 C -0.11 -2.36 5.27 30.67 0.16 -2.20 16 29 C 0.11 2.12 6.44 86.36 0.56 2.67 16 30 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 0.53 6.20 -2.39 -0.01 0.51 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.12 0.83 5.62 -2.39 -0.01 0.82 16 35 H 0.08 1.69 8.07 -2.38 -0.02 1.68 16 36 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 37 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.41 12.88 8.00 -92.71 -0.74 12.13 16 39 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.12 3.75 7.73 -2.91 -0.02 3.73 16 43 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 44 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 45 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 46 H 0.11 4.01 8.04 -2.91 -0.02 3.99 16 47 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 48 H 0.09 1.71 7.53 -2.39 -0.02 1.70 16 49 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.08 1.78 7.00 -2.39 -0.02 1.77 16 Total: -1.00 -76.15 406.63 3.48 -72.67 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.19 Total: 30.56 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 5.26 Total: -12.74 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -3.90 Total: -92.52 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.10 Total: -42.31 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -76.15 3.48 -72.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153197977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.217 kcal (2) G-P(sol) polarization free energy of solvation -76.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds