Wall clock time and date at job start Wed Apr 1 2020 03:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 119.99571 * 2 1 4 4 N 1.34773 * 120.00083 * 180.02562 * 2 1 3 5 5 C 1.46924 * 120.62807 * 174.55169 * 4 2 1 6 6 C 1.53191 * 108.77958 * 126.42897 * 5 4 2 7 7 C 1.53040 * 109.31084 * 54.63302 * 6 5 4 8 8 C 1.53042 * 109.53718 * 298.63745 * 7 6 5 9 9 H 1.08999 * 109.50036 * 301.37984 * 8 7 6 10 10 C 1.50700 * 109.49660 * 181.31690 * 8 7 6 11 11 O 1.21285 * 120.00280 * 0.06703 * 10 8 7 12 12 N 1.34779 * 120.00237 * 180.02562 * 10 8 7 13 13 C 1.46500 * 120.00442 * 180.02562 * 12 10 8 14 14 H 1.08997 * 109.46757 * 34.99588 * 13 12 10 15 15 C 1.53000 * 109.47247 * 155.00022 * 13 12 10 16 16 C 1.50697 * 109.46928 * 294.99852 * 15 13 12 17 17 H 1.08001 * 120.00253 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99495 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00582 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99495 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46926 * 90.00756 * 20 18 16 22 22 H 1.48505 * 109.46620 * 210.00202 * 20 18 16 23 23 H 1.48498 * 109.47377 * 330.00249 * 20 18 16 24 24 C 1.50700 * 109.46871 * 275.00082 * 13 12 10 25 25 C 1.38240 * 120.00228 * 319.72506 * 24 13 12 26 26 C 1.38227 * 119.99940 * 179.81247 * 25 24 13 27 27 C 1.38243 * 120.00222 * 0.41385 * 26 25 24 28 28 C 1.38230 * 119.99575 * 359.81904 * 27 26 25 29 29 C 1.38232 * 119.99923 * 139.99940 * 24 13 12 30 30 C 1.46932 * 120.60602 * 354.56350 * 4 2 1 31 31 H 1.08993 * 109.47000 * 274.66129 * 1 2 3 32 32 H 1.08994 * 109.47438 * 34.66617 * 1 2 3 33 33 H 1.09003 * 109.46453 * 154.66490 * 1 2 3 34 34 H 1.09004 * 109.59069 * 6.64239 * 5 4 2 35 35 H 1.09001 * 109.58594 * 246.21959 * 5 4 2 36 36 H 1.08999 * 109.49681 * 294.68714 * 6 5 4 37 37 H 1.08998 * 109.49950 * 174.58594 * 6 5 4 38 38 H 1.08996 * 109.46083 * 178.61424 * 7 6 5 39 39 H 1.08998 * 109.44740 * 58.64983 * 7 6 5 40 40 H 0.97006 * 119.99709 * 359.97438 * 12 10 8 41 41 H 1.08998 * 109.46771 * 55.00102 * 15 13 12 42 42 H 1.09003 * 109.46909 * 175.00114 * 15 13 12 43 43 H 0.96995 * 120.00458 * 179.97438 * 19 18 16 44 44 H 1.08003 * 119.99691 * 359.97438 * 25 24 13 45 45 H 1.08004 * 119.99936 * 180.20902 * 26 25 24 46 46 H 1.07997 * 120.00019 * 179.79131 * 27 26 25 47 47 H 1.08007 * 119.99650 * 179.97438 * 28 27 26 48 48 H 1.08001 * 119.99906 * 359.97438 * 29 24 13 49 49 H 1.09002 * 109.55492 * 113.76728 * 30 4 2 50 50 H 1.08993 * 109.61561 * 353.34354 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6451 -1.1860 -0.1206 6 6 4.2249 -1.9977 1.0421 7 6 3.5780 -3.3845 1.0633 8 6 2.0694 -3.2424 1.2782 9 1 1.8832 -2.7191 2.2160 10 6 1.4379 -4.6097 1.3312 11 8 2.1264 -5.6008 1.2104 12 7 0.1081 -4.7312 1.5137 13 6 -0.5058 -6.0603 1.5658 14 1 0.1789 -6.7580 2.0479 15 6 -1.8085 -5.9895 2.3651 16 6 -1.5004 -5.6362 3.7973 17 1 -0.4779 -5.4777 4.1065 18 6 -2.5243 -5.5145 4.7128 19 7 -3.7695 -5.7070 4.3363 20 14 -2.1423 -5.0773 6.4884 21 1 -2.1568 -3.6010 6.6487 22 1 -3.1661 -5.6819 7.3781 23 1 -0.8007 -5.6014 6.8497 24 6 -0.8007 -6.5326 0.1654 25 6 -1.2944 -5.6462 -0.7735 26 6 -1.5612 -6.0786 -2.0590 27 6 -1.3424 -7.3994 -2.4034 28 6 -0.8533 -8.2869 -1.4632 29 6 -0.5829 -7.8536 -0.1787 30 6 1.4647 -2.4445 0.1187 31 1 -0.3633 0.0835 1.0242 32 1 -0.3634 0.8452 -0.5845 33 1 -0.3632 -0.9289 -0.4398 34 1 4.0283 -0.1663 -0.0811 35 1 3.9283 -1.6485 -1.0661 36 1 4.0183 -1.4857 1.9819 37 1 5.3022 -2.1007 0.9124 38 1 4.0066 -3.9728 1.8747 39 1 3.7638 -3.8862 0.1136 40 1 -0.4425 -3.9385 1.6113 41 1 -2.4580 -5.2274 1.9344 42 1 -2.3098 -6.9567 2.3292 43 1 -4.4897 -5.6217 4.9804 44 1 -1.4691 -4.6152 -0.5032 45 1 -1.9437 -5.3852 -2.7934 46 1 -1.5541 -7.7379 -3.4069 47 1 -0.6828 -9.3189 -1.7322 48 1 -0.2010 -8.5471 0.5559 49 1 1.5696 -3.0095 -0.8076 50 1 0.4097 -2.2554 0.3163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153229519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:52 Heat of formation + Delta-G solvation = -81.291425 kcal Electronic energy + Delta-G solvation = -30987.020164 eV Core-core repulsion = 26977.385712 eV Total energy + Delta-G solvation = -4009.634451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64499 -40.75152 -39.77269 -38.09504 -36.75515 -34.72810 -34.09085 -33.27576 -31.91363 -31.60614 -30.51816 -30.22498 -26.85259 -26.18007 -25.10855 -23.75634 -23.33112 -22.55777 -21.35166 -20.99168 -20.02982 -18.72433 -18.36737 -17.70543 -17.63191 -17.08748 -16.92531 -16.49462 -16.36304 -16.15634 -15.83702 -15.41734 -15.07577 -14.84289 -14.76534 -14.42373 -14.27680 -14.21564 -14.13238 -14.08477 -13.75887 -13.63676 -13.41051 -13.02318 -12.92324 -12.90247 -12.62157 -12.53708 -12.45056 -12.13194 -12.01829 -11.92821 -11.83126 -11.72578 -11.55313 -11.30545 -10.89243 -10.77395 -10.53946 -9.94941 -9.74704 -9.70379 -9.47175 -8.18516 -6.27858 0.55754 0.60956 1.39453 1.42744 1.51420 1.52352 1.71399 1.97640 2.36810 2.40828 3.02084 3.16292 3.52932 3.57406 3.78499 3.88838 3.99603 4.05969 4.08050 4.18669 4.25498 4.29150 4.34300 4.37067 4.44306 4.50842 4.51980 4.63003 4.70317 4.74969 4.80469 4.83384 4.84111 4.89384 4.97676 5.09326 5.15970 5.17203 5.25029 5.30903 5.35459 5.45987 5.47582 5.65165 5.65687 5.69416 5.80931 5.95117 6.19417 6.24401 6.33242 6.72854 6.85260 7.10340 7.37405 7.41542 8.91868 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007126 B = 0.004275 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3928.190411 B = 6548.050855 C = 8613.007337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.510 3.490 3 O -0.595 6.595 4 N -0.608 5.608 5 C 0.105 3.895 6 C -0.123 4.123 7 C -0.095 4.095 8 C -0.115 4.115 9 H 0.107 0.893 10 C 0.519 3.481 11 O -0.581 6.581 12 N -0.693 5.693 13 C 0.201 3.799 14 H 0.055 0.945 15 C 0.037 3.963 16 C -0.526 4.526 17 H 0.053 0.947 18 C 0.015 3.985 19 N -0.924 5.924 20 Si 0.950 3.050 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.095 4.095 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.131 4.131 28 C -0.126 4.126 29 C -0.135 4.135 30 C 0.121 3.879 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.409 0.591 41 H 0.017 0.983 42 H 0.001 0.999 43 H 0.263 0.737 44 H 0.130 0.870 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.138 0.862 48 H 0.108 0.892 49 H 0.084 0.916 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.158 6.084 -13.554 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.302 3.698 3 O -0.476 6.476 4 N -0.341 5.341 5 C -0.017 4.017 6 C -0.161 4.161 7 C -0.133 4.133 8 C -0.137 4.137 9 H 0.125 0.875 10 C 0.305 3.695 11 O -0.461 6.461 12 N -0.343 5.343 13 C 0.095 3.905 14 H 0.073 0.927 15 C 0.000 4.000 16 C -0.565 4.565 17 H 0.071 0.929 18 C -0.184 4.184 19 N -0.564 5.564 20 Si 0.776 3.224 21 H -0.194 1.194 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.097 4.097 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.149 4.149 28 C -0.144 4.144 29 C -0.153 4.153 30 C -0.002 4.002 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.245 0.755 41 H 0.036 0.964 42 H 0.019 0.981 43 H 0.072 0.928 44 H 0.147 0.853 45 H 0.166 0.834 46 H 0.165 0.835 47 H 0.156 0.844 48 H 0.126 0.874 49 H 0.102 0.898 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.767 5.930 -13.565 17.205 hybrid contribution -0.300 0.019 1.606 1.634 sum 8.467 5.950 -11.959 15.815 Atomic orbital electron populations 1.22065 0.88927 1.06350 1.06291 1.21469 0.92068 0.82318 0.73983 1.90678 1.71911 1.32500 1.52501 1.48207 1.07816 1.05982 1.72100 1.21711 0.79153 1.01694 0.99145 1.21867 1.01296 0.94410 0.98560 1.21280 0.91885 0.97200 1.02926 1.21677 0.97660 0.92251 1.02078 0.87460 1.20817 0.81956 0.91434 0.75248 1.90659 1.62766 1.40987 1.51663 1.45895 1.07563 1.09110 1.71696 1.19689 0.95311 0.84254 0.91206 0.92710 1.19138 0.90911 0.96336 0.93613 1.21387 0.92869 1.47217 0.94978 0.92873 1.25695 0.94894 0.95341 1.02494 1.70052 0.99721 1.50477 1.36145 0.85680 0.77671 0.78751 0.80310 1.19433 1.21258 1.19906 1.20413 0.98706 0.94670 0.95876 1.21095 0.99081 0.99882 0.93471 1.21450 0.99692 0.96731 0.96187 1.21454 0.99524 0.93640 1.00276 1.21350 0.99462 1.00791 0.92781 1.21155 1.01123 0.95562 0.97505 1.21772 0.97490 0.83291 0.97624 0.87470 0.88241 0.87661 0.89948 0.90035 0.91917 0.88509 0.92045 0.91351 0.75462 0.96427 0.98098 0.92795 0.85256 0.83423 0.83489 0.84370 0.87362 0.89808 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 9.47 71.24 0.67 -1.84 16 2 C 0.51 11.14 7.80 87.66 0.68 11.83 16 3 O -0.59 -18.04 16.52 -3.04 -0.05 -18.09 16 4 N -0.61 -11.55 2.97 -818.90 -2.43 -13.99 16 5 C 0.11 1.91 6.44 86.36 0.56 2.46 16 6 C -0.12 -2.12 6.08 30.67 0.19 -1.93 16 7 C -0.09 -2.03 4.46 30.62 0.14 -1.89 16 8 C -0.11 -2.54 2.67 -11.46 -0.03 -2.57 16 9 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 10 C 0.52 15.94 7.11 87.66 0.62 16.57 16 11 O -0.58 -22.57 15.64 -3.05 -0.05 -22.61 16 12 N -0.69 -21.94 3.95 -446.09 -1.76 -23.70 16 13 C 0.20 7.80 2.11 44.25 0.09 7.89 16 14 H 0.05 2.45 7.44 -2.39 -0.02 2.44 16 15 C 0.04 1.75 4.49 29.85 0.13 1.89 16 16 C -0.53 -27.08 8.84 25.60 0.23 -26.85 16 17 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 18 C 0.01 0.78 5.46 84.66 0.46 1.24 16 19 N -0.92 -51.97 13.29 21.45 0.28 -51.68 16 20 Si 0.95 41.99 29.54 68.60 2.03 44.02 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C -0.10 -3.30 4.91 -19.87 -0.10 -3.40 16 25 C -0.12 -3.35 9.32 22.27 0.21 -3.14 16 26 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 27 C -0.13 -3.05 10.05 22.27 0.22 -2.82 16 28 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 29 C -0.13 -4.51 9.67 22.27 0.22 -4.29 16 30 C 0.12 2.07 5.29 86.36 0.46 2.53 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 1.03 6.19 -2.39 -0.01 1.01 16 34 H 0.08 1.71 7.00 -2.39 -0.02 1.70 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.50 8.07 -2.39 -0.02 1.48 16 39 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 40 H 0.41 11.22 8.15 -92.70 -0.76 10.47 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 44 H 0.13 3.20 7.73 -2.91 -0.02 3.18 16 45 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 46 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 48 H 0.11 3.69 8.04 -2.91 -0.02 3.67 16 49 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.11 1.51 5.23 -2.39 -0.01 1.50 16 Total: -1.00 -71.85 406.97 3.40 -68.45 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.18 Total: 27.77 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 5.20 Total: -10.17 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -3.91 Total: -89.36 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -0.10 Total: -40.70 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -71.85 3.40 -68.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153229519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.842 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds