Wall clock time and date at job start Wed Apr 1 2020 03:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 119.99571 * 2 1 4 4 N 1.34773 * 120.00083 * 180.02562 * 2 1 3 5 5 C 1.46924 * 120.62807 * 174.55169 * 4 2 1 6 6 C 1.53191 * 108.77958 * 126.42897 * 5 4 2 7 7 C 1.53040 * 109.31084 * 54.63302 * 6 5 4 8 8 C 1.53042 * 109.53718 * 298.63745 * 7 6 5 9 9 H 1.08999 * 109.50036 * 301.37984 * 8 7 6 10 10 C 1.50700 * 109.49660 * 181.31690 * 8 7 6 11 11 O 1.21285 * 120.00280 * 0.06703 * 10 8 7 12 12 N 1.34779 * 120.00237 * 180.02562 * 10 8 7 13 13 C 1.46500 * 120.00442 * 180.02562 * 12 10 8 14 14 H 1.08997 * 109.46757 * 34.99588 * 13 12 10 15 15 C 1.53000 * 109.47247 * 155.00022 * 13 12 10 16 16 C 1.50697 * 109.46928 * 294.99852 * 15 13 12 17 17 H 1.08001 * 120.00253 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99495 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00582 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99495 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46926 * 90.00756 * 20 18 16 22 22 H 1.48505 * 109.46620 * 210.00202 * 20 18 16 23 23 H 1.48498 * 109.47377 * 330.00249 * 20 18 16 24 24 C 1.50700 * 109.46871 * 275.00082 * 13 12 10 25 25 C 1.38240 * 120.00228 * 319.72506 * 24 13 12 26 26 C 1.38227 * 119.99940 * 179.81247 * 25 24 13 27 27 C 1.38243 * 120.00222 * 0.41385 * 26 25 24 28 28 C 1.38230 * 119.99575 * 359.81904 * 27 26 25 29 29 C 1.38232 * 119.99923 * 139.99940 * 24 13 12 30 30 C 1.46932 * 120.60602 * 354.56350 * 4 2 1 31 31 H 1.08993 * 109.47000 * 274.66129 * 1 2 3 32 32 H 1.08994 * 109.47438 * 34.66617 * 1 2 3 33 33 H 1.09003 * 109.46453 * 154.66490 * 1 2 3 34 34 H 1.09004 * 109.59069 * 6.64239 * 5 4 2 35 35 H 1.09001 * 109.58594 * 246.21959 * 5 4 2 36 36 H 1.08999 * 109.49681 * 294.68714 * 6 5 4 37 37 H 1.08998 * 109.49950 * 174.58594 * 6 5 4 38 38 H 1.08996 * 109.46083 * 178.61424 * 7 6 5 39 39 H 1.08998 * 109.44740 * 58.64983 * 7 6 5 40 40 H 0.97006 * 119.99709 * 359.97438 * 12 10 8 41 41 H 1.08998 * 109.46771 * 55.00102 * 15 13 12 42 42 H 1.09003 * 109.46909 * 175.00114 * 15 13 12 43 43 H 0.96995 * 120.00458 * 179.97438 * 19 18 16 44 44 H 1.08003 * 119.99691 * 359.97438 * 25 24 13 45 45 H 1.08004 * 119.99936 * 180.20902 * 26 25 24 46 46 H 1.07997 * 120.00019 * 179.79131 * 27 26 25 47 47 H 1.08007 * 119.99650 * 179.97438 * 28 27 26 48 48 H 1.08001 * 119.99906 * 359.97438 * 29 24 13 49 49 H 1.09002 * 109.55492 * 113.76728 * 30 4 2 50 50 H 1.08993 * 109.61561 * 353.34354 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6451 -1.1860 -0.1206 6 6 4.2249 -1.9977 1.0421 7 6 3.5780 -3.3845 1.0633 8 6 2.0694 -3.2424 1.2782 9 1 1.8832 -2.7191 2.2160 10 6 1.4379 -4.6097 1.3312 11 8 2.1264 -5.6008 1.2104 12 7 0.1081 -4.7312 1.5137 13 6 -0.5058 -6.0603 1.5658 14 1 0.1789 -6.7580 2.0479 15 6 -1.8085 -5.9895 2.3651 16 6 -1.5004 -5.6362 3.7973 17 1 -0.4779 -5.4777 4.1065 18 6 -2.5243 -5.5145 4.7128 19 7 -3.7695 -5.7070 4.3363 20 14 -2.1423 -5.0773 6.4884 21 1 -2.1568 -3.6010 6.6487 22 1 -3.1661 -5.6819 7.3781 23 1 -0.8007 -5.6014 6.8497 24 6 -0.8007 -6.5326 0.1654 25 6 -1.2944 -5.6462 -0.7735 26 6 -1.5612 -6.0786 -2.0590 27 6 -1.3424 -7.3994 -2.4034 28 6 -0.8533 -8.2869 -1.4632 29 6 -0.5829 -7.8536 -0.1787 30 6 1.4647 -2.4445 0.1187 31 1 -0.3633 0.0835 1.0242 32 1 -0.3634 0.8452 -0.5845 33 1 -0.3632 -0.9289 -0.4398 34 1 4.0283 -0.1663 -0.0811 35 1 3.9283 -1.6485 -1.0661 36 1 4.0183 -1.4857 1.9819 37 1 5.3022 -2.1007 0.9124 38 1 4.0066 -3.9728 1.8747 39 1 3.7638 -3.8862 0.1136 40 1 -0.4425 -3.9385 1.6113 41 1 -2.4580 -5.2274 1.9344 42 1 -2.3098 -6.9567 2.3292 43 1 -4.4897 -5.6217 4.9804 44 1 -1.4691 -4.6152 -0.5032 45 1 -1.9437 -5.3852 -2.7934 46 1 -1.5541 -7.7379 -3.4069 47 1 -0.6828 -9.3189 -1.7322 48 1 -0.2010 -8.5471 0.5559 49 1 1.5696 -3.0095 -0.8076 50 1 0.4097 -2.2554 0.3163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153229519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:53 Heat of formation + Delta-G solvation = -63.173640 kcal Electronic energy + Delta-G solvation = -30986.234518 eV Core-core repulsion = 26977.385712 eV Total energy + Delta-G solvation = -4008.848805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.61398 -39.60588 -38.62812 -37.07541 -35.28653 -33.20192 -32.86305 -32.13367 -30.81304 -30.49073 -29.55279 -28.78562 -25.41033 -25.19088 -24.00079 -22.36556 -22.03587 -21.61102 -20.08557 -19.73185 -19.17184 -17.52090 -16.95411 -16.50381 -16.22168 -16.16893 -15.70882 -15.40582 -15.04693 -14.77357 -14.59042 -14.31760 -14.10551 -13.73932 -13.66830 -13.42140 -13.32535 -13.07888 -12.97350 -12.72222 -12.56101 -12.26190 -12.17396 -12.16750 -11.67822 -11.60031 -11.20393 -11.18086 -11.05600 -10.94099 -10.85113 -10.79399 -10.66159 -10.52905 -9.95654 -9.84430 -9.49830 -9.33281 -8.85850 -8.61916 -8.52963 -8.49935 -8.24695 -6.15065 -4.18922 1.71494 1.73817 2.43263 2.72822 3.02394 3.22203 3.30592 3.33971 3.59858 4.16579 4.34365 4.37796 4.43790 4.71915 4.77996 4.85170 5.00801 5.05356 5.13532 5.19567 5.20762 5.21393 5.25663 5.29307 5.32938 5.33733 5.47522 5.55317 5.63482 5.68154 5.76081 5.79007 5.83747 5.87745 6.04954 6.10524 6.22071 6.26938 6.29705 6.37385 6.51244 6.77819 6.79340 6.81631 7.03685 7.17432 7.33916 7.42328 7.54783 7.81257 7.97460 8.00960 8.19199 8.64074 8.86994 9.46678 10.95284 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007126 B = 0.004275 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3928.190411 B = 6548.050855 C = 8613.007337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.516 3.484 3 O -0.551 6.551 4 N -0.612 5.612 5 C 0.108 3.892 6 C -0.134 4.134 7 C -0.098 4.098 8 C -0.124 4.124 9 H 0.102 0.898 10 C 0.517 3.483 11 O -0.543 6.543 12 N -0.699 5.699 13 C 0.184 3.816 14 H 0.087 0.913 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.890 3.110 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.070 4.070 25 C -0.109 4.109 26 C -0.125 4.125 27 C -0.135 4.135 28 C -0.122 4.122 29 C -0.108 4.108 30 C 0.116 3.884 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.400 0.600 41 H 0.024 0.976 42 H 0.034 0.966 43 H 0.262 0.738 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.120 0.880 49 H 0.077 0.923 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.264 5.107 -12.010 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.305 3.695 3 O -0.429 6.429 4 N -0.346 5.346 5 C -0.014 4.014 6 C -0.173 4.173 7 C -0.136 4.136 8 C -0.146 4.146 9 H 0.120 0.880 10 C 0.302 3.698 11 O -0.420 6.420 12 N -0.348 5.348 13 C 0.079 3.921 14 H 0.105 0.895 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.072 4.072 25 C -0.127 4.127 26 C -0.143 4.143 27 C -0.153 4.153 28 C -0.140 4.140 29 C -0.127 4.127 30 C -0.007 4.007 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.234 0.766 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.131 0.869 47 H 0.134 0.866 48 H 0.138 0.862 49 H 0.095 0.905 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.873 4.950 -12.019 15.738 hybrid contribution -0.349 0.414 1.176 1.295 sum 8.524 5.364 -10.843 14.799 Atomic orbital electron populations 1.22015 0.91556 1.04948 1.05418 1.20863 0.90750 0.82849 0.74995 1.90696 1.70800 1.31032 1.50360 1.48152 1.07499 1.06006 1.72914 1.21641 0.79313 1.02107 0.98337 1.21948 1.00341 0.95978 0.98990 1.21315 0.92247 0.96327 1.03717 1.21720 0.97513 0.94573 1.00789 0.88002 1.20237 0.82632 0.90388 0.76574 1.90674 1.62081 1.39241 1.50045 1.46024 1.07082 1.09931 1.71743 1.20258 0.98103 0.83351 0.90341 0.89506 1.19390 0.89299 0.98640 0.93993 1.21115 0.93206 1.48036 0.93612 0.92427 1.24975 0.95029 0.95245 0.98764 1.69947 0.98903 1.49186 1.34902 0.86622 0.78201 0.78541 0.84834 1.20658 1.21186 1.19863 1.20532 0.96358 0.93753 0.96507 1.20876 0.99319 0.99514 0.93007 1.21040 1.00907 0.95907 0.96431 1.21001 1.01268 0.93914 0.99099 1.21051 1.00026 0.99248 0.93672 1.21023 0.99743 0.95664 0.96224 1.21749 0.96706 0.83936 0.98349 0.88332 0.88789 0.89737 0.88957 0.91401 0.91369 0.90344 0.90589 0.90989 0.76600 0.95731 0.94768 0.92818 0.86638 0.86740 0.86854 0.86620 0.86208 0.90470 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 9.47 36.01 0.34 -1.16 16 2 C 0.52 6.05 7.80 -10.98 -0.09 5.97 16 3 O -0.55 -8.53 16.52 5.56 0.09 -8.44 16 4 N -0.61 -6.39 2.97 -172.77 -0.51 -6.91 16 5 C 0.11 1.07 6.44 -3.71 -0.02 1.04 16 6 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 7 C -0.10 -1.09 4.46 -26.69 -0.12 -1.21 16 8 C -0.12 -1.44 2.67 -91.65 -0.25 -1.69 16 9 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 10 C 0.52 7.99 7.11 -10.98 -0.08 7.91 16 11 O -0.54 -10.33 15.64 5.55 0.09 -10.24 16 12 N -0.70 -11.07 3.95 -54.93 -0.22 -11.29 16 13 C 0.18 3.44 2.11 -69.08 -0.15 3.30 16 14 H 0.09 1.82 7.44 -51.93 -0.39 1.44 16 15 C 0.02 0.54 4.49 -27.88 -0.13 0.42 16 16 C -0.52 -13.15 8.84 -34.44 -0.30 -13.46 16 17 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -24.71 13.29 55.43 0.74 -23.98 16 20 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.07 -1.20 4.91 -104.62 -0.51 -1.71 16 25 C -0.11 -1.64 9.32 -39.58 -0.37 -2.01 16 26 C -0.12 -1.68 10.05 -39.58 -0.40 -2.07 16 27 C -0.13 -1.78 10.05 -39.58 -0.40 -2.17 16 28 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 29 C -0.11 -1.76 9.67 -39.58 -0.38 -2.15 16 30 C 0.12 1.13 5.29 -3.71 -0.02 1.11 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.56 6.19 -51.93 -0.32 0.24 16 34 H 0.09 1.00 7.00 -51.93 -0.36 0.64 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 40 H 0.40 5.66 8.15 -40.82 -0.33 5.33 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.12 1.55 7.73 -52.48 -0.41 1.15 16 45 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 46 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 47 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 48 H 0.12 1.89 8.04 -52.49 -0.42 1.47 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.09 0.77 5.23 -51.93 -0.27 0.50 16 LS Contribution 406.97 15.07 6.13 6.13 Total: -1.00 -32.23 406.97 -10.19 -42.42 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.96 Total: 6.80 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -3.52 Total: -9.90 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.01 Total: -42.17 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.18 Total: -18.68 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.23 -10.19 -42.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153229519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.757 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds