Wall clock time and date at job start Wed Apr 1 2020 03:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21285 * 119.99532 * 2 1 4 4 N 1.34776 * 120.00347 * 179.97438 * 2 1 3 5 5 C 1.46921 * 120.62950 * 354.42067 * 4 2 1 6 6 C 1.53195 * 108.77224 * 233.58258 * 5 4 2 7 7 C 1.53042 * 109.31231 * 305.36293 * 6 5 4 8 8 C 1.53036 * 109.53726 * 61.36563 * 7 6 5 9 9 H 1.09000 * 109.52489 * 58.60222 * 8 7 6 10 10 C 1.50699 * 109.49787 * 178.68141 * 8 7 6 11 11 O 1.21287 * 119.99551 * 359.84029 * 10 8 7 12 12 N 1.34773 * 120.00185 * 179.83880 * 10 8 7 13 13 C 1.46505 * 119.99765 * 180.02562 * 12 10 8 14 14 H 1.08993 * 109.47407 * 34.99696 * 13 12 10 15 15 C 1.53008 * 109.46800 * 155.00033 * 13 12 10 16 16 C 1.50700 * 109.46786 * 294.99583 * 15 13 12 17 17 H 1.08000 * 120.00636 * 0.02562 * 16 15 13 18 18 C 1.37881 * 119.99701 * 180.02562 * 16 15 13 19 19 N 1.31512 * 120.00043 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99900 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47285 * 269.99922 * 20 18 16 22 22 H 1.48507 * 109.47243 * 150.00133 * 20 18 16 23 23 H 1.48499 * 109.47321 * 30.00073 * 20 18 16 24 24 C 1.50693 * 109.46998 * 274.99477 * 13 12 10 25 25 C 1.38237 * 120.00171 * 319.73157 * 24 13 12 26 26 C 1.38239 * 120.00111 * 179.78622 * 25 24 13 27 27 C 1.38236 * 119.99945 * 0.46057 * 26 25 24 28 28 C 1.38242 * 119.99927 * 359.77019 * 27 26 25 29 29 C 1.38234 * 119.99887 * 0.02562 * 28 27 26 30 30 C 1.46925 * 120.62997 * 174.38825 * 4 2 1 31 31 H 1.09002 * 109.47212 * 184.88046 * 1 2 3 32 32 H 1.09006 * 109.47411 * 304.87545 * 1 2 3 33 33 H 1.08997 * 109.47911 * 64.87832 * 1 2 3 34 34 H 1.09003 * 109.58829 * 353.36750 * 5 4 2 35 35 H 1.08995 * 109.59116 * 113.65363 * 5 4 2 36 36 H 1.08999 * 109.49953 * 65.31734 * 6 5 4 37 37 H 1.09005 * 109.49680 * 185.40738 * 6 5 4 38 38 H 1.08999 * 109.45760 * 301.34362 * 7 6 5 39 39 H 1.09002 * 109.45346 * 181.38821 * 7 6 5 40 40 H 0.96995 * 119.99981 * 359.97438 * 12 10 8 41 41 H 1.08993 * 109.46837 * 174.99910 * 15 13 12 42 42 H 1.08993 * 109.47114 * 54.99571 * 15 13 12 43 43 H 0.97000 * 120.00032 * 359.97438 * 19 18 16 44 44 H 1.07997 * 120.00001 * 359.97438 * 25 24 13 45 45 H 1.08000 * 120.00124 * 180.25533 * 26 25 24 46 46 H 1.07989 * 120.00349 * 179.78808 * 27 26 25 47 47 H 1.07991 * 120.00290 * 179.97438 * 28 27 26 48 48 H 1.08003 * 120.00334 * 179.97438 * 29 28 27 49 49 H 1.08995 * 109.58911 * 6.63229 * 30 4 2 50 50 H 1.09003 * 109.70578 * 246.27056 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4655 -2.4445 0.1240 6 6 2.0724 -3.2392 1.2846 7 6 3.5805 -3.3818 1.0665 8 6 4.2272 -1.9951 1.0403 9 1 4.0235 -1.4803 1.9792 10 6 5.7163 -2.1379 0.8578 11 8 6.2124 -3.2405 0.7614 12 7 6.4967 -1.0406 0.8018 13 6 7.9443 -1.1795 0.6239 14 1 8.1506 -2.0316 -0.0237 15 6 8.5041 0.0935 -0.0142 16 6 7.9444 0.2463 -1.4050 17 1 7.2576 -0.4905 -1.7948 18 6 8.3089 1.3269 -2.1799 19 7 9.1456 2.2239 -1.7055 20 14 7.6157 1.5160 -3.9041 21 1 8.5094 0.8344 -4.8745 22 1 7.5232 2.9584 -4.2451 23 1 6.2632 0.9057 -3.9636 24 6 8.5965 -1.3981 1.9646 25 6 8.1618 -0.6886 3.0686 26 6 8.7572 -0.8923 4.2995 27 6 9.7935 -1.7985 4.4245 28 6 10.2314 -2.5046 3.3195 29 6 9.6332 -2.3039 2.0896 30 6 3.6448 -1.1863 -0.1231 31 1 -0.3634 -1.0239 0.0874 32 1 -0.3634 0.5876 0.8431 33 1 -0.3635 0.4363 -0.9304 34 1 0.4108 -2.2549 0.3231 35 1 1.5666 -3.0109 -0.8017 36 1 1.8885 -2.7131 2.2213 37 1 1.6157 -4.2281 1.3266 38 1 3.7640 -3.8862 0.1178 39 1 4.0109 -3.9681 1.8784 40 1 6.0999 -0.1589 0.8785 41 1 9.5908 0.0266 -0.0652 42 1 8.2211 0.9566 0.5883 43 1 9.5058 2.1255 -0.8103 44 1 7.3551 0.0226 2.9700 45 1 8.4148 -0.3410 5.1628 46 1 10.2609 -1.9552 5.3853 47 1 11.0413 -3.2122 3.4170 48 1 9.9755 -2.8552 1.2262 49 1 4.0279 -0.1665 -0.0871 50 1 3.9278 -1.6499 -1.0682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153229578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:57 Heat of formation + Delta-G solvation = -61.285890 kcal Electronic energy + Delta-G solvation = -30920.866470 eV Core-core repulsion = 26912.099524 eV Total energy + Delta-G solvation = -4008.766946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.55966 -39.57700 -38.60346 -37.08590 -35.33801 -33.22369 -32.96744 -31.97720 -30.87297 -30.50620 -29.60885 -28.47545 -25.43613 -24.71061 -23.88951 -22.39602 -22.11191 -21.70569 -20.15174 -19.66759 -19.11153 -17.51167 -17.06765 -16.52730 -16.42229 -16.17465 -15.64355 -15.42499 -15.06656 -14.78098 -14.43976 -14.10318 -13.79999 -13.70204 -13.59980 -13.43065 -13.30192 -13.15724 -13.07202 -12.87240 -12.53221 -12.31179 -12.23639 -12.10564 -11.69853 -11.60337 -11.26159 -11.10087 -11.03435 -10.81411 -10.73903 -10.71219 -10.63428 -10.18680 -10.05478 -9.91772 -9.41608 -8.86178 -8.77220 -8.60226 -8.44385 -8.37385 -8.22956 -6.39540 -4.10678 1.69751 1.72441 2.52142 2.75252 3.09060 3.43287 3.46980 3.62160 3.64353 4.15860 4.36389 4.46524 4.52101 4.68315 4.70034 4.87556 4.89997 5.07202 5.16474 5.19350 5.19978 5.20800 5.28099 5.32835 5.37956 5.40855 5.47466 5.55102 5.65304 5.67722 5.73558 5.83061 5.85503 5.87305 6.05912 6.07377 6.20744 6.26959 6.30964 6.34965 6.46177 6.76741 6.77705 6.81614 6.99047 7.20522 7.26555 7.32440 7.41410 8.03951 8.07089 8.09274 8.41682 8.67364 8.82653 9.60855 11.00578 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007090 B = 0.004546 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3948.172498 B = 6157.370060 C = 8944.961130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.509 3.491 3 O -0.539 6.539 4 N -0.612 5.612 5 C 0.100 3.900 6 C -0.135 4.135 7 C -0.099 4.099 8 C -0.120 4.120 9 H 0.096 0.904 10 C 0.518 3.482 11 O -0.547 6.547 12 N -0.698 5.698 13 C 0.192 3.808 14 H 0.088 0.912 15 C 0.010 3.990 16 C -0.599 4.599 17 H 0.052 0.948 18 C 0.020 3.980 19 N -0.910 5.910 20 Si 1.068 2.932 21 H -0.288 1.288 22 H -0.284 1.284 23 H -0.289 1.289 24 C -0.074 4.074 25 C -0.109 4.109 26 C -0.124 4.124 27 C -0.134 4.134 28 C -0.122 4.122 29 C -0.108 4.108 30 C 0.119 3.881 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.402 0.598 41 H 0.024 0.976 42 H 0.015 0.985 43 H 0.269 0.731 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.120 0.880 49 H 0.103 0.897 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.975 -10.408 9.236 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.298 3.702 3 O -0.416 6.416 4 N -0.347 5.347 5 C -0.023 4.023 6 C -0.173 4.173 7 C -0.137 4.137 8 C -0.142 4.142 9 H 0.114 0.886 10 C 0.303 3.697 11 O -0.424 6.424 12 N -0.346 5.346 13 C 0.087 3.913 14 H 0.106 0.894 15 C -0.027 4.027 16 C -0.637 4.637 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.545 5.545 20 Si 0.896 3.104 21 H -0.215 1.215 22 H -0.210 1.210 23 H -0.215 1.215 24 C -0.075 4.075 25 C -0.127 4.127 26 C -0.142 4.142 27 C -0.152 4.152 28 C -0.140 4.140 29 C -0.127 4.127 30 C -0.004 4.004 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.236 0.764 41 H 0.042 0.958 42 H 0.033 0.967 43 H 0.080 0.920 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.135 0.865 48 H 0.138 0.862 49 H 0.121 0.879 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.275 -9.628 7.801 18.903 hybrid contribution -0.111 -0.614 1.450 1.579 sum -14.386 -10.241 9.252 19.936 Atomic orbital electron populations 1.22033 0.91965 1.04407 1.05336 1.20823 0.90596 0.83114 0.75645 1.90773 1.70486 1.30905 1.49389 1.48158 1.07194 1.06269 1.73080 1.21941 0.96677 0.84420 0.99245 1.21955 0.96315 1.00522 0.98480 1.21315 0.93608 0.94960 1.03783 1.21681 0.92699 0.98924 1.00888 0.88607 1.20258 0.88157 0.84809 0.76507 1.90659 1.75590 1.25797 1.50401 1.46004 1.07912 1.08722 1.71984 1.20056 0.78227 1.02133 0.90845 0.89431 1.19509 0.96525 0.90305 0.96368 1.21936 1.30776 1.11554 0.99413 0.93008 1.25772 0.95348 0.92636 1.04728 1.70762 1.28919 1.35647 1.19219 0.83550 0.75697 0.76288 0.74823 1.21490 1.20988 1.21463 1.20564 0.95807 0.94845 0.96269 1.20922 1.00068 0.99337 0.92403 1.21054 0.97072 0.98849 0.97275 1.21011 0.97996 0.97859 0.98338 1.21054 1.00021 0.99970 0.92988 1.21023 0.96295 0.97878 0.97475 1.21549 0.79059 1.02497 0.97258 0.89959 0.88867 0.88671 0.89028 0.91012 0.91403 0.90229 0.90852 0.90780 0.76370 0.95774 0.96687 0.92045 0.86623 0.86660 0.86732 0.86513 0.86194 0.87878 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 10.11 36.00 0.36 -0.97 16 2 C 0.51 6.42 7.79 -10.99 -0.09 6.33 16 3 O -0.54 -9.52 16.52 5.55 0.09 -9.42 16 4 N -0.61 -6.99 2.97 -172.77 -0.51 -7.50 16 5 C 0.10 0.76 6.31 -3.71 -0.02 0.73 16 6 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 7 C -0.10 -1.11 4.46 -26.69 -0.12 -1.23 16 8 C -0.12 -1.59 2.68 -91.65 -0.25 -1.84 16 9 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 10 C 0.52 8.99 7.11 -10.99 -0.08 8.91 16 11 O -0.55 -11.11 15.64 5.55 0.09 -11.02 16 12 N -0.70 -12.79 3.95 -54.93 -0.22 -13.01 16 13 C 0.19 3.96 2.11 -69.08 -0.15 3.81 16 14 H 0.09 1.98 7.44 -51.93 -0.39 1.60 16 15 C 0.01 0.25 3.80 -27.88 -0.11 0.14 16 16 C -0.60 -16.19 8.84 -34.44 -0.30 -16.50 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 18 C 0.02 0.55 5.46 -17.82 -0.10 0.46 16 19 N -0.91 -27.29 13.65 55.43 0.76 -26.54 16 20 Si 1.07 25.43 29.90 -169.99 -5.08 20.35 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.07 -1.38 4.91 -104.63 -0.51 -1.89 16 25 C -0.11 -1.86 9.32 -39.58 -0.37 -2.23 16 26 C -0.12 -1.86 10.05 -39.58 -0.40 -2.25 16 27 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 28 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 29 C -0.11 -1.89 9.67 -39.58 -0.38 -2.28 16 30 C 0.12 1.66 5.58 -3.71 -0.02 1.64 16 31 H 0.08 0.39 5.14 -51.93 -0.27 0.12 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.45 5.14 -51.93 -0.27 0.18 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 39 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.40 7.11 8.14 -40.82 -0.33 6.78 16 41 H 0.02 0.63 8.01 -51.93 -0.42 0.21 16 42 H 0.01 0.38 8.01 -51.93 -0.42 -0.04 16 43 H 0.27 8.03 7.22 -40.82 -0.29 7.74 16 44 H 0.12 1.88 7.73 -52.49 -0.41 1.47 16 45 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 47 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 48 H 0.12 2.02 8.04 -52.48 -0.42 1.60 16 49 H 0.10 1.68 6.59 -51.93 -0.34 1.34 16 50 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 404.89 15.07 6.10 6.10 Total: -1.00 -34.71 404.89 -10.08 -44.79 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.82 Total: 9.17 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.48 Total: -12.92 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.03 Total: -47.05 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: 0.18 Total: -20.45 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.71 -10.08 -44.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153229578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.498 kcal (2) G-P(sol) polarization free energy of solvation -34.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds